Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

6275767 .. 6278363

Gene Structure 2597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1314 bp

ATGCCGTACTACTCGCACGCCGACGAAGTCCACGACTTCGACGAGTACGATCCGACCCCCTACGGCGGAGGATACGACCTGTTTCTCACCTACGGCCGCCCCCTCGAGCCTTCCGAGGAGACCTGCTACCCCAGCTCCTCCGATCAGGACGACTACGAACGCCCCGATCTCTCCTCCTACAGCGAGCCCTCCGCCTACGCCGACGAGGCCCTCAATAACGAGTACAGCAGCTACCAGCGTCCCAAGCCCCGACCCGGATTTGGAGGACGACCCGATCATGACGAGGCTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGGCCTCATTATGGATCCGAGGAGCCCGGATCGGGGTATGGATCCGGTTACGGGCGGAAACCCGAGGCCGATCAGCCCAGTTCCGAGTACGGGTCGGGTTACGGGCGGAAGCCGGAGTACAAAGCGCCTGAATCGGAGTATGGATCGGGTTACGGACGCAAACCCGAGTACGAGGCGCAGGAATCGGAGTATGGCAGGAAACCCGAGTACGAAGCGCCGGTCGGGGCGGGTTATGGCAGGAAACCCGAGTACGAAGCGCCGGTCGGGGTGGGTTATGGTCGGAAGCCAAGTTATGGTGAGGATGAGAGTGGTGGGTACGGCGATGAGCCGCCGAGGCGGAAGCCTAGCTATGGGAGTGAGGAGAGACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCGCCGAGGAGGCCTGGGTTTGGAAGGCCTGGTGGTTATGGGGGAGAGGAGAGTGAGGTGAGGCCTAGTTATGGGAGGAGTGAGTTTCAGGAGCCTGGTTTTGGTGATGAGCCGCCGAGGAAGCCCAGCTATGGTGGTAGGACTAGTTATGAGACCCCGGAAACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAAACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGAAGGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCGAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGTAGTGATGATGAGGATTCTCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCAGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

437

Amino Acids

49.38

Weight (kDa)

4.7

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccB7I	CCANNNNNTGG	1 cut(s)	617
AclWI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
AcoI	YGGCCR	2 cut(s)	94, 1219
AhlI	ACTAGT	1 cut(s)	866
AjnI	CCWGG	4 cut(s)	314, 736, 751, 817
Alw26I	GTCTC	8 cut(s)	113, 682, 869, 923, 932, 977, 1031, 1040
AlwI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
Ama87I	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
ApeKI	GCWGC	3 cut(s)	228, 287, 1270
ArsI	GACNNNNNNTTYG	4 cut(s)	528, 560, 570, 602
AspLEI	GCGC	4 cut(s)	451, 502, 541, 583
AspS9I	GGNCC	3 cut(s)	208, 318, 1065
AsuC2I	CCSGG	6 cut(s)	255, 351, 881, 935, 989, 1043
AsuHPI	GGTGA	5 cut(s)	79, 632, 793, 839, 1217
AvaI	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
BamHI	GGATCC	3 cut(s)	311, 338, 365
BanII	GRGCYC	2 cut(s)	189, 351
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvI	GCAGC	3 cut(s)	240, 274, 1282
BccI	CCATC	1 cut(s)	1296
BceAI	ACGGC	3 cut(s)	79, 109, 658
BciT130I	CCWGG	4 cut(s)	316, 738, 753, 819
BciVI	GTATCC	1 cut(s)	65
BcnI	CCSGG	6 cut(s)	255, 351, 881, 935, 989, 1043
BcoDI	GTCTC	8 cut(s)	113, 682, 869, 923, 932, 977, 1031, 1040
BcuI	ACTAGT	1 cut(s)	866
BfaI	CTAG	4 cut(s)	669, 789, 867, 1113
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	3 cut(s)	452, 542, 584
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	65
BglI	GCCNNNNNGGC	4 cut(s)	206, 325, 658, 733
BisI	GCNGC	7 cut(s)	97, 229, 288, 653, 836, 1222, 1271
BlsI	GCNGC	7 cut(s)	98, 230, 289, 654, 837, 1223, 1272
BmeT110I	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
BmgT120I	GGNCC	3 cut(s)	208, 318, 1065
BmiI	GGNNCC	5 cut(s)	313, 340, 348, 367, 816
BmrI	ACTGGG	3 cut(s)	315, 396, 1062
BmuI	ACTGGG	3 cut(s)	315, 396, 1062
BpuMI	CCSGG	6 cut(s)	255, 351, 881, 935, 989, 1043
BsaI	GGTCTC	6 cut(s)	113, 682, 869, 923, 977, 1031
BsaWI	WCCGGW	1 cut(s)	368
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 1079, 1109, 1114, 1144
Bse118I	RCCGGY	2 cut(s)	541, 583
Bse1I	ACTGG	3 cut(s)	321, 402, 1068
BseBI	CCWGG	4 cut(s)	316, 738, 753, 819
BseGI	GGATG	2 cut(s)	631, 724
BseMII	CTCAG	8 cut(s)	879, 933, 987, 1041, 1074, 1137, 1199, 1260
BseNI	ACTGG	3 cut(s)	321, 402, 1068
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	240, 274, 1282
BseYI	CCCAGC	5 cut(s)	131, 848, 905, 959, 1013
Bsh1285I	CGRYCG	3 cut(s)	97, 546, 588
BsiEI	CGRYCG	3 cut(s)	97, 546, 588
BsiHKCI	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
BslFI	GGGAC	1 cut(s)	225
BsmAI	GTCTC	8 cut(s)	113, 682, 869, 923, 932, 977, 1031, 1040
BsmFI	GGGAC	1 cut(s)	225
Bso31I	GGTCTC	6 cut(s)	113, 682, 869, 923, 977, 1031
BsoBI	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
Bsp1286I	GDGCHC	2 cut(s)	189, 351
BspCNI	CTCAG	8 cut(s)	880, 934, 988, 1042, 1075, 1138, 1198, 1259
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	5 cut(s)	313, 340, 348, 367, 816
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	9 cut(s)	44, 306, 319, 333, 346, 360, 361, 373, 475
BspTNI	GGTCTC	6 cut(s)	113, 682, 869, 923, 977, 1031
BsrFI	RCCGGY	2 cut(s)	541, 583
BsrI	ACTGG	3 cut(s)	321, 402, 1068
BssAI	RCCGGY	2 cut(s)	541, 583
Bst2UI	CCWGG	4 cut(s)	316, 738, 753, 819
Bst6I	CTCTTC	1 cut(s)	1203
BstC8I	GCNNGC	6 cut(s)	18, 185, 917, 971, 1025, 1103
BstDEI	CTNAG	8 cut(s)	888, 942, 996, 1050, 1083, 1146, 1185, 1246
BstF5I	GGATG	2 cut(s)	631, 724
BstH2I	RGCGCY	3 cut(s)	452, 542, 584
BstHHI	GCGC	4 cut(s)	451, 502, 541, 583
BstMAI	GTCTC	8 cut(s)	113, 682, 869, 923, 932, 977, 1031, 1040
BstMCI	CGRYCG	3 cut(s)	97, 546, 588
BstNI	CCWGG	4 cut(s)	316, 738, 753, 819
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	240, 274, 1282
BstX2I	RGATCY	3 cut(s)	311, 338, 365
BstYI	RGATCY	3 cut(s)	311, 338, 365
BstZI	CGGCCG	1 cut(s)	94
BsuI	GTATCC	1 cut(s)	65
BtgZI	GCGATG	2 cut(s)	660, 1274
BtsCI	GGATG	2 cut(s)	631, 724
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	6 cut(s)	18, 185, 917, 971, 1025, 1103
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	4 cut(s)	451, 502, 541, 583
Cfr10I	RCCGGY	2 cut(s)	541, 583
Cfr13I	GGNCC	3 cut(s)	208, 318, 1065
CseI	GACGC	4 cut(s)	227, 489, 1139, 1262
CviAII	CATG	1 cut(s)	278
DdeI	CTNAG	8 cut(s)	888, 942, 996, 1050, 1083, 1146, 1185, 1246
EaeI	YGGCCR	2 cut(s)	94, 1219
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	1203
EarI	CTCTTC	1 cut(s)	1203
EciI	GGCGGA	5 cut(s)	81, 181, 394, 445, 676
EclXI	CGGCCG	1 cut(s)	94
Eco147I	AGGCCT	4 cut(s)	328, 736, 751, 787
Eco24I	GRGCYC	2 cut(s)	189, 351
Eco31I	GGTCTC	6 cut(s)	113, 682, 869, 923, 977, 1031
Eco52I	CGGCCG	1 cut(s)	94
Eco88I	CYCGRG	6 cut(s)	104, 386, 488, 527, 569, 692
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	4 cut(s)	314, 736, 751, 817
EcoT38I	GRGCYC	2 cut(s)	189, 351
FaeI	CATG	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	7 cut(s)	97, 229, 288, 653, 836, 1222, 1271
FokI	GGATG	2 cut(s)	638, 731
FriOI	GRGCYC	2 cut(s)	189, 351
Fsp4HI	GCNGC	7 cut(s)	97, 229, 288, 653, 836, 1222, 1271
FspBI	CTAG	4 cut(s)	669, 789, 867, 1113
GlaI	GCGC	4 cut(s)	450, 501, 540, 582
GluI	GCNGC	7 cut(s)	97, 229, 288, 653, 836, 1222, 1271
GsaI	CCCAGC	5 cut(s)	135, 852, 909, 963, 1017
HaeII	RGCGCY	3 cut(s)	452, 542, 584
HgaI	GACGC	4 cut(s)	227, 489, 1139, 1262
HhaI	GCGC	4 cut(s)	451, 502, 541, 583
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	4 cut(s)	449, 500, 539, 581
HinP1I	GCGC	4 cut(s)	449, 500, 539, 581
HinfI	GANTC	5 cut(s)	455, 506, 1142, 1181, 1244
HphI	GGTGA	5 cut(s)	79, 632, 793, 839, 1217
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188III	TCNNGA	3 cut(s)	146, 278, 812
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	6 cut(s)	26, 44, 206, 1155, 1197, 1278
HpyAV	CCTTC	4 cut(s)	120, 287, 741, 1056
HpyF3I	CTNAG	8 cut(s)	888, 942, 996, 1050, 1083, 1146, 1185, 1246
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	4 cut(s)	449, 500, 539, 581
LmnI	GCTCC	4 cut(s)	140, 346, 814, 1087
Lsp1109I	GCAGC	3 cut(s)	240, 274, 1282
MaeI	CTAG	4 cut(s)	669, 789, 867, 1113
MaeIII	GTNAC	3 cut(s)	371, 422, 473
MboII	GAAGA	1 cut(s)	1220
MflI	RGATCY	3 cut(s)	311, 338, 365
MhlI	GDGCHC	2 cut(s)	189, 351
MlyI	GAGTC	1 cut(s)	1238
MmeI	TCCRAC	2 cut(s)	77, 584
MvaI	CCWGG	4 cut(s)	316, 738, 753, 819
NciI	CCSGG	6 cut(s)	255, 351, 881, 935, 989, 1043
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	5 cut(s)	313, 340, 348, 367, 816
NmeAIII	GCCGAG	3 cut(s)	681, 753, 864
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	4 cut(s)	328, 736, 751, 787
PcsI	WCGNNNNNNNCGW	6 cut(s)	30, 39, 45, 111, 162, 1159
PfeI	GAWTC	4 cut(s)	455, 506, 1142, 1181
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	98, 230, 289, 654, 837, 1223, 1272
PleI	GAGTC	1 cut(s)	1238
PpsI	GAGTC	1 cut(s)	1238
Psp6I	CCWGG	4 cut(s)	314, 736, 751, 817
PspFI	CCCAGC	5 cut(s)	131, 848, 905, 959, 1013
PspGI	CCWGG	4 cut(s)	314, 736, 751, 817
PspN4I	GGNNCC	5 cut(s)	313, 340, 348, 367, 816
PspPI	GGNCC	3 cut(s)	208, 318, 1065
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	3 cut(s)	311, 338, 365
PsyI	GACNNNGTC	1 cut(s)	26
SatI	GCNGC	7 cut(s)	97, 229, 288, 653, 836, 1222, 1271
Sau96I	GGNCC	3 cut(s)	208, 318, 1065
SchI	GAGTC	1 cut(s)	1238
SduI	GDGCHC	2 cut(s)	189, 351
SfcI	CTRYAG	1 cut(s)	178
SfiI	GGCCNNNNNGGCC	1 cut(s)	325
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	866
SseBI	AGGCCT	4 cut(s)	328, 736, 751, 787
SspMI	CTAG	4 cut(s)	669, 789, 867, 1113
StuI	AGGCCT	4 cut(s)	328, 736, 751, 787
TaqI	TCGA	2 cut(s)	39, 105
TatI	WGTACW	2 cut(s)	222, 441
TauI	GCSGC	4 cut(s)	99, 655, 838, 1224
TfiI	GAWTC	4 cut(s)	455, 506, 1142, 1181
TseI	GCWGC	3 cut(s)	228, 287, 1270
TspDTI	ATGAA	1 cut(s)	735
TspGWI	ACGGA	1 cut(s)	492
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	617
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	4 cut(s)	669, 789, 867, 1113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.