RLG00000021708

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002017
Physical Location & Seq
Forward (+)
77412254 .. 77414390
2137 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021708

Sequence Viewer

Length: 1365 bp
ATGCCGTACTACTCGCACGCCGACGAAGTCCACGACTTCGACGAGTACGATCCGACCCCCTACGGCGGCGGATACGACCTGTTTCTCACCTACGGCCGCCCCCTCGAGCCTTCCGAGGAGACCTGCTACCCCAGCTCCTCCGATCAGGACGACTACGAACGCCCCGATCTCTCCTCCTACAGCGAGCCCTCCGCCTACGCCGACGAGGCCCTCAATAACGAGTACAGCAGCTACCAGCGTCACAAGCCCCAACCCGGATTTGGTGGACGACCCGATCATGACGAGGCTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGGCCTCAGTATGGATCCGAGGAGCCCGGATCGGAGTATGGATCCGGTTACGGGCGGAAACCCGACTCCGATCAGCCCAGTTCCGAGTACGGGTCGGGTTACGGTCGGAAGCCGGAGTACAAAGCGCCTGAATCGGAGTATGGATCGGGTTACGGGCGCAAACCAGAGTACGAGGCGCCGGAATCGGATTATGGTCGGAAACCCGAGTACGAAGCGCCGGTCGGGGCGGGTTATGGCAGGAAACCCGATTACGAAGCGCCGGTCGGGTCGGGTTATGGCCGGAAGCCAAGTTATGGTGAGGATGAGAGTGGTGGATACGGCGATGAGCCGCCGAGGCGGAAGCCGAGCTATGGTGAGGAGAAACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCGCCGAGGAGACCTGGGTTTGGAAGGCCTGGTGGTTTTGGTGGGGAGGAGAGTGAAGAGAGGCCCAGTTATGGGAGGTCTGAGTTTCAGGAGCCTGGTTATGGTGATGAGCCGCCGAGGAGGCCCAGCTATGGTGGTAGGACTAGTTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCCATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCTATGGCAAGCCAGGCTATGAGACCCCGGAGACTGAGGAGTGTGGGAAGCCCAGCTATGGTAGGCCAGGCTATGAGACCCCGGAGGCTGAGCAGTATGGGAAGCCCAGCTATGGTAGGCCTGGCTATGGGACCCCGGAGACTGAGGAGTATGGAAGGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCTAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGCAGTGATGATGAGGATTCCCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCAGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

455

Amino Acids

51.1

Weight (kDa)

4.68

Isoelectric Point (pI)

61.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 617
AclWI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
AcoI YGGCCR 3 cut(s) 94, 601, 1270
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 8 cut(s) 8, 47, 224, 413, 443, 494, 533, 1148
AhlI ACTAGT 1 cut(s) 863
AjnI CCWGG 7 cut(s) 314, 733, 748, 814, 970, 1024, 1078
AlwI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
Ama87I CYCGRG 3 cut(s) 104, 527, 689
ApeKI GCWGC 3 cut(s) 228, 287, 1321
ArsI GACNNNNNNTTYG 4 cut(s) 528, 560, 570, 602
AspLEI GCGC 5 cut(s) 451, 483, 502, 541, 583
AspS9I GGNCC 6 cut(s) 208, 318, 783, 843, 1089, 1116
AsuC2I CCSGG 7 cut(s) 255, 351, 878, 932, 986, 1040, 1094
AsuHPI GGTGA 5 cut(s) 79, 632, 689, 836, 1268
AvaI CYCGRG 3 cut(s) 104, 527, 689
AvaII GGWCC 1 cut(s) 1089
BamHI GGATCC 3 cut(s) 311, 338, 365
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 2 cut(s) 189, 351
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
BbvI GCAGC 3 cut(s) 240, 274, 1333
BccI CCATC 1 cut(s) 1347
BceAI ACGGC 3 cut(s) 79, 109, 658
BciT130I CCWGG 7 cut(s) 316, 735, 750, 816, 972, 1026, 1080
BciVI GTATCC 2 cut(s) 65, 632
BcnI CCSGG 7 cut(s) 255, 351, 878, 932, 986, 1040, 1094
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 2 cut(s) 864, 1164
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 4 cut(s) 452, 503, 542, 584
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 2 cut(s) 65, 632
BglI GCCNNNNNGGC 4 cut(s) 206, 325, 658, 841
BisI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1273, 1322
BlpI GCTNAGC 1 cut(s) 1047
BlsI GCNGC 8 cut(s) 68, 98, 230, 289, 654, 834, 1274, 1323
Bme18I GGWCC 1 cut(s) 1089
BmeT110I CYCGRG 3 cut(s) 104, 527, 689
BmgT120I GGNCC 6 cut(s) 208, 318, 783, 843, 1089, 1116
BmiI GGNNCC 8 cut(s) 313, 340, 348, 367, 501, 813, 1090, 1091
BmrI ACTGGG 4 cut(s) 315, 396, 780, 1113
BmuI ACTGGG 4 cut(s) 315, 396, 780, 1113
Bpu10I CCTNAGC 1 cut(s) 1158
Bpu1102I GCTNAGC 1 cut(s) 1047
BpuMI CCSGG 7 cut(s) 255, 351, 878, 932, 986, 1040, 1094
BsaHI GRCGYC 1 cut(s) 500
BsaI GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 1130, 1160, 1165, 1195
Bse118I RCCGGY 2 cut(s) 541, 583
Bse1I ACTGG 4 cut(s) 321, 402, 786, 1119
BseBI CCWGG 7 cut(s) 316, 735, 750, 816, 972, 1026, 1080
BseGI GGATG 2 cut(s) 631, 721
BseNI ACTGG 4 cut(s) 321, 402, 786, 1119
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 240, 274, 1333
BseYI CCCAGC 7 cut(s) 131, 845, 902, 956, 1010, 1064, 1236
Bsh1285I CGRYCG 4 cut(s) 97, 430, 546, 588
BshNI GGYRCC 1 cut(s) 499
BsiEI CGRYCG 4 cut(s) 97, 430, 546, 588
BsiHKCI CYCGRG 3 cut(s) 104, 527, 689
BslFI GGGAC 1 cut(s) 1102
BsmFI GGGAC 1 cut(s) 1102
Bso31I GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsoBI CYCGRG 3 cut(s) 104, 527, 689
Bsp1286I GDGCHC 2 cut(s) 189, 351
Bsp1720I GCTNAGC 1 cut(s) 1047
Bsp19I CCATGG 1 cut(s) 907
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 8 cut(s) 313, 340, 348, 367, 501, 813, 1090, 1091
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsrFI RCCGGY 2 cut(s) 541, 583
BsrI ACTGG 4 cut(s) 321, 402, 786, 1119
BssAI RCCGGY 2 cut(s) 541, 583
BssNI GRCGYC 1 cut(s) 500
BssT1I CCWWGG 1 cut(s) 907
Bst2UI CCWGG 7 cut(s) 316, 735, 750, 816, 972, 1026, 1080
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 771, 1254
BstACI GRCGYC 1 cut(s) 500
BstC8I GCNNGC 5 cut(s) 18, 185, 914, 968, 1154
BstDSI CCRYGG 1 cut(s) 907
BstF5I GGATG 2 cut(s) 631, 721
BstH2I RGCGCY 4 cut(s) 452, 503, 542, 584
BstHHI GCGC 5 cut(s) 451, 483, 502, 541, 583
BstMCI CGRYCG 4 cut(s) 97, 430, 546, 588
BstMWI GCNNNNNNNGC 9 cut(s) 132, 206, 244, 325, 658, 841, 918, 972, 1272
BstNI CCWGG 7 cut(s) 316, 735, 750, 816, 972, 1026, 1080
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 240, 274, 1333
BstX2I RGATCY 3 cut(s) 311, 338, 365
BstYI RGATCY 3 cut(s) 311, 338, 365
BstZI CGGCCG 1 cut(s) 94
BsuI GTATCC 2 cut(s) 65, 632
BtgI CCRYGG 1 cut(s) 907
BtgZI GCGATG 2 cut(s) 660, 1325
BtsCI GGATG 2 cut(s) 631, 721
BtsI GCAGTG 1 cut(s) 1225
BtsIMutI CAGTG 1 cut(s) 1225
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 5 cut(s) 18, 185, 914, 968, 1154
CciI TCATGA 1 cut(s) 277
CfoI GCGC 5 cut(s) 451, 483, 502, 541, 583
Cfr10I RCCGGY 2 cut(s) 541, 583
Cfr13I GGNCC 6 cut(s) 208, 318, 783, 843, 1089, 1116
CseI GACGC 3 cut(s) 227, 1190, 1313
Csp6I GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1147
CviAII CATG 2 cut(s) 278, 908
CviQI GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1147
DinI GGCGCC 1 cut(s) 501
EaeI YGGCCR 3 cut(s) 94, 601, 1270
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 771, 1254
EarI CTCTTC 2 cut(s) 771, 1254
EciI GGCGGA 4 cut(s) 84, 181, 394, 676
EclXI CGGCCG 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 907
Eco147I AGGCCT 3 cut(s) 328, 748, 1078
Eco24I GRGCYC 2 cut(s) 189, 351
Eco31I GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
Eco47I GGWCC 1 cut(s) 1089
Eco52I CGGCCG 1 cut(s) 94
Eco88I CYCGRG 3 cut(s) 104, 527, 689
EcoO109I RGGNCCY 2 cut(s) 208, 1089
EcoRII CCWGG 7 cut(s) 314, 733, 748, 814, 970, 1024, 1078
EcoT14I CCWWGG 1 cut(s) 907
EcoT38I GRGCYC 2 cut(s) 189, 351
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 907
FaeI CATG 2 cut(s) 281, 911
FaqI GGGAC 1 cut(s) 1102
FatI CATG 2 cut(s) 277, 907
FauI CCCGC 1 cut(s) 544
Fnu4HI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1273, 1322
FokI GGATG 2 cut(s) 638, 728
FriOI GRGCYC 2 cut(s) 189, 351
Fsp4HI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1273, 1322
FspBI CTAG 2 cut(s) 864, 1164
GlaI GCGC 5 cut(s) 450, 482, 501, 540, 582
GluI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1273, 1322
GsaI CCCAGC 7 cut(s) 135, 849, 906, 960, 1014, 1068, 1240
HaeII RGCGCY 4 cut(s) 452, 503, 542, 584
HgaI GACGC 3 cut(s) 227, 1190, 1313
HhaI GCGC 5 cut(s) 451, 483, 502, 541, 583
Hin1I GRCGYC 1 cut(s) 500
Hin1II CATG 2 cut(s) 281, 911
Hin6I GCGC 5 cut(s) 449, 481, 500, 539, 581
HinP1I GCGC 5 cut(s) 449, 481, 500, 539, 581
HinfI GANTC 6 cut(s) 389, 455, 506, 1193, 1232, 1295
HphI GGTGA 5 cut(s) 79, 632, 689, 836, 1268
Hpy166II GTNNAC 2 cut(s) 31, 266
Hpy188III TCNNGA 3 cut(s) 146, 278, 809
Hpy8I GTNNAC 2 cut(s) 31, 266
Hpy99I CGWCG 6 cut(s) 26, 44, 206, 1206, 1248, 1329
HpyAV CCTTC 4 cut(s) 120, 287, 738, 1107
HpyCH4III ACNGT 1 cut(s) 428
HpyF10VI GCNNNNNNNGC 9 cut(s) 132, 206, 244, 325, 658, 841, 918, 972, 1272
Hsp92I GRCGYC 1 cut(s) 500
Hsp92II CATG 2 cut(s) 281, 911
HspAI GCGC 5 cut(s) 449, 481, 500, 539, 581
KasI GGCGCC 1 cut(s) 499
KflI GGGWCCC 1 cut(s) 1089
LmnI GCTCC 4 cut(s) 140, 346, 811, 1138
Lsp1109I GCAGC 3 cut(s) 240, 274, 1333
MaeI CTAG 2 cut(s) 864, 1164
MaeIII GTNAC 4 cut(s) 239, 371, 422, 473
MboII GAAGA 2 cut(s) 788, 1271
MflI RGATCY 3 cut(s) 311, 338, 365
MhlI GDGCHC 2 cut(s) 189, 351
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 2 cut(s) 383, 1289
MmeI TCCRAC 3 cut(s) 77, 410, 500
MvaI CCWGG 7 cut(s) 316, 735, 750, 816, 972, 1026, 1080
MwoI GCNNNNNNNGC 9 cut(s) 132, 206, 244, 325, 658, 841, 918, 972, 1272
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 7 cut(s) 255, 351, 878, 932, 986, 1040, 1094
NcoI CCATGG 1 cut(s) 907
NlaIII CATG 2 cut(s) 281, 911
NlaIV GGNNCC 8 cut(s) 313, 340, 348, 367, 501, 813, 1090, 1091
NmeAIII GCCGAG 4 cut(s) 681, 693, 750, 861
NmuCI GTSAC 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 104
PagI TCATGA 1 cut(s) 277
PceI AGGCCT 3 cut(s) 328, 748, 1078
PcsI WCGNNNNNNNCGW 6 cut(s) 30, 39, 45, 111, 162, 1210
PfeI GAWTC 4 cut(s) 455, 506, 1193, 1232
PflFI GACNNNGTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 8 cut(s) 68, 98, 230, 289, 654, 834, 1274, 1323
PleI GAGTC 2 cut(s) 383, 1289
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 2 cut(s) 383, 1289
PpuMI RGGWCCY 1 cut(s) 1089
Psp5II RGGWCCY 1 cut(s) 1089
Psp6I CCWGG 7 cut(s) 314, 733, 748, 814, 970, 1024, 1078
PspFI CCCAGC 7 cut(s) 131, 845, 902, 956, 1010, 1064, 1236
PspGI CCWGG 7 cut(s) 314, 733, 748, 814, 970, 1024, 1078
PspN4I GGNNCC 8 cut(s) 313, 340, 348, 367, 501, 813, 1090, 1091
PspPI GGNCC 6 cut(s) 208, 318, 783, 843, 1089, 1116
PspPPI RGGWCCY 1 cut(s) 1089
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 3 cut(s) 311, 338, 365
PsyI GACNNNGTC 1 cut(s) 26
RsaI GTAC 8 cut(s) 8, 47, 224, 413, 443, 494, 533, 1148
RsaNI GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1147
SatI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1273, 1322
Sau96I GGNCC 6 cut(s) 208, 318, 783, 843, 1089, 1116
SchI GAGTC 2 cut(s) 383, 1289
SduI GDGCHC 2 cut(s) 189, 351
SfcI CTRYAG 1 cut(s) 178
SfiI GGCCNNNNNGGCC 1 cut(s) 325
SfoI GGCGCC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 1089
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 863
SseBI AGGCCT 3 cut(s) 328, 748, 1078
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 2 cut(s) 864, 1164
StuI AGGCCT 3 cut(s) 328, 748, 1078
StyI CCWWGG 1 cut(s) 907
TaaI ACNGT 1 cut(s) 428
TaqI TCGA 2 cut(s) 39, 105
TatI WGTACW 2 cut(s) 222, 441
TauI GCSGC 5 cut(s) 69, 99, 655, 835, 1275
TfiI GAWTC 4 cut(s) 455, 506, 1193, 1232
TscAI CASTG 1 cut(s) 1225
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 3 cut(s) 228, 287, 1321
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 1 cut(s) 732
TspRI CASTG 1 cut(s) 1225
Tth111I GACNNNGTC 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 617
VpaK11BI GGWCC 1 cut(s) 1089
XcmI CCANNNNNNNNNTGG 1 cut(s) 257
XhoI CTCGAG 1 cut(s) 104
XspI CTAG 2 cut(s) 864, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.