Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

11051207 .. 11052756

Gene Structure 1550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G29075.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGCCGTATTACACCAACGACGACAATGACGTCGACGATTTCACCGAATACGATCCGATGCCTTATAGTGGAGGCTACGACATCACCGTGACATACGGCCGTTCAATTCCACCGTCCGACGAGACTTGTTACCCTCTCTCCTCTCTCTCCGGCGACGCCTTTGAGTATCAGCGACCTAATTTCTCTTCTAACCACGATTCTTCTGCTTATGACGACCAAGCTCTTAAAACCGAGTACAGTAGCTATGCACGACCCGGACCCGTTGGATCTGGATCTGATTTTGGCCGGAAACCTAATTCTGGATATGGAGGGAGAACGGAGGTTGAGTATGGCCGGAAAACTGAATCGGAGCATGGATCTGGCTATGGTGGAAGAATTGAGAGCGATTACGTGAAGCCTAGCTATGGCGGTCACGAGGATGATGGTGACGATGGTCACAAAAAACATAGTGGTAAGGATTATGATGATGGAGATGAGAAGAGTAAGAAGAAGGAGAAGGAGAAGAAGAAGGATAAGAAGAAAGATGGTAATAACTCTGAAGATGATGAGTTTAAGAAGAAGAAGAAGAAAGAGCAGTACAAGGAGCATCATGATGATGATGATTATGATGAGAAGAAGAAGAAGAAGAAAGACTATAATGATGATGATGAGAAGAAGAAGAAGAAGCATTATAATGATGATGATGATGAGAAGAAGAAGAAGCATAATTACAATGATGATGATGATGAGAAGAAGAAGAAGAAGGAGTATCATGATGATGAGGATAAGAAGAAGAAGAAGCACTATGATAATGATGATGATGAGAAGAAGAAGAAGAAGGATCATCGTGATGATGATGATGAGAAGAAGAAGAAGAAGGATAAGCACCACAAGGGACATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008289 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

294

Amino Acids

34.45

Weight (kDa)

5.73

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	672
AasI	GACNNNNNNGTC	1 cut(s)	29
AatII	GACGTC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	33
AciI	CCGC	1 cut(s)	408
AclWI	GGATC	5 cut(s)	47, 274, 280, 364, 828
AcoI	YGGCCR	3 cut(s)	97, 283, 331
AcuI	CTGAAG	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	30, 156
AfaI	GTAC	2 cut(s)	236, 578
AfiI	CCNNNNNNNGG	3 cut(s)	68, 299, 404
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	3 cut(s)	221, 243, 402
AluI	AGCT	3 cut(s)	221, 243, 402
Alw26I	GTCTC	1 cut(s)	116
AlwI	GGATC	5 cut(s)	47, 274, 280, 364, 828
AoxI	GGCC	3 cut(s)	97, 283, 331
AspS9I	GGNCC	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	255
AsuHPI	GGTGA	3 cut(s)	34, 76, 437
AvaII	GGWCC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	692, 724
BauI	CACGAG	1 cut(s)	413
BccI	CCATC	4 cut(s)	416, 425, 461, 518
BceAI	ACGGC	2 cut(s)	84, 112
BcgI	CGANNNNNNTGC	2 cut(s)	185, 219
BcnI	CCSGG	1 cut(s)	255
BcoDI	GTCTC	1 cut(s)	116
BfaI	CTAG	1 cut(s)	399
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	259
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	2 cut(s)	48, 595
BoxI	GACNNNNGTC	1 cut(s)	432
BpuMI	CCSGG	1 cut(s)	255
BsaAI	YACGTR	1 cut(s)	391
BsaBI	GATNNNNATC	1 cut(s)	271
BsaHI	GRCGYC	2 cut(s)	30, 156
BsaXI	ACNNNNNCTCC	4 cut(s)	122, 152, 311, 341
Bsc4I	CCNNNNNNNGG	3 cut(s)	68, 299, 404
Bse8I	GATNNNNATC	1 cut(s)	271
BseGI	GGATG	1 cut(s)	424
BseJI	GATNNNNATC	1 cut(s)	271
BseLI	CCNNNNNNNGG	3 cut(s)	68, 299, 404
BseRI	GAGGAG	1 cut(s)	130
BseX3I	CGGCCG	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	100
BshFI	GGCC	3 cut(s)	99, 285, 333
BsiEI	CGRYCG	1 cut(s)	100
BsiSI	CCGG	4 cut(s)	150, 255, 286, 334
BslI	CCNNNNNNNGG	3 cut(s)	68, 299, 404
BsmAI	GTCTC	1 cut(s)	116
BsnI	GGCC	3 cut(s)	99, 285, 333
Bsp143I	GATC	5 cut(s)	52, 266, 272, 356, 820
BspACI	CCGC	1 cut(s)	408
BspANI	GGCC	3 cut(s)	99, 285, 333
BspHI	TCATGA	2 cut(s)	589, 751
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	5 cut(s)	47, 274, 280, 364, 828
BssMI	GATC	5 cut(s)	52, 266, 272, 356, 820
BssNI	GRCGYC	2 cut(s)	30, 156
BssSI	CACGAG	1 cut(s)	413
Bst2BI	CACGAG	1 cut(s)	413
Bst4CI	ACNGT	3 cut(s)	88, 114, 239
Bst6I	CTCTTC	2 cut(s)	190, 473
BstACI	GRCGYC	2 cut(s)	30, 156
BstBAI	YACGTR	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	5 cut(s)	55, 269, 275, 359, 823
BstMAI	GTCTC	1 cut(s)	116
BstMBI	GATC	5 cut(s)	52, 266, 272, 356, 820
BstMCI	CGRYCG	1 cut(s)	100
BstPAI	GACNNNNGTC	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	253
BstX2I	RGATCY	3 cut(s)	266, 272, 356
BstYI	RGATCY	3 cut(s)	266, 272, 356
BstZI	CGGCCG	1 cut(s)	97
BsuRI	GGCC	3 cut(s)	99, 285, 333
BtsCI	GGATG	1 cut(s)	424
CciI	TCATGA	2 cut(s)	589, 751
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	2 cut(s)	235, 577
CviAII	CATG	4 cut(s)	353, 590, 752, 878
CviJI	RGCY	9 cut(s)	75, 99, 221, 243, 285, 333, 363, 397, 402
CviKI_1	RGCY	9 cut(s)	75, 99, 221, 243, 285, 333, 363, 397, 402
CviQI	GTAC	2 cut(s)	235, 577
DpnI	GATC	5 cut(s)	54, 268, 274, 358, 822
DpnII	GATC	5 cut(s)	52, 266, 272, 356, 820
DrdI	GACNNNNNNGTC	1 cut(s)	29
DseDI	GACNNNNNNGTC	1 cut(s)	29
EaeI	YGGCCR	3 cut(s)	97, 283, 331
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	2 cut(s)	190, 473
EarI	CTCTTC	2 cut(s)	190, 473
EclXI	CGGCCG	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	257
Eco52I	CGGCCG	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	558
FaeI	CATG	4 cut(s)	356, 593, 755, 881
FatI	CATG	4 cut(s)	352, 589, 751, 877
FblI	GTMKAC	1 cut(s)	33
FokI	GGATG	1 cut(s)	431
FspBI	CTAG	1 cut(s)	399
HaeIII	GGCC	3 cut(s)	99, 285, 333
HapII	CCGG	4 cut(s)	150, 255, 286, 334
HgaI	GACGC	1 cut(s)	164
Hin1I	GRCGYC	2 cut(s)	30, 156
Hin1II	CATG	4 cut(s)	356, 593, 755, 881
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	197, 344
HpaII	CCGG	4 cut(s)	150, 255, 286, 334
HphI	GGTGA	3 cut(s)	34, 76, 437
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	57, 118, 277, 349, 538
Hpy188III	TCNNGA	6 cut(s)	270, 300, 413, 590, 752, 827
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	5 cut(s)	23, 35, 38, 122, 158
HpyAV	CCTTC	6 cut(s)	484, 490, 502, 736, 811, 850
HpyCH4III	ACNGT	3 cut(s)	88, 114, 239
HpyCH4IV	ACGT	2 cut(s)	30, 390
HpyCH4V	TGCA	1 cut(s)	248
HpySE526I	ACGT	2 cut(s)	30, 390
Hsp92I	GRCGYC	2 cut(s)	30, 156
Hsp92II	CATG	4 cut(s)	356, 593, 755, 881
Kzo9I	GATC	5 cut(s)	52, 266, 272, 356, 820
LmnI	GCTCC	2 cut(s)	349, 583
LpnPI	CCDG	7 cut(s)	163, 255, 268, 285, 299, 345, 347
LweI	GCATC	2 cut(s)	48, 595
MaeI	CTAG	1 cut(s)	399
MaeII	ACGT	2 cut(s)	30, 390
MaeIII	GTNAC	5 cut(s)	88, 128, 410, 425, 434
MalI	GATC	5 cut(s)	54, 268, 274, 358, 822
MboI	GATC	5 cut(s)	52, 266, 272, 356, 820
MflI	RGATCY	3 cut(s)	266, 272, 356
MluCI	AATT	5 cut(s)	105, 178, 295, 375, 706
MmeI	TCCRAC	2 cut(s)	141, 244
MnlI	CCTC	7 cut(s)	65, 144, 151, 302, 313, 409, 754
MseI	TTAA	2 cut(s)	225, 552
MslI	CAYNNNNRTG	7 cut(s)	86, 417, 591, 594, 672, 756, 828
MspI	CCGG	4 cut(s)	150, 255, 286, 334
MspR9I	CCNGG	1 cut(s)	255
NciI	CCSGG	1 cut(s)	255
NdeII	GATC	5 cut(s)	52, 266, 272, 356, 820
NlaIII	CATG	4 cut(s)	356, 593, 755, 881
NlaIV	GGNNCC	1 cut(s)	259
NmuCI	GTSAC	4 cut(s)	88, 410, 425, 434
PagI	TCATGA	2 cut(s)	589, 751
PcsI	WCGNNNNNNNCGW	3 cut(s)	27, 42, 84
PfeI	GAWTC	2 cut(s)	197, 344
Ppu21I	YACGTR	1 cut(s)	391
PshAI	GACNNNNGTC	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	672
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	257
PsuI	RGATCY	3 cut(s)	266, 272, 356
RsaI	GTAC	2 cut(s)	236, 578
RsaNI	GTAC	2 cut(s)	235, 577
RseI	CAYNNNNRTG	7 cut(s)	86, 417, 591, 594, 672, 756, 828
SalI	GTCGAC	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	225, 552
Sau3AI	GATC	5 cut(s)	52, 266, 272, 356, 820
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	8 cut(s)	33, 178, 223, 245, 295, 324, 393, 404
SfaNI	GCATC	2 cut(s)	48, 595
SgrDI	CGTCGACG	1 cut(s)	32
SinI	GGWCC	1 cut(s)	257
SmiMI	CAYNNNNRTG	7 cut(s)	86, 417, 591, 594, 672, 756, 828
Sse9I	AATT	5 cut(s)	105, 178, 295, 375, 706
SsiI	CCGC	1 cut(s)	408
SspMI	CTAG	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	3 cut(s)	88, 114, 239
TaiI	ACGT	2 cut(s)	33, 393
TaqI	TCGA	1 cut(s)	33
TasI	AATT	5 cut(s)	105, 178, 295, 375, 706
TatI	WGTACW	2 cut(s)	234, 576
TfiI	GAWTC	2 cut(s)	197, 344
Tru1I	TTAA	2 cut(s)	225, 552
Tru9I	TTAA	2 cut(s)	225, 552
TseFI	GTSAC	4 cut(s)	88, 410, 425, 434
Tsp45I	GTSAC	4 cut(s)	88, 410, 425, 434
TspGWI	ACGGA	1 cut(s)	332
VpaK11BI	GGWCC	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	399
ZraI	GACGTC	1 cut(s)	31

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.