Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

62388779 .. 62389246

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG389900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGACGCATTACTACACGTATTTCAAGAATAATGAAAACAGCGGGAATGATATTGAAGATTATGATCCGACACCATATCAAGGTGGATACGACATGCCCTTGACGTATGGTCGTCCTCTTCCACCGTCGGAGAAGATATGTTTCTGTCACTTGGCATCACCGGCAGAGGAGGACGACTACAACCCACCAGAGTTCTCGTCATTGTCAGAACCAAACGCATATGACGAGGAGGCGATGGATACTGAATACACCAGCTACACCCGACCTTCCCATGAGGCAAACCATGAATATTCAGGTGTTGACCGTAATTTAAAGCAGCAGCAGAAGCCAAGTGAGTCCTATAAGAAGGAGGAGAATGCTCTGGTCTGTGAAGGAAGCTATGGTCGCAAGAAAAATGCAAGTTCATCCGCTGCTACTCGGTCATCTTGGTGGCCGGTGTGTTGTAGTAGTGACGACGCAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

155

Amino Acids

17.65

Weight (kDa)

4.53

Isoelectric Point (pI)

64.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	42, 408
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	431
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	25, 56
AhdI	GACNNNNNGTC	1 cut(s)	108
AluBI	AGCT	2 cut(s)	255, 378
AluI	AGCT	2 cut(s)	255, 378
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	431
ApeKI	GCWGC	3 cut(s)	316, 319, 410
AsuHPI	GGTGA	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	328, 331, 397
BccI	CCATC	1 cut(s)	229
BciVI	GTATCC	2 cut(s)	80, 232
BfuI	GTATCC	2 cut(s)	80, 232
BisI	GCNGC	3 cut(s)	317, 320, 411
BlsI	GCNGC	3 cut(s)	318, 321, 412
BmeRI	GACNNNNNGTC	1 cut(s)	108
BmsI	GCATC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	18
BsaBI	GATNNNNATC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
Bse118I	RCCGGY	2 cut(s)	160, 433
Bse8I	GATNNNNATC	1 cut(s)	63
BseGI	GGATG	1 cut(s)	404
BseJI	GATNNNNATC	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseRI	GAGGAG	3 cut(s)	182, 242, 365
BseXI	GCAGC	3 cut(s)	328, 331, 397
BshFI	GGCC	1 cut(s)	433
BsiSI	CCGG	2 cut(s)	161, 434
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	1 cut(s)	433
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	42, 408
BspANI	GGCC	1 cut(s)	433
BspPI	GGATC	1 cut(s)	59
BsrFI	RCCGGY	2 cut(s)	160, 433
BssAI	RCCGGY	2 cut(s)	160, 433
BssMI	GATC	1 cut(s)	64
Bst4CI	ACNGT	2 cut(s)	126, 305
Bst6I	CTCTTC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	18
BstF5I	GGATG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	161, 325, 384
BstNSI	RCATGY	1 cut(s)	97
BstV1I	GCAGC	3 cut(s)	328, 331, 397
BsuI	GTATCC	2 cut(s)	80, 232
BsuRI	GGCC	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	404
Cfr10I	RCCGGY	2 cut(s)	160, 433
CseI	GACGC	1 cut(s)	13
CviAII	CATG	3 cut(s)	94, 272, 284
CviJI	RGCY	4 cut(s)	255, 328, 378, 433
CviKI_1	RGCY	4 cut(s)	255, 328, 378, 433
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraI	TTTAAA	1 cut(s)	312
DriI	GACNNNNNGTC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	123
Eam1105I	GACNNNNNGTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	123
FaeI	CATG	3 cut(s)	97, 275, 287
FatI	CATG	3 cut(s)	93, 271, 283
FauI	CCCGC	1 cut(s)	35
FauNDI	CATATG	1 cut(s)	220
Fnu4HI	GCNGC	3 cut(s)	317, 320, 411
FokI	GGATG	1 cut(s)	391
Fsp4HI	GCNGC	3 cut(s)	317, 320, 411
GluI	GCNGC	3 cut(s)	317, 320, 411
HaeIII	GGCC	1 cut(s)	433
HapII	CCGG	2 cut(s)	161, 434
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	3 cut(s)	97, 275, 287
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	1 cut(s)	335
HpaII	CCGG	2 cut(s)	161, 434
HphI	GGTGA	1 cut(s)	150
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	3 cut(s)	69, 130, 208
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	2 cut(s)	130, 458
HpyAV	CCTTC	3 cut(s)	276, 340, 365
HpyCH4III	ACNGT	2 cut(s)	126, 305
HpyCH4IV	ACGT	2 cut(s)	17, 104
HpyCH4V	TGCA	1 cut(s)	398
HpyF10VI	GCNNNNNNNGC	3 cut(s)	161, 325, 384
HpySE526I	ACGT	2 cut(s)	17, 104
Hsp92II	CATG	3 cut(s)	97, 275, 287
Kzo9I	GATC	1 cut(s)	64
LpnPI	CCDG	6 cut(s)	174, 201, 265, 279, 347, 447
Lsp1109I	GCAGC	3 cut(s)	328, 331, 397
LweI	GCATC	1 cut(s)	164
MaeII	ACGT	2 cut(s)	17, 104
MaeIII	GTNAC	2 cut(s)	146, 449
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	3 cut(s)	68, 110, 145
MluCI	AATT	2 cut(s)	307, 459
MlyI	GAGTC	1 cut(s)	344
MmeI	TCCRAC	2 cut(s)	92, 108
MnlI	CCTC	7 cut(s)	126, 160, 163, 220, 223, 268, 343
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	427
MspA1I	CMGCKG	2 cut(s)	42, 410
MspI	CCGG	2 cut(s)	161, 434
Mva1269I	GAATGC	1 cut(s)	361
MwoI	GCNNNNNNNGC	3 cut(s)	161, 325, 384
NdeI	CATATG	1 cut(s)	220
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	97, 275, 287
NmuCI	GTSAC	2 cut(s)	146, 449
NspI	RCATGY	1 cut(s)	97
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PctI	GAATGC	1 cut(s)	361
PkrI	GCNGC	3 cut(s)	318, 321, 412
PleI	GAGTC	1 cut(s)	343
PpsI	GAGTC	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	18
RseI	CAYNNNNRTG	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	317, 320, 411
Sau3AI	GATC	1 cut(s)	64
SchI	GAGTC	1 cut(s)	344
SetI	ASST	7 cut(s)	20, 85, 107, 257, 268, 298, 380
SfaNI	GCATC	1 cut(s)	164
SmiMI	CAYNNNNRTG	1 cut(s)	427
Sse9I	AATT	2 cut(s)	307, 459
SsiI	CCGC	2 cut(s)	42, 408
SspI	AATATT	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	126, 305
TaiI	ACGT	2 cut(s)	20, 107
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	2 cut(s)	307, 459
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseFI	GTSAC	2 cut(s)	146, 449
TseI	GCWGC	3 cut(s)	316, 319, 410
Tsp45I	GTSAC	2 cut(s)	146, 449
TspDTI	ATGAA	3 cut(s)	48, 300, 393
XceI	RCATGY	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.