Rh6AG351500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0002017
Physical Location & Seq
Reverse (-)
55038137 .. 55038430
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG351500.1

Sequence Viewer

Length: 294 bp
ATGGTGTTCGGGGTGGAGGAGAGCTCGATTGGGATTCGGGGTGGTAAGTGTCATCAGGCTGAGCTCGTGTTCGATGCTGAAATCATAATCTCGAAGAGGACGCCTAATTGGAGGAGGCTGGGGCAGAAGACGGCTAGCTTGTGGAGGGAGGACCAGCCGCCGAGAGGCTCGGAGGAGGCGGCGGAGGCAAGATCGGAGATGACCGAGGTAGGCCCAGTTGCGAGGGTCGTCCTCCAATTCTTGCAATTCGAAGACTTTGATCAAGACTCTTTGGGAATTCATCGGCCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.95

Weight (kDa)

5.14

Isoelectric Point (pI)

66.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 158, 179, 182
AcsI RAATTY 1 cut(s) 276
AcyI GRCGYC 1 cut(s) 101
AfiI CCNNNNNNNGG 1 cut(s) 164
AluBI AGCT 3 cut(s) 24, 64, 138
AluI AGCT 3 cut(s) 24, 64, 138
Alw21I GWGCWC 2 cut(s) 26, 66
AoxI GGCC 2 cut(s) 211, 284
ApoI RAATTY 1 cut(s) 276
AspS9I GGNCC 2 cut(s) 151, 212
AsuII TTCGAA 1 cut(s) 249
AsuNHI GCTAGC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 151
BanII GRGCYC 2 cut(s) 26, 66
BauI CACGAG 1 cut(s) 65
BbsI GAAGAC 2 cut(s) 134, 258
Bbv12I GWGCWC 2 cut(s) 26, 66
BceAI ACGGC 1 cut(s) 147
BclI TGATCA 1 cut(s) 259
BfaI CTAG 1 cut(s) 135
BisI GCNGC 2 cut(s) 158, 180
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 2 cut(s) 159, 181
Bme18I GGWCC 1 cut(s) 151
BmgT120I GGNCC 2 cut(s) 151, 212
BmrI ACTGGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 64
BmtI GCTAGC 1 cut(s) 138
BmuI ACTGGG 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 134, 258
BplI GAGNNNNNCTC 2 cut(s) 8, 40
Bpu1102I GCTNAGC 1 cut(s) 60
Bpu14I TTCGAA 1 cut(s) 249
BsaHI GRCGYC 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 204
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 51
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 3 cut(s) 32, 127, 188
BseYI CCCAGC 1 cut(s) 118
BshFI GGCC 2 cut(s) 213, 286
BsiHKAI GWGCWC 2 cut(s) 26, 66
BslI CCNNNNNNNGG 1 cut(s) 164
BsnI GGCC 2 cut(s) 213, 286
Bsp119I TTCGAA 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 26, 66
Bsp143I GATC 2 cut(s) 191, 259
Bsp1720I GCTNAGC 1 cut(s) 60
BspACI CCGC 3 cut(s) 158, 179, 182
BspANI GGCC 2 cut(s) 213, 286
BspCNI CTCAG 1 cut(s) 52
BspOI GCTAGC 1 cut(s) 138
BspT104I TTCGAA 1 cut(s) 249
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 191, 259
BssNI GRCGYC 1 cut(s) 101
BssSI CACGAG 1 cut(s) 65
Bst2BI CACGAG 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 89
BstACI GRCGYC 1 cut(s) 101
BstBI TTCGAA 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 136
BstDEI CTNAG 1 cut(s) 60
BstKTI GATC 2 cut(s) 194, 262
BstMBI GATC 2 cut(s) 191, 259
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstV2I GAAGAC 2 cut(s) 134, 258
BsuRI GGCC 2 cut(s) 213, 286
Cac8I GCNNGC 1 cut(s) 136
Cfr13I GGNCC 2 cut(s) 151, 212
CseI GACGC 1 cut(s) 109
DdeI CTNAG 1 cut(s) 60
DpnI GATC 2 cut(s) 193, 261
DpnII GATC 2 cut(s) 191, 259
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 24, 64
Eco24I GRGCYC 2 cut(s) 26, 66
Eco47I GGWCC 1 cut(s) 151
Eco53kI GAGCTC 2 cut(s) 24, 64
EcoICRI GAGCTC 2 cut(s) 24, 64
EcoRI GAATTC 1 cut(s) 276
EcoT38I GRGCYC 2 cut(s) 26, 66
FaiI YATR 1 cut(s) 86
FbaI TGATCA 1 cut(s) 259
Fnu4HI GCNGC 2 cut(s) 158, 180
FriOI GRGCYC 2 cut(s) 26, 66
Fsp4HI GCNGC 2 cut(s) 158, 180
FspBI CTAG 1 cut(s) 135
GluI GCNGC 2 cut(s) 158, 180
GsaI CCCAGC 1 cut(s) 122
HaeIII GGCC 2 cut(s) 213, 286
HgaI GACGC 1 cut(s) 109
Hin1I GRCGYC 1 cut(s) 101
HinfI GANTC 2 cut(s) 34, 266
Hpy188I TCNGA 3 cut(s) 172, 196, 293
Hpy188III TCNNGA 2 cut(s) 91, 263
HpyCH4V TGCA 1 cut(s) 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
HpyF3I CTNAG 1 cut(s) 60
Hsp92I GRCGYC 1 cut(s) 101
Ksp22I TGATCA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 191, 259
LpnPI CCDG 4 cut(s) 41, 104, 167, 228
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 135
MalI GATC 2 cut(s) 193, 261
MboI GATC 2 cut(s) 191, 259
MboII GAAGA 3 cut(s) 106, 139, 263
MhlI GDGCHC 2 cut(s) 26, 66
MluCI AATT 4 cut(s) 106, 236, 245, 276
MlyI GAGTC 1 cut(s) 260
MwoI GCNNNNNNNGC 1 cut(s) 185
NdeII GATC 2 cut(s) 191, 259
NheI GCTAGC 1 cut(s) 134
NmeAIII GCCGAG 1 cut(s) 186
NspV TTCGAA 1 cut(s) 249
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 2 cut(s) 159, 181
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
Psp124BI GAGCTC 2 cut(s) 26, 66
PspFI CCCAGC 1 cut(s) 118
PspPI GGNCC 2 cut(s) 151, 212
SacI GAGCTC 2 cut(s) 26, 66
SatI GCNGC 2 cut(s) 158, 180
Sau3AI GATC 2 cut(s) 191, 259
Sau96I GGNCC 2 cut(s) 151, 212
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 26, 66
SetI ASST 4 cut(s) 26, 66, 140, 210
SfaNI GCATC 1 cut(s) 64
SfuI TTCGAA 1 cut(s) 249
SinI GGWCC 1 cut(s) 151
Sse9I AATT 4 cut(s) 106, 236, 245, 276
SsiI CCGC 3 cut(s) 158, 179, 182
SspMI CTAG 1 cut(s) 135
SstI GAGCTC 2 cut(s) 26, 66
TaqI TCGA 4 cut(s) 26, 72, 92, 249
TaqII GACCGA 1 cut(s) 218
TasI AATT 4 cut(s) 106, 236, 245, 276
TauI GCSGC 2 cut(s) 160, 182
TfiI GAWTC 1 cut(s) 34
TspDTI ATGAA 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 151
XapI RAATTY 1 cut(s) 276
XspI CTAG 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.