Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

4139906 .. 4141190

Gene Structure 1285 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1052900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCGCATTACCGCTCGTACTACTCGGAGAAGGATACCGACGACGACACCGACATATTTGACGAGTACGACCCGACGCCGTACGAGGGGGGATACGACATGGGATTGACGTATGGCCGGCCTTTACAACCTTCGGAGGAGACGTGCTACCGTCACTCGTCGGCCTCCGATGATTACGATGAGCCGGAGTTCCCGTCGTACAATGAGCCGTCTGCGTACGACGACGAGGCTTTGGAAGAGGAGTACAGCAGCTACGCCCGACCATCGCACGAGGGCGACCAGTTCCGCAAACAGAGAGAGGGGAGGAAAAGCGAGTCTTTTGACGACGAGGAGCGTACTCCAGCAGGCGAAGGTGGCTATGGTCGCAAAAAATTGTCTTCGTCGTGGTGGCCGGGATGTTGTACTAGCGACCAAGCAATTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

142

Amino Acids

16.29

Weight (kDa)

4.24

Isoelectric Point (pI)

64.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	15
AciI	CCGC	2 cut(s)	13, 286
AcoI	YGGCCR	2 cut(s)	115, 389
AcyI	GRCGYC	1 cut(s)	77
AfaI	GTAC	8 cut(s)	20, 68, 83, 200, 218, 245, 337, 403
AfiI	CCNNNNNNNGG	1 cut(s)	86
AjiI	CACGTC	1 cut(s)	144
AluBI	AGCT	1 cut(s)	252
AluI	AGCT	1 cut(s)	252
Alw26I	GTCTC	1 cut(s)	134
AoxI	GGCC	4 cut(s)	115, 119, 162, 389
ApeKI	GCWGC	1 cut(s)	249
AspLEI	GCGC	1 cut(s)	7
AsuC2I	CCSGG	1 cut(s)	393
BauI	CACGAG	1 cut(s)	269
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	2 cut(s)	64, 193
BciVI	GTATCC	2 cut(s)	28, 86
BcnI	CCSGG	1 cut(s)	393
BcoDI	GTCTC	1 cut(s)	134
BfaI	CTAG	1 cut(s)	405
BfuI	GTATCC	2 cut(s)	28, 86
BisI	GCNGC	1 cut(s)	250
BlsI	GCNGC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	393
BmgBI	CACGTC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	77
BsaXI	ACNNNNNCTCC	4 cut(s)	128, 158, 179, 209
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse118I	RCCGGY	1 cut(s)	117
Bse1I	ACTGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	401
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	3 cut(s)	152, 254, 344
BseXI	GCAGC	1 cut(s)	261
BshFI	GGCC	4 cut(s)	117, 121, 164, 391
BsiSI	CCGG	3 cut(s)	118, 185, 392
BsiWI	CGTACG	2 cut(s)	81, 216
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	134
BsmBI	CGTCTC	1 cut(s)	134
BsnI	GGCC	4 cut(s)	117, 121, 164, 391
BspACI	CCGC	2 cut(s)	13, 286
BspANI	GGCC	4 cut(s)	117, 121, 164, 391
BsrBI	CCGCTC	1 cut(s)	15
BsrFI	RCCGGY	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	280
BssAI	RCCGGY	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	269
Bst4CI	ACNGT	1 cut(s)	152
Bst6I	CTCTTC	1 cut(s)	231
BstACI	GRCGYC	1 cut(s)	77
BstC8I	GCNNGC	2 cut(s)	119, 346
BstF5I	GGATG	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	134
BstMWI	GCNNNNNNNGC	2 cut(s)	354, 363
BstSCI	CCNGG	1 cut(s)	391
BstV1I	GCAGC	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	369
BsuI	GTATCC	2 cut(s)	28, 86
BsuRI	GGCC	4 cut(s)	117, 121, 164, 391
BtgZI	GCGATG	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	144
BtsCI	GGATG	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	119, 346
CfoI	GCGC	1 cut(s)	7
Cfr10I	RCCGGY	1 cut(s)	117
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	8 cut(s)	19, 67, 82, 199, 217, 244, 336, 402
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	9 cut(s)	117, 121, 164, 184, 208, 230, 252, 357, 391
CviKI_1	RGCY	9 cut(s)	117, 121, 164, 184, 208, 230, 252, 357, 391
CviQI	GTAC	8 cut(s)	19, 67, 82, 199, 217, 244, 336, 402
EaeI	YGGCCR	2 cut(s)	115, 389
Eam1104I	CTCTTC	1 cut(s)	231
EarI	CTCTTC	1 cut(s)	231
Esp3I	CGTCTC	1 cut(s)	134
FaeI	CATG	1 cut(s)	103
FaiI	YATR	4 cut(s)	56, 101, 114, 360
FalI	AAGNNNNNCTT	2 cut(s)	301, 333
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	250
FokI	GGATG	1 cut(s)	408
FseI	GGCCGGCC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	250
FspBI	CTAG	1 cut(s)	405
GlaI	GCGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	250
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	4 cut(s)	117, 121, 164, 391
HapII	CCGG	3 cut(s)	118, 185, 392
HgaI	GACGC	1 cut(s)	85
HhaI	GCGC	1 cut(s)	7
Hin1I	GRCGYC	1 cut(s)	77
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	5
HinP1I	GCGC	1 cut(s)	5
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	3 cut(s)	118, 185, 392
Hpy188I	TCNGA	3 cut(s)	28, 136, 169
Hpy99I	CGWCG	9 cut(s)	44, 47, 79, 163, 199, 224, 227, 329, 385
HpyAV	CCTTC	3 cut(s)	25, 141, 344
HpyCH4III	ACNGT	1 cut(s)	152
HpyCH4IV	ACGT	2 cut(s)	110, 143
HpyF10VI	GCNNNNNNNGC	2 cut(s)	354, 363
HpySE526I	ACGT	2 cut(s)	110, 143
Hsp92I	GRCGYC	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	5
KroI	GCCGGC	1 cut(s)	117
KroNI	GCCGGC	1 cut(s)	119
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	6 cut(s)	131, 198, 293, 330, 354, 405
Lsp1109I	GCAGC	1 cut(s)	261
MaeI	CTAG	1 cut(s)	405
MaeII	ACGT	2 cut(s)	110, 143
MaeIII	GTNAC	1 cut(s)	152
MbiI	CCGCTC	1 cut(s)	15
MboII	GAAGA	2 cut(s)	248, 369
MluCI	AATT	2 cut(s)	371, 417
MlyI	GAGTC	1 cut(s)	323
MnlI	CCTC	9 cut(s)	79, 130, 175, 220, 232, 265, 292, 297, 322
MroNI	GCCGGC	1 cut(s)	117
MspI	CCGG	3 cut(s)	118, 185, 392
MspR9I	CCNGG	1 cut(s)	393
MwoI	GCNNNNNNNGC	2 cut(s)	354, 363
NaeI	GCCGGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	393
NgoMIV	GCCGGC	1 cut(s)	117
NlaIII	CATG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	152
PcsI	WCGNNNNNNNCGW	2 cut(s)	48, 140
PdiI	GCCGGC	1 cut(s)	119
Pfl23II	CGTACG	2 cut(s)	81, 216
PkrI	GCNGC	1 cut(s)	251
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PspLI	CGTACG	2 cut(s)	81, 216
RigI	GGCCGGCC	1 cut(s)	121
RsaI	GTAC	8 cut(s)	20, 68, 83, 200, 218, 245, 337, 403
RsaNI	GTAC	8 cut(s)	19, 67, 82, 199, 217, 244, 336, 402
SatI	GCNGC	1 cut(s)	250
SchI	GAGTC	1 cut(s)	323
ScrFI	CCNGG	1 cut(s)	393
SetI	ASST	5 cut(s)	113, 133, 146, 254, 355
Sse9I	AATT	2 cut(s)	371, 417
SsiI	CCGC	2 cut(s)	13, 286
SspMI	CTAG	1 cut(s)	405
StyD4I	CCNGG	1 cut(s)	391
TaaI	ACNGT	1 cut(s)	152
TaiI	ACGT	2 cut(s)	113, 146
TasI	AATT	2 cut(s)	371, 417
TatI	WGTACW	2 cut(s)	243, 401
TseFI	GTSAC	1 cut(s)	152
TseI	GCWGC	1 cut(s)	249
Tsp45I	GTSAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.