Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

3628568 .. 3630948

Gene Structure 2381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1054700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGCCGTACTACACGCACGCCGGGGATGAAGCCACTGACTTCGATGAGTACGATCCGACGCCCTACGGCGGGGGATACGACATTTACCTGACCTTCGGCCGCCCTCTCGACCCGTCCGATGAGACCTGCTACCCCAACTCATCGCCGTCTGATGATTTCGATTACGAGCGCCCCCAGTTCTCGTCGTACTCCGAGCCCTCCGCCTACGCCGACGAGGCTCTCGAAGACGAGTACACACACTACGCCCGACCCGCGCACCGACCCGGACCAGCTGTCGGGTTCAATCCTGGCGGGGGACATCCAGAGGGAGAGTACGAAGGCAGGCCCCAGCCGGCATATGGGTTCCAGCCTGGTGGGGAGGAGAGACCCGAGTTCGGATCCGAGAGGCCTGAATCGGGTTATGGTCGGAAGCCCGAGTATGGACAATCCGGTTCGGAATACGGGTCTGGGTATCAACGAAGGCCCGAAGCTGATGAGCCCAGCTCCGAATATACTGGTTACGGTCGGAAGCCAGAACACGAGGAGCCCGAATCGGAGTATGGATCTGGGCACGGGCGAAAGCCCGAGTATAAGGCACCCGAACCCGAGTATGGATCTGGGTACGGGAGAAAGCCCGAGTACGAGGCACCCGAGTCCGAATATGGATCTGGGTACGGGCGAAAGCCCGAGTTTGAGGCACCGCCAGCTGAATTCGGATCTGGGTATGGTCGGAAGCCGAGCTACGGTGAGGAATCTGGTTATGGCGAAGAGCCACCGAGAAAGCCGAGCTATGGTGAGGAGGGTAGTTATGGCGAAGAGCCGCCGAGAAGGCCAAGCTATGGGCGGCCGAGCTATGAGACGCCAGAAAGCGAGGAGAGGCCGAGCTATGGGAGTTCTGAGTTTGAGAGGCCAGGTCACGGCGAAGAGCCGCCGAGGAGGACCGGCTATGGAGATGAGCCGCCACCGCCTAGGAGGACCGGCTATGGAGATGAGCCGCCACCGCCGAGGAGGACTGGCTATGGAGATGAGCCGCCACCGCCGAGGAGGACCGGGTATGGAGATGAGCCGCCACCGCCGAGGATGACCGGTTATGGAGATGAGCCACCACCGCCGAGGATGACCGGTTATGGAGATGAGCCGCCACCCCCGAGGCCTAGCTATGAGAGGCCCAGCTATGAGGGCCAGGAAAGTGGGGAGTACGAGAAGCCCAGTTATGGGAGGAGCGAGGAGCAGAAGTACGGTGAAGAAGGCTATGGTCGCAAGAAATATGGAAATGACGACTCAGATGACGATGAGGAGAAAAAGCAGCGCCGCCACAAGCACCACCATCGCAAGAGCTATGACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

49.85

Weight (kDa)

4.68

Isoelectric Point (pI)

67.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccB1I	GGYRCC	3 cut(s)	574, 625, 676
AccB7I	CCANNNNNTGG	1 cut(s)	818
AccII	CGCG	1 cut(s)	254
AclWI	GGATC	7 cut(s)	47, 372, 385, 550, 601, 652, 703
AcoI	YGGCCR	2 cut(s)	97, 824
AcsI	RAATTY	1 cut(s)	689
AcyI	GRCGYC	2 cut(s)	59, 839
AgeI	ACCGGT	2 cut(s)	1064, 1100
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	4 cut(s)	286, 349, 889, 1161
Alw26I	GTCTC	3 cut(s)	116, 358, 830
AlwI	GGATC	7 cut(s)	47, 372, 385, 550, 601, 652, 703
Ama87I	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
ApeKI	GCWGC	1 cut(s)	1285
ApoI	RAATTY	1 cut(s)	689
AsiGI	ACCGGT	2 cut(s)	1064, 1100
AspA2I	CCTAGG	1 cut(s)	947
AspLEI	GCGC	3 cut(s)	171, 256, 1290
AspS9I	GGNCC	8 cut(s)	266, 324, 462, 918, 954, 1026, 1146, 1159
AsuC2I	CCSGG	3 cut(s)	22, 264, 1030
AsuHPI	GGTGA	3 cut(s)	737, 785, 1232
AvaI	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
AvaII	GGWCC	4 cut(s)	266, 918, 954, 1026
AvrII	CCTAGG	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	3 cut(s)	574, 625, 676
BanII	GRGCYC	3 cut(s)	198, 480, 528
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	1297
BccI	CCATC	1 cut(s)	1314
BceAI	ACGGC	3 cut(s)	82, 130, 913
BcgI	CGANNNNNNTGC	2 cut(s)	1289, 1323
BciT130I	CCWGG	4 cut(s)	288, 351, 891, 1163
BciVI	GTATCC	1 cut(s)	68
BcnI	CCSGG	3 cut(s)	22, 264, 1030
BcoDI	GTCTC	3 cut(s)	116, 358, 830
BfaI	CTAG	2 cut(s)	948, 1134
BfoI	RGCGCY	2 cut(s)	172, 1291
BfuAI	ACCTGC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	68
BglI	GCCNNNNNGGC	2 cut(s)	215, 808
BlnI	CCTAGG	1 cut(s)	947
Bme1390I	CCNGG	7 cut(s)	22, 264, 288, 351, 891, 1030, 1163
Bme18I	GGWCC	4 cut(s)	266, 918, 954, 1026
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmeT110I	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
BmgT120I	GGNCC	8 cut(s)	266, 324, 462, 918, 954, 1026, 1146, 1159
BmiI	GGNNCC	7 cut(s)	326, 344, 379, 525, 576, 627, 678
BmrFI	CCNGG	7 cut(s)	22, 264, 288, 351, 891, 1030, 1163
BmrI	ACTGGG	2 cut(s)	169, 1182
BmuI	ACTGGG	2 cut(s)	169, 1182
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
BpuMI	CCSGG	3 cut(s)	22, 264, 1030
BsaHI	GRCGYC	2 cut(s)	59, 839
BsaI	GGTCTC	2 cut(s)	116, 358
BsaJI	CCNNGG	8 cut(s)	21, 911, 947, 983, 1019, 1055, 1091, 1127
BsaWI	WCCGGW	3 cut(s)	428, 1064, 1100
BsaXI	ACNNNNNCTCC	2 cut(s)	1199, 1229
Bse118I	RCCGGY	5 cut(s)	331, 920, 956, 1064, 1100
Bse1I	ACTGG	4 cut(s)	175, 499, 997, 1188
BseBI	CCWGG	4 cut(s)	288, 351, 891, 1163
BseDI	CCNNGG	8 cut(s)	21, 911, 947, 983, 1019, 1055, 1091, 1127
BseGI	GGATG	4 cut(s)	31, 298, 1065, 1101
BseMII	CTCAG	2 cut(s)	867, 1275
BseNI	ACTGG	4 cut(s)	175, 499, 997, 1188
BseSI	GKGCMC	1 cut(s)	552
BseX3I	CGGCCG	2 cut(s)	97, 824
BseXI	GCAGC	1 cut(s)	1297
BseYI	CCCAGC	3 cut(s)	327, 479, 1148
Bsh1236I	CGCG	1 cut(s)	254
Bsh1285I	CGRYCG	3 cut(s)	100, 505, 827
BshNI	GGYRCC	3 cut(s)	574, 625, 676
BshTI	ACCGGT	2 cut(s)	1064, 1100
BsiEI	CGRYCG	3 cut(s)	100, 505, 827
BsiHKCI	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
BsiSI	CCGG	9 cut(s)	21, 264, 332, 429, 921, 957, 1029, 1065, 1101
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	3 cut(s)	116, 358, 830
BsmBI	CGTCTC	1 cut(s)	830
BsmFI	GGGAC	1 cut(s)	309
Bso31I	GGTCTC	2 cut(s)	116, 358
BsoBI	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
Bsp1286I	GDGCHC	4 cut(s)	198, 480, 528, 552
Bsp143I	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
BspCNI	CTCAG	2 cut(s)	868, 1274
BspFNI	CGCG	1 cut(s)	254
BspLI	GGNNCC	7 cut(s)	326, 344, 379, 525, 576, 627, 678
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	7 cut(s)	47, 372, 385, 550, 601, 652, 703
BspQI	GCTCTTC	3 cut(s)	741, 789, 897
BspT107I	GGYRCC	3 cut(s)	574, 625, 676
BspTNI	GGTCTC	2 cut(s)	116, 358
BsrFI	RCCGGY	5 cut(s)	331, 920, 956, 1064, 1100
BsrI	ACTGG	4 cut(s)	175, 499, 997, 1188
BssAI	RCCGGY	5 cut(s)	331, 920, 956, 1064, 1100
BssECI	CCNNGG	8 cut(s)	21, 911, 947, 983, 1019, 1055, 1091, 1127
BssMI	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
BssNI	GRCGYC	2 cut(s)	59, 839
BssSI	CACGAG	1 cut(s)	518
BssT1I	CCWWGG	1 cut(s)	947
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	4 cut(s)	288, 351, 891, 1163
Bst4CI	ACNGT	3 cut(s)	503, 725, 1220
Bst6I	CTCTTC	3 cut(s)	741, 789, 897
BstACI	GRCGYC	2 cut(s)	59, 839
BstC8I	GCNNGC	4 cut(s)	18, 323, 333, 684
BstDEI	CTNAG	2 cut(s)	876, 1261
BstF5I	GGATG	4 cut(s)	31, 298, 1065, 1101
BstFNI	CGCG	1 cut(s)	254
BstH2I	RGCGCY	2 cut(s)	172, 1291
BstHHI	GCGC	3 cut(s)	171, 256, 1290
BstKTI	GATC	6 cut(s)	55, 380, 545, 596, 647, 698
BstMAI	GTCTC	3 cut(s)	116, 358, 830
BstMBI	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
BstMCI	CGRYCG	3 cut(s)	100, 505, 827
BstNI	CCWGG	4 cut(s)	288, 351, 891, 1163
BstSCI	CCNGG	7 cut(s)	20, 262, 286, 349, 889, 1028, 1161
BstSLI	GKGCMC	1 cut(s)	552
BstUI	CGCG	1 cut(s)	254
BstV1I	GCAGC	1 cut(s)	1297
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	5 cut(s)	377, 542, 593, 644, 695
BstXI	CCANNNNNNTGG	2 cut(s)	353, 1169
BstYI	RGATCY	5 cut(s)	377, 542, 593, 644, 695
BstZI	CGGCCG	2 cut(s)	97, 824
BsuI	GTATCC	1 cut(s)	68
BtgZI	GCGATG	2 cut(s)	126, 1292
BtsCI	GGATG	4 cut(s)	31, 298, 1065, 1101
BtsIMutI	CAGTG	1 cut(s)	33
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	18, 323, 333, 684
CfoI	GCGC	3 cut(s)	171, 256, 1290
Cfr10I	RCCGGY	5 cut(s)	331, 920, 956, 1064, 1100
Cfr13I	GGNCC	8 cut(s)	266, 324, 462, 918, 954, 1026, 1146, 1159
CseI	GACGC	2 cut(s)	67, 847
CspAI	ACCGGT	2 cut(s)	1064, 1100
DdeI	CTNAG	2 cut(s)	876, 1261
DpnI	GATC	6 cut(s)	54, 379, 544, 595, 646, 697
DpnII	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	2 cut(s)	97, 824
EagI	CGGCCG	2 cut(s)	97, 824
Eam1104I	CTCTTC	3 cut(s)	741, 789, 897
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	3 cut(s)	741, 789, 897
EciI	GGCGGA	1 cut(s)	190
EclXI	CGGCCG	2 cut(s)	97, 824
Eco130I	CCWWGG	1 cut(s)	947
Eco147I	AGGCCT	2 cut(s)	388, 1132
Eco24I	GRGCYC	3 cut(s)	198, 480, 528
Eco31I	GGTCTC	2 cut(s)	116, 358
Eco47I	GGWCC	4 cut(s)	266, 918, 954, 1026
Eco52I	CGGCCG	2 cut(s)	97, 824
Eco88I	CYCGRG	8 cut(s)	368, 413, 563, 584, 614, 629, 665, 1126
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	689
EcoRII	CCWGG	4 cut(s)	286, 349, 889, 1161
EcoT14I	CCWWGG	1 cut(s)	947
EcoT38I	GRGCYC	3 cut(s)	198, 480, 528
ErhI	CCWWGG	1 cut(s)	947
Esp3I	CGTCTC	1 cut(s)	830
FaqI	GGGAC	1 cut(s)	309
FauI	CCCGC	3 cut(s)	62, 259, 284
FauNDI	CATATG	1 cut(s)	337
FokI	GGATG	4 cut(s)	38, 285, 1072, 1108
FriOI	GRGCYC	3 cut(s)	198, 480, 528
FspBI	CTAG	2 cut(s)	948, 1134
GlaI	GCGC	3 cut(s)	170, 255, 1289
GsaI	CCCAGC	3 cut(s)	331, 483, 1152
HaeII	RGCGCY	2 cut(s)	172, 1291
HapII	CCGG	9 cut(s)	21, 264, 332, 429, 921, 957, 1029, 1065, 1101
HgaI	GACGC	2 cut(s)	67, 847
HhaI	GCGC	3 cut(s)	171, 256, 1290
Hin1I	GRCGYC	2 cut(s)	59, 839
Hin6I	GCGC	3 cut(s)	169, 254, 1288
HinP1I	GCGC	3 cut(s)	169, 254, 1288
HinfI	GANTC	5 cut(s)	392, 530, 632, 731, 1259
HpaII	CCGG	9 cut(s)	21, 264, 332, 429, 921, 957, 1029, 1065, 1101
HphI	GGTGA	3 cut(s)	737, 785, 1232
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	3 cut(s)	107, 221, 302
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	3 cut(s)	61, 187, 215
HpyAV	CCTTC	5 cut(s)	103, 311, 453, 801, 1220
HpyCH4III	ACNGT	3 cut(s)	503, 725, 1220
HpyF3I	CTNAG	2 cut(s)	876, 1261
Hsp92I	GRCGYC	2 cut(s)	59, 839
HspAI	GCGC	3 cut(s)	169, 254, 1288
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
Kzo9I	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
LguI	GCTCTTC	3 cut(s)	741, 789, 897
LmnI	GCTCC	4 cut(s)	488, 523, 1200, 1207
Lsp1109I	GCAGC	1 cut(s)	1297
MaeI	CTAG	2 cut(s)	948, 1134
MaeIII	GTNAC	2 cut(s)	497, 893
MalI	GATC	6 cut(s)	54, 379, 544, 595, 646, 697
MboI	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
MboII	GAAGA	5 cut(s)	236, 758, 806, 914, 1235
MflI	RGATCY	5 cut(s)	377, 542, 593, 644, 695
MhlI	GDGCHC	4 cut(s)	198, 480, 528, 552
MluCI	AATT	1 cut(s)	689
MlyI	GAGTC	2 cut(s)	641, 1253
MmeI	TCCRAC	4 cut(s)	80, 386, 485, 689
MroNI	GCCGGC	1 cut(s)	331
MspA1I	CMGCKG	2 cut(s)	272, 686
MspI	CCGG	9 cut(s)	21, 264, 332, 429, 921, 957, 1029, 1065, 1101
MspR9I	CCNGG	7 cut(s)	22, 264, 288, 351, 891, 1030, 1163
MvaI	CCWGG	4 cut(s)	288, 351, 891, 1163
MvnI	CGCG	1 cut(s)	254
NaeI	GCCGGC	1 cut(s)	333
NciI	CCSGG	3 cut(s)	22, 264, 1030
NdeI	CATATG	1 cut(s)	337
NdeII	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
NgoMIV	GCCGGC	1 cut(s)	331
NlaIV	GGNNCC	7 cut(s)	326, 344, 379, 525, 576, 627, 678
NmuCI	GTSAC	1 cut(s)	893
PceI	AGGCCT	2 cut(s)	388, 1132
PciSI	GCTCTTC	3 cut(s)	741, 789, 897
PcsI	WCGNNNNNNNCGW	5 cut(s)	48, 114, 219, 525, 627
PdiI	GCCGGC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	392, 530, 731
PflMI	CCANNNNNTGG	1 cut(s)	818
PinAI	ACCGGT	2 cut(s)	1064, 1100
PleI	GAGTC	2 cut(s)	640, 1253
PpsI	GAGTC	2 cut(s)	640, 1253
Psp6I	CCWGG	4 cut(s)	286, 349, 889, 1161
PspFI	CCCAGC	3 cut(s)	327, 479, 1148
PspGI	CCWGG	4 cut(s)	286, 349, 889, 1161
PspN4I	GGNNCC	7 cut(s)	326, 344, 379, 525, 576, 627, 678
PspPI	GGNCC	8 cut(s)	266, 324, 462, 918, 954, 1026, 1146, 1159
PsuI	RGATCY	5 cut(s)	377, 542, 593, 644, 695
PvuII	CAGCTG	2 cut(s)	272, 686
SapI	GCTCTTC	3 cut(s)	741, 789, 897
Sau3AI	GATC	6 cut(s)	52, 377, 542, 593, 644, 695
Sau96I	GGNCC	8 cut(s)	266, 324, 462, 918, 954, 1026, 1146, 1159
SchI	GAGTC	2 cut(s)	641, 1253
ScrFI	CCNGG	7 cut(s)	22, 264, 288, 351, 891, 1030, 1163
SduI	GDGCHC	4 cut(s)	198, 480, 528, 552
SinI	GGWCC	4 cut(s)	266, 918, 954, 1026
Sse9I	AATT	1 cut(s)	689
SseBI	AGGCCT	2 cut(s)	388, 1132
SspMI	CTAG	2 cut(s)	948, 1134
StuI	AGGCCT	2 cut(s)	388, 1132
StyD4I	CCNGG	7 cut(s)	20, 262, 286, 349, 889, 1028, 1161
StyI	CCWWGG	1 cut(s)	947
TaaI	ACNGT	3 cut(s)	503, 725, 1220
TaqI	TCGA	4 cut(s)	42, 108, 159, 222
TasI	AATT	1 cut(s)	689
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	392, 530, 731
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	893
TseI	GCWGC	1 cut(s)	1285
Tsp45I	GTSAC	1 cut(s)	893
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	818
VpaK11BI	GGWCC	4 cut(s)	266, 918, 954, 1026
XapI	RAATTY	1 cut(s)	689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmaJI	CCTAGG	1 cut(s)	947
XspI	CTAG	2 cut(s)	948, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.