Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

36253450 .. 36255932

Gene Structure 2483 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48030.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCCGTACTACTCGCACAATCGCGAAGACGAAGTCCACGACTTCGACGAGTACGATCCGACCCCCTACGGCGGCGGATACGACCAAGCCCTCACCTACGGCCGCCCCCTCGCGCCTTCCGAGGAGACTTGCTACCCCAGCTCCTCCGCCCCCGACGACCAGGACGACTACGAACGCCCCGATCTCTCCTCCTACAGAGAGCCCTCCGCCTACGCCGACGAGGCTCTCAACAACGAGTACAGCAGCTACGAGCGTCGCAAGCCGCGACCCGGATTCGGTGGAGGTGGAAGACCCGATCATGACGGCGGTGAAGGTGGAGGAGAGTATGGATCTAGGCCTGGTAGGCCGCAGTATGGATCCGCGGAGCCTCAATCGGAGTATGGATCCAGGCCCGGTCGGCCTCAGTATGGATCCGAGGAGCCTCAATCGGAGTTTGGATCCGGTTACGGGCGAAAGCCGGAGTATCAGGCGCCTGAATCGGACTTTGGATCGGGTTTCGGGCGAAAACCGGAATATCAGGCGCCCGAATCGGAGTTTGGATCGGGTTATGGGAGGAAACCGGAGTACGAAGCGCCGGAACCGGAGTTTGGATCGGGTTTCGGGCGAAAAAAACCGGAGTACGAGGCGCCGGAACCGGAGTTTGGATCTGGTTACGGGCGAAAACCGGAGTTCCAGGCGCCCGAATCGGAGTTTGGATCGGGTTATGGGAGGAAACCGGAGTTCGAGGCGCCGGAACCGGAGTTTGGATCCGGATATGGAAGGAAACCCGAGTTTGAAGGCGGGCCAGGTTATGGCCGGAAGCCGAGTTATGGAGAGGAGGAGAGCGGTGGTTCATCACCGCCGAGGAGGCCTGGGTTTGGAAGGCCTGGTGGTTATGGAGAGGAGGAGACTGAGGAGAAGCCTAGTTATGGGAGGAGTGAGTATCAGGAGCCGCCGAGGAGGCCGAGTAGCTATGAGACGCCAGAGACTGAGGAGTATGGGAGGCCTAAATATGGCAGGCCTGGCTATGAGACACCTGAGACTGAGGAGTTCGGGAGGCCGAGTTATGGAAGAGGTGAGGAGCAGGAGTACCGCAAGCCTAAGCCTAGCTATGGGCGTGGCAGTGATGATGAGGATTCTGAGCGCCGTCATCAGAGGCGTGGCAGTGATGATGAGGATTCTGAGCGTCGTCATCAGAGGCGTGGTAGTGATGATGAGGACTCTGAGCATCGTCGGGGACATGGTGGAGAGGGCTATGGCCGCAAGAAATATGGAAATGACGACTCAGATGATGATGAAGAGAAAAAGGAACGTCGCCACCACCATCGTAAGAGCTATGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

49.93

Weight (kDa)

4.81

Isoelectric Point (pI)

70.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	469, 520, 625, 676, 727
AccB7I	CCANNNNNTGG	1 cut(s)	791
AccBSI	CCGCTC	1 cut(s)	825
AccII	CGCG	4 cut(s)	24, 113, 265, 362
AccIII	TCCGGA	1 cut(s)	749
AcoI	YGGCCR	3 cut(s)	100, 793, 1237
AcyI	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
AfaI	GTAC	6 cut(s)	8, 53, 239, 566, 620, 1070
AgsI	TTSAA	1 cut(s)	776
AjnI	CCWGG	8 cut(s)	159, 337, 386, 672, 784, 850, 865, 1000
AluBI	AGCT	5 cut(s)	141, 246, 951, 1089, 1314
AluI	AGCT	5 cut(s)	141, 246, 951, 1089, 1314
Alw26I	GTCTC	6 cut(s)	119, 881, 950, 959, 1004, 1013
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	767
Aor13HI	TCCGGA	1 cut(s)	749
ApeKI	GCWGC	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	18, 50
AspLEI	GCGC	8 cut(s)	115, 472, 523, 574, 628, 679, 730, 1125
AspS9I	GGNCC	2 cut(s)	390, 782
AsuC2I	CCSGG	2 cut(s)	270, 393
AsuHPI	GGTGA	4 cut(s)	85, 320, 828, 1067
AvaI	CYCGRG	1 cut(s)	767
BamHI	GGATCC	5 cut(s)	356, 383, 410, 437, 746
BanI	GGYRCC	5 cut(s)	469, 520, 625, 676, 727
BanII	GRGCYC	1 cut(s)	204
BbsI	GAAGAC	2 cut(s)	33, 295
BbvI	GCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	1311
BceAI	ACGGC	4 cut(s)	85, 115, 319, 1110
BciT130I	CCWGG	8 cut(s)	161, 339, 388, 674, 786, 852, 867, 1002
BciVI	GTATCC	1 cut(s)	71
BcnI	CCSGG	2 cut(s)	270, 393
BcoDI	GTCTC	6 cut(s)	119, 881, 950, 959, 1004, 1013
BfaI	CTAG	3 cut(s)	333, 903, 1086
BfmI	CTRYAG	1 cut(s)	193
BfoI	RGCGCY	7 cut(s)	473, 524, 575, 629, 680, 731, 1126
BfuI	GTATCC	1 cut(s)	71
BglI	GCCNNNNNGGC	5 cut(s)	221, 343, 397, 847, 940
BisI	GCNGC	7 cut(s)	73, 103, 244, 263, 347, 932, 1240
BlsI	GCNGC	7 cut(s)	74, 104, 245, 264, 348, 933, 1241
BmeT110I	CYCGRG	1 cut(s)	767
BmgT120I	GGNCC	2 cut(s)	390, 782
BmsI	GCATC	1 cut(s)	1216
BpiI	GAAGAC	2 cut(s)	33, 295
Bpu10I	CCTNAGC	1 cut(s)	1080
BpuMI	CCSGG	2 cut(s)	270, 393
BsaHI	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
BsaJI	CCNNGG	6 cut(s)	120, 360, 414, 842, 851, 935
BsaXI	ACNNNNNCTCC	8 cut(s)	125, 155, 931, 961, 1027, 1052, 1057, 1082
BseAI	TCCGGA	1 cut(s)	749
BseBI	CCWGG	8 cut(s)	161, 339, 388, 674, 786, 852, 867, 1002
BseDI	CCNNGG	6 cut(s)	120, 360, 414, 842, 851, 935
BseMII	CTCAG	9 cut(s)	416, 882, 960, 1008, 1014, 1110, 1152, 1194, 1278
BseX3I	CGGCCG	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	137
Bsh1236I	CGCG	4 cut(s)	24, 113, 265, 362
Bsh1285I	CGRYCG	2 cut(s)	103, 397
BshNI	GGYRCC	5 cut(s)	469, 520, 625, 676, 727
BsiEI	CGRYCG	2 cut(s)	103, 397
BsiHKCI	CYCGRG	1 cut(s)	767
BslFI	GGGAC	1 cut(s)	1230
BsmAI	GTCTC	6 cut(s)	119, 881, 950, 959, 1004, 1013
BsmBI	CGTCTC	1 cut(s)	950
BsmFI	GGGAC	1 cut(s)	1230
BsoBI	CYCGRG	1 cut(s)	767
Bsp1286I	GDGCHC	1 cut(s)	204
Bsp13I	TCCGGA	1 cut(s)	749
Bsp68I	TCGCGA	1 cut(s)	24
BspCNI	CTCAG	9 cut(s)	415, 883, 961, 1009, 1015, 1111, 1153, 1195, 1277
BspEI	TCCGGA	1 cut(s)	749
BspFNI	CGCG	4 cut(s)	24, 113, 265, 362
BspHI	TCATGA	1 cut(s)	298
BspT107I	GGYRCC	5 cut(s)	469, 520, 625, 676, 727
BsrBI	CCGCTC	1 cut(s)	825
BssECI	CCNNGG	6 cut(s)	120, 360, 414, 842, 851, 935
BssNI	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
Bst2UI	CCWGG	8 cut(s)	161, 339, 388, 674, 786, 852, 867, 1002
Bst6I	CTCTTC	2 cut(s)	1045, 1272
BstACI	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
BstC8I	GCNNGC	4 cut(s)	260, 782, 998, 1076
BstDSI	CCRYGG	1 cut(s)	360
BstFNI	CGCG	4 cut(s)	24, 113, 265, 362
BstH2I	RGCGCY	7 cut(s)	473, 524, 575, 629, 680, 731, 1126
BstHHI	GCGC	8 cut(s)	115, 472, 523, 574, 628, 679, 730, 1125
BstMAI	GTCTC	6 cut(s)	119, 881, 950, 959, 1004, 1013
BstMCI	CGRYCG	2 cut(s)	103, 397
BstMWI	GCNNNNNNNGC	9 cut(s)	138, 221, 259, 343, 397, 847, 940, 1002, 1239
BstNI	CCWGG	8 cut(s)	161, 339, 388, 674, 786, 852, 867, 1002
BstSFI	CTRYAG	1 cut(s)	193
BstUI	CGCG	4 cut(s)	24, 113, 265, 362
BstV1I	GCAGC	1 cut(s)	255
BstV2I	GAAGAC	2 cut(s)	33, 295
BstX2I	RGATCY	7 cut(s)	329, 356, 383, 410, 437, 644, 746
BstYI	RGATCY	7 cut(s)	329, 356, 383, 410, 437, 644, 746
BstZI	CGGCCG	1 cut(s)	100
BsuI	GTATCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	360
BtsI	GCAGTG	2 cut(s)	1108, 1150
BtsIMutI	CAGTG	2 cut(s)	1108, 1150
BtuMI	TCGCGA	1 cut(s)	24
Cac8I	GCNNGC	4 cut(s)	260, 782, 998, 1076
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	1 cut(s)	298
CfoI	GCGC	8 cut(s)	115, 472, 523, 574, 628, 679, 730, 1125
Cfr13I	GGNCC	2 cut(s)	390, 782
Cfr42I	CCGCGG	1 cut(s)	363
CseI	GACGC	3 cut(s)	242, 967, 1154
Csp6I	GTAC	6 cut(s)	7, 52, 238, 565, 619, 1069
CviAII	CATG	2 cut(s)	299, 1220
CviQI	GTAC	6 cut(s)	7, 52, 238, 565, 619, 1069
DinI	GGCGCC	5 cut(s)	471, 522, 627, 678, 729
EaeI	YGGCCR	3 cut(s)	100, 793, 1237
EagI	CGGCCG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	1045, 1272
EarI	CTCTTC	2 cut(s)	1045, 1272
EciI	GGCGGA	3 cut(s)	90, 136, 196
EclXI	CGGCCG	1 cut(s)	100
Eco147I	AGGCCT	5 cut(s)	337, 850, 865, 985, 1000
Eco24I	GRGCYC	1 cut(s)	204
Eco52I	CGGCCG	1 cut(s)	100
Eco88I	CYCGRG	1 cut(s)	767
EcoRII	CCWGG	8 cut(s)	159, 337, 386, 672, 784, 850, 865, 1000
EcoT38I	GRGCYC	1 cut(s)	204
EgeI	GGCGCC	5 cut(s)	471, 522, 627, 678, 729
EheI	GGCGCC	5 cut(s)	471, 522, 627, 678, 729
Esp3I	CGTCTC	1 cut(s)	950
FaeI	CATG	2 cut(s)	302, 1223
FaqI	GGGAC	1 cut(s)	1230
FatI	CATG	2 cut(s)	298, 1219
FauI	CCCGC	1 cut(s)	773
Fnu4HI	GCNGC	7 cut(s)	73, 103, 244, 263, 347, 932, 1240
FriOI	GRGCYC	1 cut(s)	204
Fsp4HI	GCNGC	7 cut(s)	73, 103, 244, 263, 347, 932, 1240
FspBI	CTAG	3 cut(s)	333, 903, 1086
GlaI	GCGC	8 cut(s)	114, 471, 522, 573, 627, 678, 729, 1124
GluI	GCNGC	7 cut(s)	73, 103, 244, 263, 347, 932, 1240
GsaI	CCCAGC	1 cut(s)	141
HaeII	RGCGCY	7 cut(s)	473, 524, 575, 629, 680, 731, 1126
HgaI	GACGC	3 cut(s)	242, 967, 1154
HhaI	GCGC	8 cut(s)	115, 472, 523, 574, 628, 679, 730, 1125
Hin1I	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
Hin1II	CATG	2 cut(s)	302, 1223
Hin6I	GCGC	8 cut(s)	113, 470, 521, 572, 626, 677, 728, 1123
HinP1I	GCGC	8 cut(s)	113, 470, 521, 572, 626, 677, 728, 1123
HinfI	GANTC	8 cut(s)	273, 476, 527, 683, 1115, 1157, 1199, 1262
HphI	GGTGA	4 cut(s)	85, 320, 828, 1067
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188III	TCNNGA	5 cut(s)	23, 299, 750, 926, 1033
Hpy8I	GTNNAC	1 cut(s)	37
Hpy99I	CGWCG	7 cut(s)	50, 158, 221, 258, 1170, 1215, 1296
HpyAV	CCTTC	5 cut(s)	126, 305, 753, 770, 855
HpyCH4IV	ACGT	1 cut(s)	1291
HpyF10VI	GCNNNNNNNGC	9 cut(s)	138, 221, 259, 343, 397, 847, 940, 1002, 1239
HpySE526I	ACGT	1 cut(s)	1291
Hsp92I	GRCGYC	6 cut(s)	470, 521, 626, 677, 728, 959
Hsp92II	CATG	2 cut(s)	302, 1223
HspAI	GCGC	8 cut(s)	113, 470, 521, 572, 626, 677, 728, 1123
KasI	GGCGCC	5 cut(s)	469, 520, 625, 676, 727
Kpn2I	TCCGGA	1 cut(s)	749
KspI	CCGCGG	1 cut(s)	363
LmnI	GCTCC	5 cut(s)	146, 364, 418, 928, 1060
Lsp1109I	GCAGC	1 cut(s)	255
LweI	GCATC	1 cut(s)	1216
MaeI	CTAG	3 cut(s)	333, 903, 1086
MaeII	ACGT	1 cut(s)	1291
MaeIII	GTNAC	2 cut(s)	443, 650
MbiI	CCGCTC	1 cut(s)	825
MboII	GAAGA	4 cut(s)	38, 300, 1062, 1289
MflI	RGATCY	7 cut(s)	329, 356, 383, 410, 437, 644, 746
MhlI	GDGCHC	1 cut(s)	204
Mly113I	GGCGCC	5 cut(s)	470, 521, 626, 677, 728
MlyI	GAGTC	2 cut(s)	1193, 1256
MmeI	TCCRAC	1 cut(s)	83
MroI	TCCGGA	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	362
MvaI	CCWGG	8 cut(s)	161, 339, 388, 674, 786, 852, 867, 1002
MvnI	CGCG	4 cut(s)	24, 113, 265, 362
MwoI	GCNNNNNNNGC	9 cut(s)	138, 221, 259, 343, 397, 847, 940, 1002, 1239
NarI	GGCGCC	5 cut(s)	470, 521, 626, 677, 728
NciI	CCSGG	2 cut(s)	270, 393
NlaIII	CATG	2 cut(s)	302, 1223
NmeAIII	GCCGAG	5 cut(s)	828, 867, 960, 969, 1065
NruI	TCGCGA	1 cut(s)	24
PagI	TCATGA	1 cut(s)	298
PceI	AGGCCT	5 cut(s)	337, 850, 865, 985, 1000
PcsI	WCGNNNNNNNCGW	7 cut(s)	36, 45, 51, 117, 162, 177, 262
PfeI	GAWTC	6 cut(s)	273, 476, 527, 683, 1115, 1157
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	791
PkrI	GCNGC	7 cut(s)	74, 104, 245, 264, 348, 933, 1241
PleI	GAGTC	2 cut(s)	1193, 1256
PluTI	GGCGCC	5 cut(s)	473, 524, 629, 680, 731
PpsI	GAGTC	2 cut(s)	1193, 1256
Psp6I	CCWGG	8 cut(s)	159, 337, 386, 672, 784, 850, 865, 1000
PspFI	CCCAGC	1 cut(s)	137
PspGI	CCWGG	8 cut(s)	159, 337, 386, 672, 784, 850, 865, 1000
PspPI	GGNCC	2 cut(s)	390, 782
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	7 cut(s)	329, 356, 383, 410, 437, 644, 746
PsyI	GACNNNGTC	1 cut(s)	32
RruI	TCGCGA	1 cut(s)	24
RsaI	GTAC	6 cut(s)	8, 53, 239, 566, 620, 1070
RsaNI	GTAC	6 cut(s)	7, 52, 238, 565, 619, 1069
SacII	CCGCGG	1 cut(s)	363
SatI	GCNGC	7 cut(s)	73, 103, 244, 263, 347, 932, 1240
Sau96I	GGNCC	2 cut(s)	390, 782
SchI	GAGTC	2 cut(s)	1193, 1256
SduI	GDGCHC	1 cut(s)	204
SfaNI	GCATC	1 cut(s)	1216
SfcI	CTRYAG	1 cut(s)	193
SfiI	GGCCNNNNNGGCC	2 cut(s)	343, 397
SfoI	GGCGCC	5 cut(s)	471, 522, 627, 678, 729
Sfr303I	CCGCGG	1 cut(s)	363
SgrBI	CCGCGG	1 cut(s)	363
SseBI	AGGCCT	5 cut(s)	337, 850, 865, 985, 1000
SspDI	GGCGCC	5 cut(s)	469, 520, 625, 676, 727
SspMI	CTAG	3 cut(s)	333, 903, 1086
StuI	AGGCCT	5 cut(s)	337, 850, 865, 985, 1000
TaiI	ACGT	1 cut(s)	1294
TaqI	TCGA	2 cut(s)	45, 723
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	6 cut(s)	75, 105, 265, 349, 934, 1242
TfiI	GAWTC	6 cut(s)	273, 476, 527, 683, 1115, 1157
TscAI	CASTG	2 cut(s)	1108, 1150
TseI	GCWGC	1 cut(s)	243
TspDTI	ATGAA	2 cut(s)	822, 1290
TspRI	CASTG	2 cut(s)	1108, 1150
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	791
XspI	CTAG	3 cut(s)	333, 903, 1086

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.