Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

21311375 .. 21311992

Gene Structure 618 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g17390.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGAGTAATGACTTGAATATTGAAGCAGCTTTAAGGGAGTCGAGATTGATCGAGAAGATCGAAATGGCCACGACCCAGTCTTGCGCCTACGCAGACGAGGCTCTCAACAACGAGTACAGCAGCTACGAGCGTGGCAAGCCCCGACCTGGATTCGGAGGTGGACGACCCGATCATGACGGCGGTGAAGGTGGAGGAGAGTATGGATCTAGTCCTGGTAGGCCGCAGTATGGATCTGTGAAGCCTCAATCGGAGTATGGATCCAGGCCCAGTCGGCCTCAGTATGGATCTGAGGAGCCTCAATCGGAGTTTGGATCGGGTTACGAGAAACCCGAGTTTGAAGTCGAGCCGGGTTATGGCCGGAAGCCAAGTTATGGAGAGGAGGAGAGCGGTGGCTCATCGCCGCCGAGGAGGCATGGGTCTGGTGGTTATGGAAGGGAGGAGACTGAGGAGAAGCCTAGTTATGGGAGGAGTAGCTATGAGACGCTGGAGGTGGAGATCAAAGAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.64

Weight (kDa)

4.88

Isoelectric Point (pI)

77.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	374
AccBSI	CCGCTC	1 cut(s)	390
AciI	CCGC	4 cut(s)	183, 224, 390, 404
AclWI	GGATC	6 cut(s)	214, 241, 255, 268, 295, 322
AcoI	YGGCCR	2 cut(s)	69, 358
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	7 cut(s)	149, 155, 230, 284, 356, 374, 464
AgsI	TTSAA	3 cut(s)	19, 26, 341
AjnI	CCWGG	3 cut(s)	148, 214, 263
AluBI	AGCT	3 cut(s)	32, 126, 477
AluI	AGCT	3 cut(s)	32, 126, 477
Alw26I	GTCTC	2 cut(s)	437, 476
AlwI	GGATC	6 cut(s)	214, 241, 255, 268, 295, 322
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	5 cut(s)	69, 221, 266, 275, 358
ApeKI	GCWGC	2 cut(s)	29, 123
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	267
AsuC2I	CCSGG	1 cut(s)	351
AsuHPI	GGTGA	1 cut(s)	197
AvaI	CYCGRG	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	41, 135
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	3 cut(s)	150, 216, 265
BcnI	CCSGG	1 cut(s)	351
BcoDI	GTCTC	2 cut(s)	437, 476
BfaI	CTAG	2 cut(s)	210, 459
BglI	GCCNNNNNGGC	2 cut(s)	274, 412
BisI	GCNGC	4 cut(s)	30, 124, 224, 404
BlsI	GCNGC	4 cut(s)	31, 125, 225, 405
Bme1390I	CCNGG	4 cut(s)	150, 216, 265, 351
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	267
BmiI	GGNNCC	2 cut(s)	262, 297
BmrFI	CCNGG	4 cut(s)	150, 216, 265, 351
BmrI	ACTGGG	2 cut(s)	73, 264
BmuI	ACTGGG	2 cut(s)	73, 264
BpmI	CTGGAG	1 cut(s)	509
BpuMI	CCSGG	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	407
Bsc4I	CCNNNNNNNGG	7 cut(s)	149, 155, 230, 284, 356, 374, 464
Bse1I	ACTGG	2 cut(s)	79, 270
BseBI	CCWGG	3 cut(s)	150, 216, 265
BseDI	CCNNGG	1 cut(s)	407
BseLI	CCNNNNNNNGG	7 cut(s)	149, 155, 230, 284, 356, 374, 464
BseMII	CTCAG	3 cut(s)	282, 293, 438
BseNI	ACTGG	2 cut(s)	79, 270
BseRI	GAGGAG	8 cut(s)	210, 308, 395, 398, 424, 455, 464, 484
BseXI	GCAGC	2 cut(s)	41, 135
BshFI	GGCC	5 cut(s)	71, 223, 268, 277, 360
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	2 cut(s)	350, 361
BslI	CCNNNNNNNGG	7 cut(s)	149, 155, 230, 284, 356, 374, 464
BsmAI	GTCTC	2 cut(s)	437, 476
BsmBI	CGTCTC	1 cut(s)	476
BsnI	GGCC	5 cut(s)	71, 223, 268, 277, 360
BsoBI	CYCGRG	1 cut(s)	332
Bsp143I	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
BspACI	CCGC	4 cut(s)	183, 224, 390, 404
BspANI	GGCC	5 cut(s)	71, 223, 268, 277, 360
BspCNI	CTCAG	3 cut(s)	283, 292, 439
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	262, 297
BspPI	GGATC	6 cut(s)	214, 241, 255, 268, 295, 322
BsrBI	CCGCTC	1 cut(s)	390
BsrI	ACTGG	2 cut(s)	79, 270
BssECI	CCNNGG	1 cut(s)	407
BssMI	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
Bst2UI	CCWGG	3 cut(s)	150, 216, 265
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	3 cut(s)	279, 291, 447
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	9 cut(s)	54, 63, 175, 209, 236, 263, 290, 317, 501
BstMAI	GTCTC	2 cut(s)	437, 476
BstMBI	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
BstMWI	GCNNNNNNNGC	4 cut(s)	101, 139, 274, 412
BstNI	CCWGG	3 cut(s)	150, 216, 265
BstSCI	CCNGG	4 cut(s)	148, 214, 263, 349
BstV1I	GCAGC	2 cut(s)	41, 135
BstX2I	RGATCY	4 cut(s)	206, 233, 260, 287
BstYI	RGATCY	4 cut(s)	206, 233, 260, 287
BsuRI	GGCC	5 cut(s)	71, 223, 268, 277, 360
BtgZI	GCGATG	1 cut(s)	384
Cac8I	GCNNGC	1 cut(s)	140
CciI	TCATGA	1 cut(s)	175
CfoI	GCGC	1 cut(s)	89
Cfr13I	GGNCC	1 cut(s)	267
CseI	GACGC	1 cut(s)	493
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	176, 416
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	279, 291, 447
DpnI	GATC	9 cut(s)	53, 62, 174, 208, 235, 262, 289, 316, 500
DpnII	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
EaeI	YGGCCR	2 cut(s)	69, 358
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	148, 214, 263
Esp3I	CGTCTC	1 cut(s)	476
FaeI	CATG	2 cut(s)	179, 419
FatI	CATG	2 cut(s)	175, 415
Fnu4HI	GCNGC	4 cut(s)	30, 124, 224, 404
Fsp4HI	GCNGC	4 cut(s)	30, 124, 224, 404
FspBI	CTAG	2 cut(s)	210, 459
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	4 cut(s)	30, 124, 224, 404
GsuI	CTGGAG	1 cut(s)	509
HaeIII	GGCC	5 cut(s)	71, 223, 268, 277, 360
HapII	CCGG	2 cut(s)	350, 361
HgaI	GACGC	1 cut(s)	493
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	179, 419
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HinfI	GANTC	2 cut(s)	41, 153
HpaII	CCGG	2 cut(s)	350, 361
HphI	GGTGA	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	164
Hpy188I	TCNGA	4 cut(s)	158, 253, 292, 307
Hpy188III	TCNNGA	3 cut(s)	45, 55, 176
Hpy8I	GTNNAC	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	182, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	101, 139, 274, 412
HpyF3I	CTNAG	3 cut(s)	279, 291, 447
Hsp92II	CATG	2 cut(s)	179, 419
HspAI	GCGC	1 cut(s)	87
Kzo9I	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	41, 135
MaeI	CTAG	2 cut(s)	210, 459
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	9 cut(s)	53, 62, 174, 208, 235, 262, 289, 316, 500
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
MboII	GAAGA	2 cut(s)	16, 70
MflI	RGATCY	4 cut(s)	206, 233, 260, 287
MlsI	TGGCCA	1 cut(s)	71
MluNI	TGGCCA	1 cut(s)	71
MlyI	GAGTC	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	71
MseI	TTAA	1 cut(s)	35
Msp20I	TGGCCA	1 cut(s)	71
MspI	CCGG	2 cut(s)	350, 361
MspR9I	CCNGG	4 cut(s)	150, 216, 265, 351
MvaI	CCWGG	3 cut(s)	150, 216, 265
MwoI	GCNNNNNNNGC	4 cut(s)	101, 139, 274, 412
NciI	CCSGG	1 cut(s)	351
NdeII	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
NlaIII	CATG	2 cut(s)	179, 419
NlaIV	GGNNCC	2 cut(s)	262, 297
NmeAIII	GCCGAG	1 cut(s)	432
PagI	TCATGA	1 cut(s)	175
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 330
PfeI	GAWTC	1 cut(s)	153
PflFI	GACNNNGTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	374
PkrI	GCNGC	4 cut(s)	31, 125, 225, 405
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
Psp6I	CCWGG	3 cut(s)	148, 214, 263
PspGI	CCWGG	3 cut(s)	148, 214, 263
PspN4I	GGNNCC	2 cut(s)	262, 297
PspPI	GGNCC	1 cut(s)	267
PsuI	RGATCY	4 cut(s)	206, 233, 260, 287
PsyI	GACNNNGTC	1 cut(s)	79
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	4 cut(s)	30, 124, 224, 404
Sau3AI	GATC	9 cut(s)	51, 60, 172, 206, 233, 260, 287, 314, 498
Sau96I	GGNCC	1 cut(s)	267
SchI	GAGTC	1 cut(s)	50
ScrFI	CCNGG	4 cut(s)	150, 216, 265, 351
SetI	ASST	7 cut(s)	34, 128, 151, 163, 193, 479, 495
SfiI	GGCCNNNNNGGCC	1 cut(s)	274
SsiI	CCGC	4 cut(s)	183, 224, 390, 404
SspI	AATATT	1 cut(s)	22
SspMI	CTAG	2 cut(s)	210, 459
StyD4I	CCNGG	4 cut(s)	148, 214, 263, 349
TaqI	TCGA	4 cut(s)	44, 54, 63, 345
TatI	WGTACW	1 cut(s)	117
TauI	GCSGC	2 cut(s)	226, 406
TfiI	GAWTC	1 cut(s)	153
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	2 cut(s)	29, 123
TspDTI	ATGAA	1 cut(s)	17
Tth111I	GACNNNGTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	374
XspI	CTAG	2 cut(s)	210, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.