Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

82685877 .. 82687917

Gene Structure 2041 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG596500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGCCGTACTACTCGCACGATGACGAAGTCCACGACTTCGACGAGTACGATCCGACCCCCTACGGCGGCGGATACGACCTGTTTCTCACCTACGGCCGCCCCCTCGAGCCTTCCGAGGAGACCTGCTACCCCAGCTCCTCCGATCAGGACGACTACGAACGACCCGATCTCTCCTCCTACAGCGAGCCCTCCGCCTACGCCGATGAGGCCCTCAATAACGAGTACAGCAGCTACCAGCGTCCCAAGCCCCGACCCGGATTTGGTGGACGACCGGATCATGACGAGGCTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGGCCTCAGTATGGATCCGAGGAGCCCGGATCGGAGTATGGATCTGGTTACGGGCGGAAACCCGAGGCCGATCAGCCCAGTTCCGAGTACGGGTCGGGTTACGGTCGGAAGCCGGAGTACAAAGCACCTGAATCGGAGTATGGATCGGGTTACGGGCGCAAACCTGAGTACGAGGCGCCGGAATCGGAGTATGGTCGGAAACCCGAGTACGAAGCGCCGGTCGGGGCGGGTTATGGCAGGAAACCCGATTACGAAGCGCCGGTCGGGTCGGGTTATGGCCGGAAGCCAAGTTATGGTGAGGATGAGAGTGGTGGATACGGCGATGAGCCGCCGAGGCGGAAGCCGAGCTATGGTGAGGAGAAACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCGCCGAGGAGACCTGGGTTTGGAAGGCCTGGTGGTTATGGTGGGGAGGAGAGTGAAGAGAGGCCCAGTTATGGGAGGACTGAGTTTCAGGAGCCGGGTTATGGTGATGAGCCGCCGAGGAAGCCCAGCTATGGTGGTAGGACTAGTTATGAGACCCCGGAAACTGACGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTACGAGACCCCGGAAACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCGAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGTAGTGATGATGAGGATTCTCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCAGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

436

Amino Acids

49.33

Weight (kDa)

4.63

Isoelectric Point (pI)

58.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	499
AccB7I	CCANNNNNTGG	1 cut(s)	617
AclWI	GGATC	9 cut(s)	44, 282, 306, 319, 333, 346, 361, 373, 475
AcoI	YGGCCR	3 cut(s)	94, 601, 1216
AcyI	GRCGYC	1 cut(s)	500
AfaI	GTAC	8 cut(s)	8, 47, 224, 413, 443, 494, 533, 1094
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	3 cut(s)	314, 733, 748
Alw26I	GTCTC	8 cut(s)	113, 724, 866, 920, 929, 974, 1028, 1037
AlwI	GGATC	9 cut(s)	44, 282, 306, 319, 333, 346, 361, 373, 475
Ama87I	CYCGRG	4 cut(s)	104, 386, 527, 689
ApeKI	GCWGC	3 cut(s)	228, 287, 1267
ArsI	GACNNNNNNTTYG	4 cut(s)	528, 560, 570, 602
AspLEI	GCGC	4 cut(s)	483, 502, 541, 583
AspS9I	GGNCC	3 cut(s)	208, 318, 783
AsuC2I	CCSGG	7 cut(s)	255, 351, 816, 878, 932, 986, 1040
AsuHPI	GGTGA	5 cut(s)	79, 632, 689, 836, 1214
AvaI	CYCGRG	4 cut(s)	104, 386, 527, 689
BamHI	GGATCC	2 cut(s)	311, 338
BanI	GGYRCC	1 cut(s)	499
BanII	GRGCYC	2 cut(s)	189, 351
BarI	GAAGNNNNNNTAC	2 cut(s)	425, 457
BbvI	GCAGC	3 cut(s)	240, 274, 1279
BccI	CCATC	1 cut(s)	1293
BceAI	ACGGC	3 cut(s)	79, 109, 658
BcgI	CGANNNNNNTGC	2 cut(s)	438, 472
BciT130I	CCWGG	3 cut(s)	316, 735, 750
BciVI	GTATCC	2 cut(s)	65, 632
BcnI	CCSGG	7 cut(s)	255, 351, 816, 878, 932, 986, 1040
BcoDI	GTCTC	8 cut(s)	113, 724, 866, 920, 929, 974, 1028, 1037
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	2 cut(s)	864, 1110
BfmI	CTRYAG	1 cut(s)	178
BfoI	RGCGCY	3 cut(s)	503, 542, 584
BfuAI	ACCTGC	1 cut(s)	131
BfuI	GTATCC	2 cut(s)	65, 632
BglI	GCCNNNNNGGC	3 cut(s)	206, 325, 658
BisI	GCNGC	8 cut(s)	67, 97, 229, 288, 653, 833, 1219, 1268
BlsI	GCNGC	8 cut(s)	68, 98, 230, 289, 654, 834, 1220, 1269
BmeT110I	CYCGRG	4 cut(s)	104, 386, 527, 689
BmgT120I	GGNCC	3 cut(s)	208, 318, 783
BmiI	GGNNCC	5 cut(s)	313, 340, 348, 501, 813
BmrI	ACTGGG	4 cut(s)	315, 396, 780, 1059
BmuI	ACTGGG	4 cut(s)	315, 396, 780, 1059
BpuMI	CCSGG	7 cut(s)	255, 351, 816, 878, 932, 986, 1040
BsaHI	GRCGYC	1 cut(s)	500
BsaI	GGTCTC	6 cut(s)	113, 724, 866, 920, 974, 1028
BsaWI	WCCGGW	1 cut(s)	271
BsaXI	ACNNNNNCTCC	6 cut(s)	119, 149, 1076, 1106, 1111, 1141
Bse118I	RCCGGY	2 cut(s)	541, 583
Bse1I	ACTGG	4 cut(s)	321, 402, 786, 1065
BseBI	CCWGG	3 cut(s)	316, 735, 750
BseGI	GGATG	2 cut(s)	631, 721
BseNI	ACTGG	4 cut(s)	321, 402, 786, 1065
BseX3I	CGGCCG	1 cut(s)	94
BseXI	GCAGC	3 cut(s)	240, 274, 1279
BseYI	CCCAGC	5 cut(s)	131, 845, 902, 956, 1010
Bsh1285I	CGRYCG	5 cut(s)	97, 272, 430, 546, 588
BshNI	GGYRCC	1 cut(s)	499
BsiEI	CGRYCG	5 cut(s)	97, 272, 430, 546, 588
BsiHKCI	CYCGRG	4 cut(s)	104, 386, 527, 689
BslFI	GGGAC	1 cut(s)	225
BsmAI	GTCTC	8 cut(s)	113, 724, 866, 920, 929, 974, 1028, 1037
BsmFI	GGGAC	1 cut(s)	225
Bso31I	GGTCTC	6 cut(s)	113, 724, 866, 920, 974, 1028
BsoBI	CYCGRG	4 cut(s)	104, 386, 527, 689
Bsp1286I	GDGCHC	2 cut(s)	189, 351
BspHI	TCATGA	1 cut(s)	277
BspLI	GGNNCC	5 cut(s)	313, 340, 348, 501, 813
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	9 cut(s)	44, 282, 306, 319, 333, 346, 361, 373, 475
BspT107I	GGYRCC	1 cut(s)	499
BspTNI	GGTCTC	6 cut(s)	113, 724, 866, 920, 974, 1028
BsrFI	RCCGGY	2 cut(s)	541, 583
BsrI	ACTGG	4 cut(s)	321, 402, 786, 1065
BssAI	RCCGGY	2 cut(s)	541, 583
BssNI	GRCGYC	1 cut(s)	500
Bst2UI	CCWGG	3 cut(s)	316, 735, 750
Bst4CI	ACNGT	1 cut(s)	428
Bst6I	CTCTTC	2 cut(s)	771, 1200
BstACI	GRCGYC	1 cut(s)	500
BstC8I	GCNNGC	5 cut(s)	185, 914, 968, 1022, 1100
BstF5I	GGATG	2 cut(s)	631, 721
BstH2I	RGCGCY	3 cut(s)	503, 542, 584
BstHHI	GCGC	4 cut(s)	483, 502, 541, 583
BstMAI	GTCTC	8 cut(s)	113, 724, 866, 920, 929, 974, 1028, 1037
BstMCI	CGRYCG	5 cut(s)	97, 272, 430, 546, 588
BstNI	CCWGG	3 cut(s)	316, 735, 750
BstSFI	CTRYAG	1 cut(s)	178
BstV1I	GCAGC	3 cut(s)	240, 274, 1279
BstX2I	RGATCY	3 cut(s)	311, 338, 365
BstYI	RGATCY	3 cut(s)	311, 338, 365
BstZI	CGGCCG	1 cut(s)	94
BsuI	GTATCC	2 cut(s)	65, 632
BtgZI	GCGATG	2 cut(s)	660, 1271
BtsCI	GGATG	2 cut(s)	631, 721
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	5 cut(s)	185, 914, 968, 1022, 1100
CciI	TCATGA	1 cut(s)	277
CfoI	GCGC	4 cut(s)	483, 502, 541, 583
Cfr10I	RCCGGY	2 cut(s)	541, 583
Cfr13I	GGNCC	3 cut(s)	208, 318, 783
CseI	GACGC	3 cut(s)	227, 1136, 1259
Csp6I	GTAC	8 cut(s)	7, 46, 223, 412, 442, 493, 532, 1093
CviAII	CATG	1 cut(s)	278
CviQI	GTAC	8 cut(s)	7, 46, 223, 412, 442, 493, 532, 1093
DinI	GGCGCC	1 cut(s)	501
EaeI	YGGCCR	3 cut(s)	94, 601, 1216
EagI	CGGCCG	1 cut(s)	94
Eam1104I	CTCTTC	2 cut(s)	771, 1200
EarI	CTCTTC	2 cut(s)	771, 1200
EciI	GGCGGA	4 cut(s)	84, 181, 394, 676
EclXI	CGGCCG	1 cut(s)	94
Eco147I	AGGCCT	2 cut(s)	328, 748
Eco24I	GRGCYC	2 cut(s)	189, 351
Eco31I	GGTCTC	6 cut(s)	113, 724, 866, 920, 974, 1028
Eco52I	CGGCCG	1 cut(s)	94
Eco88I	CYCGRG	4 cut(s)	104, 386, 527, 689
EcoO109I	RGGNCCY	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	314, 733, 748
EcoT38I	GRGCYC	2 cut(s)	189, 351
EgeI	GGCGCC	1 cut(s)	501
EheI	GGCGCC	1 cut(s)	501
FaeI	CATG	1 cut(s)	281
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	1 cut(s)	277
FauI	CCCGC	1 cut(s)	544
Fnu4HI	GCNGC	8 cut(s)	67, 97, 229, 288, 653, 833, 1219, 1268
FokI	GGATG	2 cut(s)	638, 728
FriOI	GRGCYC	2 cut(s)	189, 351
Fsp4HI	GCNGC	8 cut(s)	67, 97, 229, 288, 653, 833, 1219, 1268
FspBI	CTAG	2 cut(s)	864, 1110
GlaI	GCGC	4 cut(s)	482, 501, 540, 582
GluI	GCNGC	8 cut(s)	67, 97, 229, 288, 653, 833, 1219, 1268
GsaI	CCCAGC	5 cut(s)	135, 849, 906, 960, 1014
HaeII	RGCGCY	3 cut(s)	503, 542, 584
HgaI	GACGC	3 cut(s)	227, 1136, 1259
HhaI	GCGC	4 cut(s)	483, 502, 541, 583
Hin1I	GRCGYC	1 cut(s)	500
Hin1II	CATG	1 cut(s)	281
Hin6I	GCGC	4 cut(s)	481, 500, 539, 581
HinP1I	GCGC	4 cut(s)	481, 500, 539, 581
HinfI	GANTC	5 cut(s)	455, 506, 1139, 1178, 1241
HphI	GGTGA	5 cut(s)	79, 632, 689, 836, 1214
Hpy166II	GTNNAC	2 cut(s)	31, 266
Hpy188III	TCNNGA	3 cut(s)	146, 278, 809
Hpy8I	GTNNAC	2 cut(s)	31, 266
Hpy99I	CGWCG	4 cut(s)	44, 1152, 1194, 1275
HpyAV	CCTTC	3 cut(s)	120, 287, 738
HpyCH4III	ACNGT	1 cut(s)	428
Hsp92I	GRCGYC	1 cut(s)	500
Hsp92II	CATG	1 cut(s)	281
HspAI	GCGC	4 cut(s)	481, 500, 539, 581
KasI	GGCGCC	1 cut(s)	499
LmnI	GCTCC	4 cut(s)	140, 346, 811, 1084
Lsp1109I	GCAGC	3 cut(s)	240, 274, 1279
MaeI	CTAG	2 cut(s)	864, 1110
MaeIII	GTNAC	3 cut(s)	371, 422, 473
MboII	GAAGA	2 cut(s)	788, 1217
MflI	RGATCY	3 cut(s)	311, 338, 365
MhlI	GDGCHC	2 cut(s)	189, 351
Mly113I	GGCGCC	1 cut(s)	500
MlyI	GAGTC	1 cut(s)	1235
MmeI	TCCRAC	3 cut(s)	77, 410, 500
MvaI	CCWGG	3 cut(s)	316, 735, 750
NarI	GGCGCC	1 cut(s)	500
NciI	CCSGG	7 cut(s)	255, 351, 816, 878, 932, 986, 1040
NlaIII	CATG	1 cut(s)	281
NlaIV	GGNNCC	5 cut(s)	313, 340, 348, 501, 813
NmeAIII	GCCGAG	4 cut(s)	681, 693, 750, 861
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	277
PceI	AGGCCT	2 cut(s)	328, 748
PcsI	WCGNNNNNNNCGW	6 cut(s)	30, 39, 45, 111, 162, 1156
PfeI	GAWTC	4 cut(s)	455, 506, 1139, 1178
PflFI	GACNNNGTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	617
PkrI	GCNGC	8 cut(s)	68, 98, 230, 289, 654, 834, 1220, 1269
PleI	GAGTC	1 cut(s)	1235
PluTI	GGCGCC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	1235
Psp6I	CCWGG	3 cut(s)	314, 733, 748
PspFI	CCCAGC	5 cut(s)	131, 845, 902, 956, 1010
PspGI	CCWGG	3 cut(s)	314, 733, 748
PspN4I	GGNNCC	5 cut(s)	313, 340, 348, 501, 813
PspPI	GGNCC	3 cut(s)	208, 318, 783
PspXI	VCTCGAGB	1 cut(s)	104
PsuI	RGATCY	3 cut(s)	311, 338, 365
PsyI	GACNNNGTC	1 cut(s)	26
RsaI	GTAC	8 cut(s)	8, 47, 224, 413, 443, 494, 533, 1094
RsaNI	GTAC	8 cut(s)	7, 46, 223, 412, 442, 493, 532, 1093
SatI	GCNGC	8 cut(s)	67, 97, 229, 288, 653, 833, 1219, 1268
Sau96I	GGNCC	3 cut(s)	208, 318, 783
SchI	GAGTC	1 cut(s)	1235
SduI	GDGCHC	2 cut(s)	189, 351
SfcI	CTRYAG	1 cut(s)	178
SfiI	GGCCNNNNNGGCC	1 cut(s)	325
SfoI	GGCGCC	1 cut(s)	501
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
SpeI	ACTAGT	1 cut(s)	863
SseBI	AGGCCT	2 cut(s)	328, 748
SspDI	GGCGCC	1 cut(s)	499
SspMI	CTAG	2 cut(s)	864, 1110
StuI	AGGCCT	2 cut(s)	328, 748
TaaI	ACNGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	39, 105
TatI	WGTACW	2 cut(s)	222, 441
TauI	GCSGC	5 cut(s)	69, 99, 655, 835, 1221
TfiI	GAWTC	4 cut(s)	455, 506, 1139, 1178
TseI	GCWGC	3 cut(s)	228, 287, 1267
TspDTI	ATGAA	1 cut(s)	732
Tth111I	GACNNNGTC	1 cut(s)	26
Van91I	CCANNNNNTGG	1 cut(s)	617
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	864, 1110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.