Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

36399679 .. 36399906

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0310100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGAAAAATAGGCGTAACAAACTTGCGCGGTTTCTCCACGCTAAGAATTTTATCAATAAATGGGGACCTTCCTATCTCCCTTGCAGCGGCCGCGACCAATTCTCCGGGACTAGCATTTCACACTTCTCTCAACATTTTCTCTATCTGGGACCTCCAGCTTTCATCTTTGACCTTCTTCGCTTTCTTCTGGCCATTCTCCGGCACGGATCCCGAGCTCCCTCCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

75

Amino Acids

8.65

Weight (kDa)

10.97

Isoelectric Point (pI)

50.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	28, 93
AciI	CCGC	3 cut(s)	28, 87, 91
AclWI	GGATC	2 cut(s)	201, 214
AcoI	YGGCCR	2 cut(s)	88, 189
AcsI	RAATTY	1 cut(s)	46
AfiI	CCNNNNNNNGG	2 cut(s)	86, 198
AluBI	AGCT	2 cut(s)	158, 215
AluI	AGCT	2 cut(s)	158, 215
Alw21I	GWGCWC	1 cut(s)	217
AlwI	GGATC	2 cut(s)	201, 214
Ama87I	CYCGRG	1 cut(s)	210
AoxI	GGCC	2 cut(s)	88, 189
ApeKI	GCWGC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	46
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	65, 149
AsuC2I	CCSGG	1 cut(s)	106
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	65, 149
BalI	TGGCCA	1 cut(s)	191
BamHI	GGATCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	106
BfaI	CTAG	1 cut(s)	111
BisI	GCNGC	3 cut(s)	85, 88, 91
BlsI	GCNGC	3 cut(s)	86, 89, 92
Bme1390I	CCNGG	1 cut(s)	106
Bme18I	GGWCC	2 cut(s)	65, 149
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	65, 149
BmiI	GGNNCC	3 cut(s)	66, 150, 208
BmrFI	CCNGG	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	138
BpuMI	CCSGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	86, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	86, 198
BseLI	CCNNNNNNNGG	2 cut(s)	86, 198
BseX3I	CGGCCG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	96
Bsh1236I	CGCG	2 cut(s)	28, 93
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	90, 191
BsiEI	CGRYCG	1 cut(s)	91
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	2 cut(s)	105, 199
BslFI	GGGAC	3 cut(s)	78, 121, 162
BslI	CCNNNNNNNGG	2 cut(s)	86, 198
BsmFI	GGGAC	3 cut(s)	78, 121, 162
BsnI	GGCC	2 cut(s)	90, 191
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	1 cut(s)	206
BspACI	CCGC	3 cut(s)	28, 87, 91
BspANI	GGCC	2 cut(s)	90, 191
BspFNI	CGCG	2 cut(s)	28, 93
BspLI	GGNNCC	3 cut(s)	66, 150, 208
BspPI	GGATC	2 cut(s)	201, 214
BssMI	GATC	1 cut(s)	206
BstDEI	CTNAG	1 cut(s)	42
BstFNI	CGCG	2 cut(s)	28, 93
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	209
BstMBI	GATC	1 cut(s)	206
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	104
BstUI	CGCG	2 cut(s)	28, 93
BstV1I	GCAGC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	206
BstYI	RGATCY	1 cut(s)	206
BstZI	CGGCCG	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	90, 191
CciNI	GCGGCCGC	1 cut(s)	88
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	65, 149
CviJI	RGCY	4 cut(s)	90, 158, 191, 215
CviKI_1	RGCY	4 cut(s)	90, 158, 191, 215
DdeI	CTNAG	1 cut(s)	42
DpnI	GATC	1 cut(s)	208
DpnII	GATC	1 cut(s)	206
EaeI	YGGCCR	2 cut(s)	88, 189
EagI	CGGCCG	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	215
EclXI	CGGCCG	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	217
Eco47I	GGWCC	2 cut(s)	65, 149
Eco52I	CGGCCG	1 cut(s)	88
Eco53kI	GAGCTC	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	210
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	2 cut(s)	65, 149
EcoT38I	GRGCYC	1 cut(s)	217
FaqI	GGGAC	3 cut(s)	78, 121, 162
Fnu4HI	GCNGC	3 cut(s)	85, 88, 91
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	85, 88, 91
FspBI	CTAG	1 cut(s)	111
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	3 cut(s)	85, 88, 91
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	90, 191
HapII	CCGG	2 cut(s)	105, 199
HhaI	GCGC	1 cut(s)	28
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HpaII	CCGG	2 cut(s)	105, 199
Hpy188III	TCNNGA	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	78, 182
HpyCH4V	TGCA	1 cut(s)	84
HpyF10VI	GCNNNNNNNGC	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	42
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	206
LmnI	GCTCC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	118, 131, 168, 173, 212
Lsp1109I	GCAGC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	14
MalI	GATC	1 cut(s)	208
MboI	GATC	1 cut(s)	206
MboII	GAAGA	2 cut(s)	167, 176
MflI	RGATCY	1 cut(s)	206
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	191
MluCI	AATT	2 cut(s)	46, 98
MluNI	TGGCCA	1 cut(s)	191
MnlI	CCTC	1 cut(s)	162
Mox20I	TGGCCA	1 cut(s)	191
MscI	TGGCCA	1 cut(s)	191
Msp20I	TGGCCA	1 cut(s)	191
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	105, 199
MspR9I	CCNGG	1 cut(s)	106
MvnI	CGCG	2 cut(s)	28, 93
MwoI	GCNNNNNNNGC	1 cut(s)	90
NciI	CCSGG	1 cut(s)	106
NdeII	GATC	1 cut(s)	206
NlaIV	GGNNCC	3 cut(s)	66, 150, 208
NotI	GCGGCCGC	1 cut(s)	88
PfoI	TCCNGGA	1 cut(s)	104
PkrI	GCNGC	3 cut(s)	86, 89, 92
PpuMI	RGGWCCY	2 cut(s)	65, 149
Psp124BI	GAGCTC	1 cut(s)	217
Psp5II	RGGWCCY	2 cut(s)	65, 149
PspN4I	GGNNCC	3 cut(s)	66, 150, 208
PspPI	GGNCC	2 cut(s)	65, 149
PspPPI	RGGWCCY	2 cut(s)	65, 149
PsuI	RGATCY	1 cut(s)	206
SacI	GAGCTC	1 cut(s)	217
SatI	GCNGC	3 cut(s)	85, 88, 91
Sau3AI	GATC	1 cut(s)	206
Sau96I	GGNCC	2 cut(s)	65, 149
ScrFI	CCNGG	1 cut(s)	106
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	5 cut(s)	70, 154, 160, 174, 217
SinI	GGWCC	2 cut(s)	65, 149
Sse9I	AATT	2 cut(s)	46, 98
SsiI	CCGC	3 cut(s)	28, 87, 91
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	104
TasI	AATT	2 cut(s)	46, 98
TauI	GCSGC	2 cut(s)	90, 93
TseI	GCWGC	1 cut(s)	84
TspDTI	ATGAA	2 cut(s)	17, 151
TspGWI	ACGGA	1 cut(s)	219
VpaK11BI	GGWCC	2 cut(s)	65, 149
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.