Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

4137109 .. 4139393

Gene Structure 2285 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1052800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCCGTACTATACCCACGCCGAGGATGAAGTCACCGACTTCGACGAGTACGATCCGACGCCGTACGGTGGCGGATACGACATATACCTGACCTACGGGCGCCCTCTCGACCCATCCGATGAGTCCTGCCACCCTAACTCATCGCCGTCCGATGATTTCGATTACGATCGCCCCCAGTTCTCATCCTACTCCGAGCCCGCCGCTTACGCTGACGAGGCTCTCGAAGATGAGTACACTCACTACGCCCGACCCACGCACCGACCTGGACCAGCTGTCGGGTTCAATCCGGGCGGGGGACATCCAGAGGGAGAGTACGAAGGCAGGCCCCAGCCGGCCTATGGGTTCCAGCCTGGCGGGGAGGTTAGGCCCGAATCAGGTTATGGTCGGAAGCCGGAGTATGGACAATCCGGTTCGGAATACGGGTCTGGGTATCAACGCAGGCCCGAATCCGATGAGCCCGGCTCCGAATATGGATCTGGGTATGGTCGGAAGCCGGAGTACGAGGCGCCCGAATCGGAGTATGGATCTGGATACGGTCGAAAGCCCGAGTATAAGGCACCGGAACCAGAGTATGGATCTGGATACGGTCGAAAGCCCGAGTACGAGGCGCCGGAATCCGAATATGGATCTGGGTACGGTCGAAAGCCCGAGTATAAGGCACCGGAACCCGAGTATGAATCTGGGTACGGGAGAAAGCCCGAGTTTGAAGCACCGCCAGCTGAATTCGGATCTGGGTATGGTCGGAAGCCGAGCTACGGTGAGGAATCTGGTTATGGCGATGAGCCGCCGAGAAAGCCAAGCTATGGTGAGGAAGGTGGATATGGAGAAGAGCCACCGAGAAGGCCAACCTATGGGCGGCCCAGTTATGAGACTCCAGAAAGCGAGGAGAGGCCGAGCTATGGGAGGACTGAGTTTGAGAAGCCAGGTTACGGCGAAGAACCGCCGAGGAGGACCGGCTATGGAGATGAGCCGCCACCCCCGAGGCCAAGCTATGGGAGGCCCGGCTACGAGGGCCAGGAAAGTGGGGAGTATGAGAAGCCCAGTTATGGAAGGAGCGAGGAGCAGGAGTACCGCCGCCCTGGTGGTTATGAGAGGCGCAGCGACGATGATTCTGATTCCGAGCGTCCTAAGTACGGTGAAGAAGGCTATGGTCGCAAGAAATATGGAAATGACGACTCAGATGACGATGAGGAGAAAAAGCAGCGCCGCCACAAGCACCACCATCGCAAGAGCTATGACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

416

Amino Acids

47.0

Weight (kDa)

4.67

Isoelectric Point (pI)

65.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	99, 505, 556, 607, 658
AccB7I	CCANNNNNTGG	4 cut(s)	572, 803, 851, 992
AclWI	GGATC	6 cut(s)	47, 481, 532, 583, 634, 736
AcsI	RAATTY	1 cut(s)	722
AcyI	GRCGYC	4 cut(s)	59, 100, 506, 608
AgsI	TTSAA	2 cut(s)	283, 707
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	5 cut(s)	262, 349, 922, 1014, 1078
AluBI	AGCT	7 cut(s)	272, 719, 753, 801, 897, 990, 1233
AluI	AGCT	7 cut(s)	272, 719, 753, 801, 897, 990, 1233
Alw26I	GTCTC	1 cut(s)	863
AlwI	GGATC	6 cut(s)	47, 481, 532, 583, 634, 736
Ama87I	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
ApeKI	GCWGC	2 cut(s)	1098, 1201
ApoI	RAATTY	1 cut(s)	722
AspLEI	GCGC	5 cut(s)	102, 508, 610, 1098, 1206
AspS9I	GGNCC	8 cut(s)	266, 324, 366, 441, 858, 951, 999, 1012
AsuC2I	CCSGG	3 cut(s)	288, 459, 1002
AsuHPI	GGTGA	4 cut(s)	25, 770, 818, 1148
AvaI	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
AvaII	GGWCC	2 cut(s)	266, 951
BanI	GGYRCC	5 cut(s)	99, 505, 556, 607, 658
BanII	GRGCYC	2 cut(s)	198, 459
BarI	GAAGNNNNNNTAC	6 cut(s)	482, 514, 737, 769, 911, 943
BbvI	GCAGC	2 cut(s)	1110, 1213
BccI	CCATC	2 cut(s)	121, 1230
BceAI	ACGGC	3 cut(s)	46, 130, 946
BcgI	CGANNNNNNTGC	2 cut(s)	1205, 1239
BciT130I	CCWGG	5 cut(s)	264, 351, 924, 1016, 1080
BciVI	GTATCC	3 cut(s)	68, 524, 575
BcnI	CCSGG	3 cut(s)	288, 459, 1002
BcoDI	GTCTC	1 cut(s)	863
BfoI	RGCGCY	4 cut(s)	103, 509, 611, 1207
BfuI	GTATCC	3 cut(s)	68, 524, 575
BisI	GCNGC	8 cut(s)	201, 785, 857, 971, 1075, 1099, 1202, 1207
BlsI	GCNGC	8 cut(s)	202, 786, 858, 972, 1076, 1100, 1203, 1208
Bme1390I	CCNGG	8 cut(s)	264, 288, 351, 459, 924, 1002, 1016, 1080
Bme18I	GGWCC	2 cut(s)	266, 951
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
BmgT120I	GGNCC	8 cut(s)	266, 324, 366, 441, 858, 951, 999, 1012
BmrFI	CCNGG	8 cut(s)	264, 288, 351, 459, 924, 1002, 1016, 1080
BmrI	ACTGGG	3 cut(s)	169, 855, 1035
BmuI	ACTGGG	3 cut(s)	169, 855, 1035
BplI	GAGNNNNNCTC	2 cut(s)	446, 478
BpmI	CTGGAG	1 cut(s)	858
BpuMI	CCSGG	3 cut(s)	288, 459, 1002
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	4 cut(s)	59, 100, 506, 608
BsaJI	CCNNGG	4 cut(s)	21, 944, 980, 1078
BsaWI	WCCGGW	3 cut(s)	407, 559, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	1052, 1082
Bse118I	RCCGGY	2 cut(s)	331, 953
Bse1I	ACTGG	3 cut(s)	175, 861, 1041
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	5 cut(s)	264, 351, 924, 1016, 1080
BseDI	CCNNGG	4 cut(s)	21, 944, 980, 1078
BseGI	GGATG	4 cut(s)	31, 113, 182, 298
BseJI	GATNNNNATC	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	900, 1191
BseNI	ACTGG	3 cut(s)	175, 861, 1041
BseRI	GAGGAG	4 cut(s)	899, 961, 1073, 1205
BseXI	GCAGC	2 cut(s)	1110, 1213
BseYI	CCCAGC	1 cut(s)	327
Bsh1285I	CGRYCG	4 cut(s)	169, 538, 589, 640
BshNI	GGYRCC	5 cut(s)	99, 505, 556, 607, 658
BsiEI	CGRYCG	4 cut(s)	169, 538, 589, 640
BsiHKCI	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
BsiWI	CGTACG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	863
BsmFI	GGGAC	1 cut(s)	309
BsoBI	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
Bsp1286I	GDGCHC	2 cut(s)	198, 459
Bsp143I	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
BspCNI	CTCAG	2 cut(s)	901, 1190
BspPI	GGATC	6 cut(s)	47, 481, 532, 583, 634, 736
BspQI	GCTCTTC	1 cut(s)	822
BspT107I	GGYRCC	5 cut(s)	99, 505, 556, 607, 658
BsrFI	RCCGGY	2 cut(s)	331, 953
BsrI	ACTGG	3 cut(s)	175, 861, 1041
BssAI	RCCGGY	2 cut(s)	331, 953
BssECI	CCNNGG	4 cut(s)	21, 944, 980, 1078
BssMI	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
BssNI	GRCGYC	4 cut(s)	59, 100, 506, 608
Bst2UI	CCWGG	5 cut(s)	264, 351, 924, 1016, 1080
Bst4CI	ACNGT	6 cut(s)	68, 536, 587, 638, 758, 1136
Bst6I	CTCTTC	1 cut(s)	822
BstACI	GRCGYC	4 cut(s)	59, 100, 506, 608
BstC8I	GCNNGC	5 cut(s)	198, 323, 333, 440, 717
BstDEI	CTNAG	3 cut(s)	909, 1128, 1177
BstF5I	GGATG	4 cut(s)	31, 113, 182, 298
BstH2I	RGCGCY	4 cut(s)	103, 509, 611, 1207
BstHHI	GCGC	5 cut(s)	102, 508, 610, 1098, 1206
BstKTI	GATC	7 cut(s)	55, 169, 476, 527, 578, 629, 731
BstMAI	GTCTC	1 cut(s)	863
BstMBI	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
BstMCI	CGRYCG	4 cut(s)	169, 538, 589, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	206, 215, 716, 793, 1011, 1152
BstNI	CCWGG	5 cut(s)	264, 351, 924, 1016, 1080
BstSCI	CCNGG	8 cut(s)	262, 286, 349, 457, 922, 1000, 1014, 1078
BstV1I	GCAGC	2 cut(s)	1110, 1213
BstX2I	RGATCY	5 cut(s)	473, 524, 575, 626, 728
BstXI	CCANNNNNNTGG	1 cut(s)	1022
BstYI	RGATCY	5 cut(s)	473, 524, 575, 626, 728
BsuI	GTATCC	3 cut(s)	68, 524, 575
BtgZI	GCGATG	3 cut(s)	126, 792, 1208
BtsCI	GGATG	4 cut(s)	31, 113, 182, 298
Cac8I	GCNNGC	5 cut(s)	198, 323, 333, 440, 717
CfoI	GCGC	5 cut(s)	102, 508, 610, 1098, 1206
Cfr10I	RCCGGY	2 cut(s)	331, 953
Cfr13I	GGNCC	8 cut(s)	266, 324, 366, 441, 858, 951, 999, 1012
CseI	GACGC	2 cut(s)	67, 1112
DdeI	CTNAG	3 cut(s)	909, 1128, 1177
DinI	GGCGCC	3 cut(s)	101, 507, 609
DpnI	GATC	7 cut(s)	54, 168, 475, 526, 577, 628, 730
DpnII	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
DriI	GACNNNNNGTC	1 cut(s)	272
Eam1104I	CTCTTC	1 cut(s)	822
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	822
EciI	GGCGGA	1 cut(s)	87
Eco24I	GRGCYC	2 cut(s)	198, 459
Eco47I	GGWCC	2 cut(s)	266, 951
Eco88I	CYCGRG	6 cut(s)	545, 596, 647, 668, 698, 979
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	722
EcoRII	CCWGG	5 cut(s)	262, 349, 922, 1014, 1078
EcoT38I	GRGCYC	2 cut(s)	198, 459
EgeI	GGCGCC	3 cut(s)	101, 507, 609
EheI	GGCGCC	3 cut(s)	101, 507, 609
FaqI	GGGAC	1 cut(s)	309
FauI	CCCGC	3 cut(s)	205, 284, 347
Fnu4HI	GCNGC	8 cut(s)	201, 785, 857, 971, 1075, 1099, 1202, 1207
FokI	GGATG	4 cut(s)	38, 100, 169, 285
FriOI	GRGCYC	2 cut(s)	198, 459
Fsp4HI	GCNGC	8 cut(s)	201, 785, 857, 971, 1075, 1099, 1202, 1207
GlaI	GCGC	5 cut(s)	101, 507, 609, 1097, 1205
GluI	GCNGC	8 cut(s)	201, 785, 857, 971, 1075, 1099, 1202, 1207
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	858
HaeII	RGCGCY	4 cut(s)	103, 509, 611, 1207
HgaI	GACGC	2 cut(s)	67, 1112
HhaI	GCGC	5 cut(s)	102, 508, 610, 1098, 1206
Hin1I	GRCGYC	4 cut(s)	59, 100, 506, 608
Hin6I	GCGC	5 cut(s)	100, 506, 608, 1096, 1204
HinP1I	GCGC	5 cut(s)	100, 506, 608, 1096, 1204
HphI	GGTGA	4 cut(s)	25, 770, 818, 1148
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	6 cut(s)	107, 221, 302, 528, 579, 875
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	3 cut(s)	47, 61, 1106
HpyAV	CCTTC	5 cut(s)	311, 806, 834, 1044, 1136
HpyCH4III	ACNGT	6 cut(s)	68, 536, 587, 638, 758, 1136
HpyF10VI	GCNNNNNNNGC	6 cut(s)	206, 215, 716, 793, 1011, 1152
HpyF3I	CTNAG	3 cut(s)	909, 1128, 1177
Hsp92I	GRCGYC	4 cut(s)	59, 100, 506, 608
HspAI	GCGC	5 cut(s)	100, 506, 608, 1096, 1204
KasI	GGCGCC	3 cut(s)	99, 505, 607
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	3 cut(s)	467, 1053, 1060
Lsp1109I	GCAGC	2 cut(s)	1110, 1213
MaeIII	GTNAC	2 cut(s)	31, 926
MalI	GATC	7 cut(s)	54, 168, 475, 526, 577, 628, 730
MboI	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
MboII	GAAGA	4 cut(s)	236, 839, 947, 1151
MflI	RGATCY	5 cut(s)	473, 524, 575, 626, 728
MhlI	GDGCHC	2 cut(s)	198, 459
MluCI	AATT	1 cut(s)	722
Mly113I	GGCGCC	3 cut(s)	100, 506, 608
MlyI	GAGTC	3 cut(s)	131, 865, 1169
MmeI	TCCRAC	4 cut(s)	80, 365, 467, 722
MroNI	GCCGGC	1 cut(s)	331
MspA1I	CMGCKG	2 cut(s)	272, 719
MspR9I	CCNGG	8 cut(s)	264, 288, 351, 459, 924, 1002, 1016, 1080
MvaI	CCWGG	5 cut(s)	264, 351, 924, 1016, 1080
MwoI	GCNNNNNNNGC	6 cut(s)	206, 215, 716, 793, 1011, 1152
NaeI	GCCGGC	1 cut(s)	333
NarI	GGCGCC	3 cut(s)	100, 506, 608
NciI	CCSGG	3 cut(s)	288, 459, 1002
NdeII	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
NgoMIV	GCCGGC	1 cut(s)	331
NmeAIII	GCCGAG	5 cut(s)	46, 774, 813, 918, 969
NmuCI	GTSAC	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	822
PcsI	WCGNNNNNNNCGW	4 cut(s)	48, 114, 219, 507
PdiI	GCCGGC	1 cut(s)	333
PfeI	GAWTC	8 cut(s)	371, 446, 512, 614, 677, 764, 1109, 1115
Pfl23II	CGTACG	1 cut(s)	63
PflMI	CCANNNNNTGG	4 cut(s)	572, 803, 851, 992
PkrI	GCNGC	8 cut(s)	202, 786, 858, 972, 1076, 1100, 1203, 1208
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	3 cut(s)	130, 865, 1169
PluTI	GGCGCC	3 cut(s)	103, 509, 611
PpsI	GAGTC	3 cut(s)	130, 865, 1169
Psp6I	CCWGG	5 cut(s)	262, 349, 922, 1014, 1078
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	5 cut(s)	262, 349, 922, 1014, 1078
PspLI	CGTACG	1 cut(s)	63
PspPI	GGNCC	8 cut(s)	266, 324, 366, 441, 858, 951, 999, 1012
PsuI	RGATCY	5 cut(s)	473, 524, 575, 626, 728
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	272, 719
SapI	GCTCTTC	1 cut(s)	822
SatI	GCNGC	8 cut(s)	201, 785, 857, 971, 1075, 1099, 1202, 1207
Sau3AI	GATC	7 cut(s)	52, 166, 473, 524, 575, 626, 728
Sau96I	GGNCC	8 cut(s)	266, 324, 366, 441, 858, 951, 999, 1012
SchI	GAGTC	3 cut(s)	131, 865, 1169
ScrFI	CCNGG	8 cut(s)	264, 288, 351, 459, 924, 1002, 1016, 1080
SduI	GDGCHC	2 cut(s)	198, 459
SfoI	GGCGCC	3 cut(s)	101, 507, 609
SinI	GGWCC	2 cut(s)	266, 951
Sse9I	AATT	1 cut(s)	722
SspDI	GGCGCC	3 cut(s)	99, 505, 607
StyD4I	CCNGG	8 cut(s)	262, 286, 349, 457, 922, 1000, 1014, 1078
TaaI	ACNGT	6 cut(s)	68, 536, 587, 638, 758, 1136
TaqI	TCGA	7 cut(s)	42, 108, 159, 222, 538, 589, 640
TasI	AATT	1 cut(s)	722
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	6 cut(s)	203, 787, 859, 973, 1077, 1209
TfiI	GAWTC	8 cut(s)	371, 446, 512, 614, 677, 764, 1109, 1115
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	2 cut(s)	1098, 1201
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	2 cut(s)	42, 690
Van91I	CCANNNNNTGG	4 cut(s)	572, 803, 851, 992
VpaK11BI	GGWCC	2 cut(s)	266, 951
XapI	RAATTY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.