Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0001432

Physical Location & Seq

Genomic Coordinates Reverse (-)

1886886 .. 1887766

Gene Structure 881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G001220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGATTTCCGGTCGTTGTGCTGCTTGCAGGTATTTGAGAAGGAGATGCCCCTCAGATTGCATATTCGCTCCATATTTTCCACCAAATAATCCTCAAAGATTTGCTGCTGTTCATAGAATCTTTGGTGCCAGCAATGTTGGAAGAATGCTCCAGCAACTCCCACCTGATCTTCGAGCTCAAGCTGCAGACACTTTGTATTATGAGGCAGAATGCAGAGTAGAAGATCCTGTGTACGGCTGTGTTGGGGTTATTTCCCGATTACATGAACAAATAGATGAAGCAGAATGTGAATTAGCTAAGACACGAGCTGACATTGTCATTAACTCTGATATTGGACAACAAGCTCAAGTTCAGCAGATTCATGATGAAGTTGAAGACAACTCAAGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0016020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LOB

Protein Analysis

130

Amino Acids

14.61

Weight (kDa)

5.11

Isoelectric Point (pI)

52.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	5 - 102	6.2e-40	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0001432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G26620 AT3G26660
fragaria_vesca	FvH4_7g01090 FvH4_7g28980 FvH4_7g28990
malus_domestica	MD01G1196500.v1.1 MD01G1196600.v1.1 MD07G1263400.v1.1 MD07G1263500.v1.1
prunus_persica	Prupe.2G014200_v2.0.a1 Prupe.2G289800_v2.0.a1 Prupe.2G289900_v2.0.a1 Prupe.2G290000_v2.0.a1 Prupe.6G254800_v2.0.a1 Prupe.6G254900_v2.0.a1 Prupe.6G254900_v2.0.a1
pyrus_communis	pycom01g20700 pycom07g24230
rosa_chinensis	RchiOBHm_Chr1g0316071 RchiOBHm_Chr1g0376681 RchiOBHm_Chr1g0376691
rosa_laevigata	RLG00000026579 RLG00000026580 RLG00000026581 RLG00000030703
rosa_multiflora	Rmu_sc0002531.1_g000035 Rmu_sc0009691.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281880 Rroxscaffold_4G00281890
rosa_rugosa	Rorug01G0008800 Rorug01G0397400.1 Rorug01G0397500
rosa_samantha	Rh1AG414400 Rh1AG414500 Rh1AG414600 Rh1BG373700 Rh1BG373800 Rh1BG373900 Rh1BG374000 Rh1CG016500 Rh1CG387600 Rh1CG387700 Rh1CG387800 Rh1CG387900 Rh1DG012800 Rh1DG404600 Rh1DG404700 Rh1DG404800
rosa_wichuraiana	Rw1G001220 Rw1G036340 Rw1G036350 Rw1G036360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccB1I	GGYRCC	1 cut(s)	125
AclWI	GGATC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	374
AluBI	AGCT	5 cut(s)	176, 182, 296, 308, 344
AluI	AGCT	5 cut(s)	176, 182, 296, 308, 344
Alw21I	GWGCWC	1 cut(s)	178
AlwI	GGATC	1 cut(s)	218
ApeKI	GCWGC	3 cut(s)	20, 104, 182
BanI	GGYRCC	1 cut(s)	125
BanII	GRGCYC	1 cut(s)	178
BauI	CACGAG	1 cut(s)	303
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	178
BbvI	GCAGC	3 cut(s)	7, 91, 169
BceAI	ACGGC	1 cut(s)	250
BfmI	CTRYAG	1 cut(s)	183
BfuAI	ACCTGC	1 cut(s)	18
BisI	GCNGC	3 cut(s)	21, 105, 183
BlsI	GCNGC	3 cut(s)	22, 106, 184
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	35
BpiI	GAAGAC	1 cut(s)	381
BpmI	CTGGAG	1 cut(s)	134
BpuEI	CTTGAG	3 cut(s)	162, 330, 367
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse3DI	GCAATG	1 cut(s)	139
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	7, 91, 169
Bsh1285I	CGRYCG	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	178
BsiSI	CCGG	1 cut(s)	9
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmI	GAATGC	2 cut(s)	150, 215
Bsp1286I	GDGCHC	1 cut(s)	178
Bsp143I	GATC	2 cut(s)	166, 223
BspCNI	CTCAG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	361
BspLI	GGNNCC	1 cut(s)	127
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	218
BspT107I	GGYRCC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	139
BssMI	GATC	2 cut(s)	166, 223
BssSI	CACGAG	1 cut(s)	303
Bst2BI	CACGAG	1 cut(s)	303
BstC8I	GCNNGC	2 cut(s)	25, 130
BstDEI	CTNAG	2 cut(s)	52, 297
BstKTI	GATC	2 cut(s)	169, 226
BstMBI	GATC	2 cut(s)	166, 223
BstMCI	CGRYCG	1 cut(s)	13
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	1 cut(s)	183
BstV1I	GCAGC	3 cut(s)	7, 91, 169
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	2 cut(s)	25, 130
CciI	TCATGA	1 cut(s)	361
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	2 cut(s)	263, 362
CviJI	RGCY	6 cut(s)	176, 182, 237, 296, 308, 344
CviKI_1	RGCY	6 cut(s)	176, 182, 237, 296, 308, 344
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	52, 297
DpnI	GATC	2 cut(s)	168, 225
DpnII	GATC	2 cut(s)	166, 223
Ecl136II	GAGCTC	1 cut(s)	176
Eco24I	GRGCYC	1 cut(s)	178
Eco53kI	GAGCTC	1 cut(s)	176
EcoICRI	GAGCTC	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	178
FaeI	CATG	2 cut(s)	266, 365
FaiI	YATR	6 cut(s)	62, 73, 114, 201, 264, 363
FatI	CATG	2 cut(s)	262, 361
Fnu4HI	GCNGC	3 cut(s)	21, 105, 183
FriOI	GRGCYC	1 cut(s)	178
Fsp4HI	GCNGC	3 cut(s)	21, 105, 183
GluI	GCNGC	3 cut(s)	21, 105, 183
GsuI	CTGGAG	1 cut(s)	134
HapII	CCGG	1 cut(s)	9
Hin1II	CATG	2 cut(s)	266, 365
HinfI	GANTC	2 cut(s)	117, 358
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	2 cut(s)	55, 328
Hpy188III	TCNNGA	2 cut(s)	255, 362
Hpy8I	GTNNAC	1 cut(s)	232
HpyAV	CCTTC	1 cut(s)	33
HpyCH4V	TGCA	4 cut(s)	27, 60, 185, 213
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	52, 297
Hsp92II	CATG	2 cut(s)	266, 365
Kzo9I	GATC	2 cut(s)	166, 223
LmnI	GCTCC	2 cut(s)	73, 153
LpnPI	CCDG	6 cut(s)	13, 22, 142, 164, 177, 240
Lsp1109I	GCAGC	3 cut(s)	7, 91, 169
LweI	GCATC	1 cut(s)	35
MalI	GATC	2 cut(s)	168, 225
MboI	GATC	2 cut(s)	166, 223
MboII	GAAGA	4 cut(s)	153, 161, 233, 386
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	1 cut(s)	178
MluCI	AATT	1 cut(s)	290
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	3 cut(s)	61, 102, 196
MseI	TTAA	2 cut(s)	321, 391
MspI	CCGG	1 cut(s)	9
Mva1269I	GAATGC	2 cut(s)	150, 215
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	2 cut(s)	166, 223
NlaIII	CATG	2 cut(s)	266, 365
NlaIV	GGNNCC	1 cut(s)	127
PagI	TCATGA	1 cut(s)	361
PctI	GAATGC	2 cut(s)	150, 215
PfeI	GAWTC	2 cut(s)	117, 358
PflFI	GACNNNGTC	1 cut(s)	314
PkrI	GCNGC	3 cut(s)	22, 106, 184
Psp124BI	GAGCTC	1 cut(s)	178
PspN4I	GGNNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	223
PsyI	GACNNNGTC	1 cut(s)	314
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	178
SaqAI	TTAA	2 cut(s)	321, 391
SatI	GCNGC	3 cut(s)	21, 105, 183
Sau3AI	GATC	2 cut(s)	166, 223
SduI	GDGCHC	1 cut(s)	178
SetI	ASST	7 cut(s)	32, 166, 178, 184, 298, 310, 346
SfaNI	GCATC	1 cut(s)	35
SfcI	CTRYAG	1 cut(s)	183
SmlI	CTYRAG	3 cut(s)	177, 345, 382
SmoI	CTYRAG	3 cut(s)	177, 345, 382
Sse9I	AATT	1 cut(s)	290
SstI	GAGCTC	1 cut(s)	178
TaqI	TCGA	1 cut(s)	172
TasI	AATT	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	117, 358
Tru1I	TTAA	2 cut(s)	321, 391
Tru9I	TTAA	2 cut(s)	321, 391
TseI	GCWGC	3 cut(s)	20, 104, 182
TspDTI	ATGAA	5 cut(s)	101, 279, 291, 350, 381
Tth111I	GACNNNGTC	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.