Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

3632349 .. 3638432

Gene Structure 6084 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1054800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGACGCGTTACCGCTCGTACTACGCGACGAAGGATACCAACGACGGCGCTGACATGTTCGACGAGTATGACCCGACGCCGTACGAGGGCGGGTACGACATGGGATTGACGTATGGCCGGCCTCTACAACCTACGGAGAAGACGTGCTACCGCCACTCGTCGGGGTCGGCCTCCGATGATAGCAATGAGCCGGAGTTCCCGTCGTGCAAGGAGTCGTCTGCATACGACGAGGAGGCCGTGAAAGAGGAGTACAGCAGCTACGCCCGACCGTCGCACGAGGGCGACCAGTACAATATTGGGAAACAGAATATGGGTGGTGGGAAAGAGAAGGGGTATGGAGAAGGGCGGAAAAGCAGGTCTTTTGACGACGAGGAGAGTACTCCTGCAGGGGAAGGAGGCTATGGTCGCAAGAAATATTCTACGTCTCCTGGTGGCAGTCGATCATCATGGTGGCCGGGATGCTGTACTAGCGACCAAGCAATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008289 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

17.97

Weight (kDa)

4.71

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	345
AccBSI	CCGCTC	1 cut(s)	15
AccII	CGCG	2 cut(s)	7, 26
AciI	CCGC	4 cut(s)	13, 90, 151, 346
AcoI	YGGCCR	2 cut(s)	115, 452
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	7 cut(s)	20, 83, 95, 251, 290, 379, 466
AfiI	CCNNNNNNNGG	2 cut(s)	86, 160
AflIII	ACRYGT	2 cut(s)	5, 54
AjiI	CACGTC	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	1 cut(s)	258
AluI	AGCT	1 cut(s)	258
Alw26I	GTCTC	1 cut(s)	429
AoxI	GGCC	5 cut(s)	115, 119, 168, 234, 452
ApeKI	GCWGC	1 cut(s)	255
AspLEI	GCGC	1 cut(s)	50
AsuC2I	CCSGG	1 cut(s)	456
BarI	GAAGNNNNNNTAC	2 cut(s)	131, 163
BauI	CACGAG	1 cut(s)	275
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	1 cut(s)	267
BceAI	ACGGC	3 cut(s)	61, 64, 221
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	28
BcnI	CCSGG	1 cut(s)	456
BcoDI	GTCTC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	51
BfuAI	ACCTGC	1 cut(s)	345
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	1 cut(s)	256
BlsI	GCNGC	1 cut(s)	257
BmcAI	AGTACT	1 cut(s)	379
Bme1390I	CCNGG	2 cut(s)	429, 456
BmgBI	CACGTC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	429, 456
BmsI	GCATC	1 cut(s)	449
BpiI	GAAGAC	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	456
BsaHI	GRCGYC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 160
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	286
Bse3DI	GCAATG	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	429
BseGI	GGATG	1 cut(s)	464
BseLI	CCNNNNNNNGG	2 cut(s)	86, 160
BseMI	GCAATG	1 cut(s)	190
BseNI	ACTGG	1 cut(s)	286
BseRI	GAGGAG	3 cut(s)	245, 260, 386
BseXI	GCAGC	1 cut(s)	267
Bsh1236I	CGCG	2 cut(s)	7, 26
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	5 cut(s)	117, 121, 170, 236, 454
BsiEI	CGRYCG	1 cut(s)	269
BsiSI	CCGG	3 cut(s)	118, 191, 455
BsiWI	CGTACG	1 cut(s)	81
BslI	CCNNNNNNNGG	2 cut(s)	86, 160
BsmAI	GTCTC	1 cut(s)	429
BsmBI	CGTCTC	1 cut(s)	429
BsnI	GGCC	5 cut(s)	117, 121, 170, 236, 454
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	4 cut(s)	13, 90, 151, 346
BspANI	GGCC	5 cut(s)	117, 121, 170, 236, 454
BspFNI	CGCG	2 cut(s)	7, 26
BspMAI	CTGCAG	1 cut(s)	388
BspMI	ACCTGC	1 cut(s)	345
BsrBI	CCGCTC	1 cut(s)	15
BsrDI	GCAATG	1 cut(s)	190
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	286
BssAI	RCCGGY	1 cut(s)	117
BssMI	GATC	1 cut(s)	440
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	119
BstF5I	GGATG	1 cut(s)	464
BstFNI	CGCG	2 cut(s)	7, 26
BstH2I	RGCGCY	1 cut(s)	51
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	1 cut(s)	440
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	405, 468
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	58
BstSCI	CCNGG	2 cut(s)	427, 454
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	2 cut(s)	7, 26
BstV1I	GCAGC	1 cut(s)	267
BstV2I	GAAGAC	1 cut(s)	146
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	5 cut(s)	117, 121, 170, 236, 454
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	345
Cac8I	GCNNGC	1 cut(s)	119
CfoI	GCGC	1 cut(s)	50
Cfr10I	RCCGGY	1 cut(s)	117
CseI	GACGC	2 cut(s)	13, 85
Csp6I	GTAC	7 cut(s)	19, 82, 94, 250, 289, 378, 465
CviAII	CATG	3 cut(s)	55, 100, 447
CviJI	RGCY	8 cut(s)	117, 121, 170, 190, 236, 258, 399, 454
CviKI_1	RGCY	8 cut(s)	117, 121, 170, 190, 236, 258, 399, 454
CviQI	GTAC	7 cut(s)	19, 82, 94, 250, 289, 378, 465
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	2 cut(s)	115, 452
EciI	GGCGGA	1 cut(s)	361
EcoRII	CCWGG	1 cut(s)	427
Esp3I	CGTCTC	1 cut(s)	429
FaeI	CATG	3 cut(s)	58, 103, 450
FaiI	YATR	9 cut(s)	56, 69, 101, 114, 223, 311, 336, 402, 448
FalI	AAGNNNNNCTT	2 cut(s)	343, 375
FatI	CATG	3 cut(s)	54, 99, 446
FauI	CCCGC	1 cut(s)	83
Fnu4HI	GCNGC	1 cut(s)	256
FokI	GGATG	1 cut(s)	471
FseI	GGCCGGCC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	256
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	256
HaeII	RGCGCY	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	117, 121, 170, 236, 454
HapII	CCGG	3 cut(s)	118, 191, 455
HgaI	GACGC	2 cut(s)	13, 85
HhaI	GCGC	1 cut(s)	50
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	3 cut(s)	58, 103, 450
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HinfI	GANTC	1 cut(s)	212
HpaII	CCGG	3 cut(s)	118, 191, 455
Hpy188I	TCNGA	1 cut(s)	175
Hpy99I	CGWCG	9 cut(s)	31, 47, 65, 79, 163, 205, 230, 274, 371
HpyAV	CCTTC	4 cut(s)	25, 322, 335, 386
HpyCH4III	ACNGT	1 cut(s)	270
HpyCH4IV	ACGT	3 cut(s)	110, 143, 422
HpyCH4V	TGCA	3 cut(s)	207, 221, 386
HpyF10VI	GCNNNNNNNGC	2 cut(s)	405, 468
HpySE526I	ACGT	3 cut(s)	110, 143, 422
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	58, 103, 450
HspAI	GCGC	1 cut(s)	48
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
Kzo9I	GATC	1 cut(s)	440
LpnPI	CCDG	9 cut(s)	131, 204, 299, 340, 372, 396, 414, 441, 468
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	1 cut(s)	449
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	110, 143, 422
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	1 cut(s)	442
MbiI	CCGCTC	1 cut(s)	15
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	151
MluCI	AATT	1 cut(s)	480
MluI	ACGCGT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	9 cut(s)	79, 132, 181, 223, 226, 238, 271, 364, 389
MroNI	GCCGGC	1 cut(s)	117
MslI	CAYNNNNRTG	1 cut(s)	448
MspI	CCGG	3 cut(s)	118, 191, 455
MspR9I	CCNGG	2 cut(s)	429, 456
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	7, 26
MwoI	GCNNNNNNNGC	2 cut(s)	405, 468
NaeI	GCCGGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	456
NdeII	GATC	1 cut(s)	440
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	58, 103, 450
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	3 cut(s)	23, 140, 234
PdiI	GCCGGC	1 cut(s)	119
Pfl23II	CGTACG	1 cut(s)	81
PkrI	GCNGC	1 cut(s)	257
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	427
PspGI	CCWGG	1 cut(s)	427
PspLI	CGTACG	1 cut(s)	81
PstI	CTGCAG	1 cut(s)	388
RigI	GGCCGGCC	1 cut(s)	121
RsaI	GTAC	7 cut(s)	20, 83, 95, 251, 290, 379, 466
RsaNI	GTAC	7 cut(s)	19, 82, 94, 250, 289, 378, 465
RseI	CAYNNNNRTG	1 cut(s)	448
SatI	GCNGC	1 cut(s)	256
Sau3AI	GATC	1 cut(s)	440
SbfI	CCTGCAGG	1 cut(s)	388
ScaI	AGTACT	1 cut(s)	379
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	429, 456
SdaI	CCTGCAGG	1 cut(s)	388
SetI	ASST	6 cut(s)	113, 133, 146, 260, 359, 425
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse8387I	CCTGCAGG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	4 cut(s)	13, 90, 151, 346
SspI	AATATT	2 cut(s)	295, 416
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	427, 454
TaaI	ACNGT	1 cut(s)	270
TaiI	ACGT	3 cut(s)	113, 146, 425
TaqI	TCGA	2 cut(s)	60, 439
TasI	AATT	1 cut(s)	480
TatI	WGTACW	4 cut(s)	249, 288, 377, 464
TseI	GCWGC	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	149
XceI	RCATGY	1 cut(s)	58
XcmI	CCANNNNNNNNNTGG	1 cut(s)	293
XspI	CTAG	1 cut(s)	468
ZrmI	AGTACT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.