Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014204.1

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

8101 .. 10894

Gene Structure 2794 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014204.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgacacgttactacacatactatacaaacaaccagaatggggcggacgacttcaatgagtgcgatccaacaccgtatgaaggtggatacgacataggattgatttacggacgtcctctgccgccatcggaggagatatgttatcgccgctcgtcgtctccggcaaaggataacaactacgactcgccggagttcaaatcatctgagccaaatgcgtatgacgagaagaagtcggagtccgaatacagcagttacatacgacagtcgtcacataaggaaaacaatgaaaatccagatttgaaacaaaatcaacagcaaccaaaaccacaagaagagcaacgacagaggtctagtgaatcttccagggaggaagagcctactctggccggtgaaggaggctacggtggtcgcaataaagtggagaaaacatggtgttcggggcggaggagggctccgattgggattcagggcggtaagtgtcatcaggctgagctcgtgttcgatgctgaaatcataatctcgcagaggataccagattggaggagactggggcagaagacggagagcttgtggagggaggaccagccaccgggaggcggcggaggcaagatcagagataaccgaggtgggcccagttgcgagggtcatcctccaattctggcaattcgaagactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008289 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.57

Weight (kDa)

5.6

Isoelectric Point (pI)

83.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AccBSI	CCGCTC	1 cut(s)	150
AciI	CCGC	7 cut(s)	44, 122, 148, 442, 471, 597, 600
AclWI	GGATC	1 cut(s)	59
AcoI	YGGCCR	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	112
AfiI	CCNNNNNNNGG	5 cut(s)	40, 80, 589, 593, 596
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	55, 196, 301
AjnI	CCWGG	1 cut(s)	362
AluBI	AGCT	2 cut(s)	493, 567
AluI	AGCT	2 cut(s)	493, 567
Alw21I	GWGCWC	1 cut(s)	495
Alw26I	GTCTC	2 cut(s)	162, 538
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	2 cut(s)	384, 629
ApaI	GGGCCC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	580, 629, 630
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	401
AsuII	TTCGAA	1 cut(s)	667
AvaII	GGWCC	1 cut(s)	580
BaeGI	GKGCMC	1 cut(s)	633
BanII	GRGCYC	3 cut(s)	454, 495, 633
BauI	CACGAG	1 cut(s)	494
BbsI	GAAGAC	1 cut(s)	563
Bbv12I	GWGCWC	1 cut(s)	495
BccI	CCATC	1 cut(s)	133
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	2 cut(s)	80, 522
BcnI	CCSGG	1 cut(s)	591
BcoDI	GTCTC	2 cut(s)	162, 538
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	2 cut(s)	80, 522
BisI	GCNGC	3 cut(s)	122, 148, 598
BlpI	GCTNAGC	1 cut(s)	489
BlsI	GCNGC	3 cut(s)	123, 149, 599
Bme1390I	CCNGG	2 cut(s)	364, 591
Bme18I	GGWCC	1 cut(s)	580
BmgT120I	GGNCC	3 cut(s)	580, 629, 630
BmiI	GGNNCC	2 cut(s)	453, 631
BmrFI	CCNGG	2 cut(s)	364, 591
BmrI	ACTGGG	2 cut(s)	557, 627
BmsI	GCATC	1 cut(s)	493
BmuI	ACTGGG	2 cut(s)	557, 627
BoxI	GACNNNNGTC	2 cut(s)	265, 346
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
Bpu1102I	GCTNAGC	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	667
BpuMI	CCSGG	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	363, 622
BsaXI	ACNNNNNCTCC	2 cut(s)	554, 584
Bsc4I	CCNNNNNNNGG	5 cut(s)	40, 80, 589, 593, 596
Bse118I	RCCGGY	1 cut(s)	386
Bse1I	ACTGG	2 cut(s)	552, 633
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	363, 622
BseGI	GGATG	1 cut(s)	646
BseLI	CCNNNNNNNGG	5 cut(s)	40, 80, 589, 593, 596
BseMII	CTCAG	2 cut(s)	195, 480
BseNI	ACTGG	2 cut(s)	552, 633
BseRI	GAGGAG	3 cut(s)	146, 460, 556
BseSI	GKGCMC	1 cut(s)	633
BshFI	GGCC	2 cut(s)	386, 631
BsiHKAI	GWGCWC	1 cut(s)	495
BsiSI	CCGG	4 cut(s)	161, 188, 387, 590
BslI	CCNNNNNNNGG	5 cut(s)	40, 80, 589, 593, 596
BsmAI	GTCTC	2 cut(s)	162, 538
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	2 cut(s)	386, 631
Bsp119I	TTCGAA	1 cut(s)	667
Bsp120I	GGGCCC	1 cut(s)	629
Bsp1286I	GDGCHC	3 cut(s)	454, 495, 633
Bsp143I	GATC	2 cut(s)	64, 609
Bsp1720I	GCTNAGC	1 cut(s)	489
BspACI	CCGC	7 cut(s)	44, 122, 148, 442, 471, 597, 600
BspANI	GGCC	2 cut(s)	386, 631
BspCNI	CTCAG	2 cut(s)	196, 481
BspLI	GGNNCC	2 cut(s)	453, 631
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	2 cut(s)	327, 366
BspT104I	TTCGAA	1 cut(s)	667
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	552, 633
BssAI	RCCGGY	1 cut(s)	386
BssECI	CCNNGG	2 cut(s)	363, 622
BssMI	GATC	2 cut(s)	64, 609
BssNI	GRCGYC	1 cut(s)	112
BssSI	CACGAG	1 cut(s)	494
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	75, 264, 404
Bst6I	CTCTTC	2 cut(s)	327, 366
BstACI	GRCGYC	1 cut(s)	112
BstBI	TTCGAA	1 cut(s)	667
BstDEI	CTNAG	2 cut(s)	204, 489
BstF5I	GGATG	1 cut(s)	646
BstKTI	GATC	2 cut(s)	67, 612
BstMAI	GTCTC	2 cut(s)	162, 538
BstMBI	GATC	2 cut(s)	64, 609
BstMWI	GCNNNNNNNGC	1 cut(s)	603
BstNI	CCWGG	1 cut(s)	364
BstPAI	GACNNNNGTC	2 cut(s)	265, 346
BstSCI	CCNGG	2 cut(s)	362, 589
BstSLI	GKGCMC	1 cut(s)	633
BstV2I	GAAGAC	1 cut(s)	563
BsuI	GTATCC	2 cut(s)	80, 522
BsuRI	GGCC	2 cut(s)	386, 631
BtsCI	GGATG	1 cut(s)	646
Cfr10I	RCCGGY	1 cut(s)	386
Cfr13I	GGNCC	3 cut(s)	580, 629, 630
CviAII	CATG	1 cut(s)	429
DdeI	CTNAG	2 cut(s)	204, 489
DpnI	GATC	2 cut(s)	66, 611
DpnII	GATC	2 cut(s)	64, 609
EaeI	YGGCCR	1 cut(s)	384
Eam1104I	CTCTTC	2 cut(s)	327, 366
EarI	CTCTTC	2 cut(s)	327, 366
EciI	GGCGGA	3 cut(s)	59, 457, 615
Ecl136II	GAGCTC	1 cut(s)	493
Eco24I	GRGCYC	3 cut(s)	454, 495, 633
Eco47I	GGWCC	1 cut(s)	580
Eco53kI	GAGCTC	1 cut(s)	493
EcoICRI	GAGCTC	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	362
EcoT38I	GRGCYC	3 cut(s)	454, 495, 633
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	432
FatI	CATG	1 cut(s)	428
Fnu4HI	GCNGC	3 cut(s)	122, 148, 598
FokI	GGATG	1 cut(s)	633
FriOI	GRGCYC	3 cut(s)	454, 495, 633
Fsp4HI	GCNGC	3 cut(s)	122, 148, 598
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	3 cut(s)	122, 148, 598
HaeIII	GGCC	2 cut(s)	386, 631
HapII	CCGG	4 cut(s)	161, 188, 387, 590
Hin1I	GRCGYC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	432
HinfI	GANTC	4 cut(s)	182, 236, 356, 463
HpaII	CCGG	4 cut(s)	161, 188, 387, 590
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	6 cut(s)	130, 205, 235, 241, 456, 614
Hpy188III	TCNNGA	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	74, 386
HpyCH4III	ACNGT	3 cut(s)	75, 264, 404
HpyCH4IV	ACGT	2 cut(s)	7, 112
HpyF10VI	GCNNNNNNNGC	1 cut(s)	603
HpyF3I	CTNAG	2 cut(s)	204, 489
HpySE526I	ACGT	2 cut(s)	7, 112
Hsp92I	GRCGYC	1 cut(s)	112
Hsp92II	CATG	1 cut(s)	432
Kzo9I	GATC	2 cut(s)	64, 609
LguI	GCTCTTC	2 cut(s)	327, 366
LmnI	GCTCC	1 cut(s)	457
LweI	GCATC	1 cut(s)	493
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	2 cut(s)	7, 112
MaeIII	GTNAC	3 cut(s)	8, 251, 267
MalI	GATC	2 cut(s)	66, 611
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	2 cut(s)	64, 609
MboII	GAAGA	5 cut(s)	238, 344, 351, 383, 568
MhlI	GDGCHC	3 cut(s)	454, 495, 633
MluCI	AATT	2 cut(s)	654, 663
MlyI	GAGTC	2 cut(s)	176, 245
MmeI	TCCRAC	2 cut(s)	92, 213
MspI	CCGG	4 cut(s)	161, 188, 387, 590
MspR9I	CCNGG	2 cut(s)	364, 591
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	2 cut(s)	64, 609
NlaIII	CATG	1 cut(s)	432
NlaIV	GGNNCC	2 cut(s)	453, 631
NmuCI	GTSAC	1 cut(s)	267
NspV	TTCGAA	1 cut(s)	667
PciSI	GCTCTTC	2 cut(s)	327, 366
PfeI	GAWTC	2 cut(s)	356, 463
PkrI	GCNGC	3 cut(s)	123, 149, 599
PleI	GAGTC	2 cut(s)	176, 244
PpsI	GAGTC	2 cut(s)	176, 244
PshAI	GACNNNNGTC	2 cut(s)	265, 346
Psp124BI	GAGCTC	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspN4I	GGNNCC	2 cut(s)	453, 631
PspOMI	GGGCCC	1 cut(s)	629
PspPI	GGNCC	3 cut(s)	580, 629, 630
SacI	GAGCTC	1 cut(s)	495
SapI	GCTCTTC	2 cut(s)	327, 366
SatI	GCNGC	3 cut(s)	122, 148, 598
Sau3AI	GATC	2 cut(s)	64, 609
Sau96I	GGNCC	3 cut(s)	580, 629, 630
SchI	GAGTC	2 cut(s)	176, 245
ScrFI	CCNGG	2 cut(s)	364, 591
SduI	GDGCHC	3 cut(s)	454, 495, 633
SetI	ASST	7 cut(s)	10, 85, 115, 350, 495, 569, 628
SfaNI	GCATC	1 cut(s)	493
SfuI	TTCGAA	1 cut(s)	667
SinI	GGWCC	1 cut(s)	580
Sse9I	AATT	2 cut(s)	654, 663
SsiI	CCGC	7 cut(s)	44, 122, 148, 442, 471, 597, 600
SspMI	CTAG	1 cut(s)	351
SstI	GAGCTC	1 cut(s)	495
StyD4I	CCNGG	2 cut(s)	362, 589
TaaI	ACNGT	3 cut(s)	75, 264, 404
TaiI	ACGT	2 cut(s)	10, 115
TaqI	TCGA	2 cut(s)	501, 667
TasI	AATT	2 cut(s)	654, 663
TauI	GCSGC	3 cut(s)	124, 150, 600
TfiI	GAWTC	2 cut(s)	356, 463
TseFI	GTSAC	1 cut(s)	267
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	2 cut(s)	93, 300
TspGWI	ACGGA	2 cut(s)	123, 575
VpaK11BI	GGWCC	1 cut(s)	580
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.