Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

2795832 .. 2797913

Gene Structure 2082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGCCGTACTACACGCACGCCCAGGACGAAGCCACTTACTTCGAAGAGTACGATCCGACGCCCTACGGCGGGGGATACGACATTTATCTGACCTTCGGCCGCCCTCTCGACCCGTCCGACGAGACCTGCCACCCCAACTCATCGCCGACTGATGATTTCGATTACGATCGCCCCCAGTTCTCGTCGTATTCCGAGCCCTCCGCCTACGCCGACGAGGCTCTCGAAGACGAGTACACACACTACGCCCGACCCGCGCACCGACCCGGACCAGCTGTCGGGTTCAATCCCGGCGGGGGACATCCAGAGGGAGAGTACGAAGGAAGGCCCCAGCCGGCCTATGGTTTCCAGCCTGGTGGGGAGGAGAGACCCGAGTTCGGATCCGAGAGGCCTGAATCGGGTTATGGTCGGAAGCCCGAGTATGGACAATCCGGTTCGGAATACGGCTCTGGGTACCAACGAAGGCCCGAAGCTGATGAGCCCAGCTCCGAATACACTGGGTACGGTCGGAAGCCGGAACACGAGGCGCTCGAATCGGAGTATGGATCTGGGCACGGGCGAAAGCCTGAGTATAAAGCACCCGAACCCGAGTATGGATCTGGGTACGGGAGAAAGCCCGAGAATAAGGCACCCGAACCCGAGTATGGATCTGGGTACGGGAGAAAGCCCGCACCCGAACCCGAGTATGGATCTGGGTACGGGAGAAAGCCCGAGTACGAGGCACCCGAGTCCGAATATGGATCTGGGTACGGGCGAAAGCCCGAGTTTGAGGCACCGCCAGCTGAATTCGGATCTGGGTATGGTCGGAAGCCCAGCTACGGTGAGGAATCTGGTTATGGCGAAGAGCCACCGAGAAAGCCGAGCTATGGTGAGGAGGGTAGTTATGGCGAAGAGCCGCCGAGAAGGCCAAGCTATGGGCAGCCCAGCTATGAGACGCCAGAAAGCGAGGAGAGGCCGAGCTATGGGAGGACCGAGTTTGAGAGGCCGGGTCACGGCGAAGAGCCGCCGCGGAGGACCGGCTATGGAGATGAGCCGCCACCGCCGAGGAGGACCGGCTATGGAGATGAGCCGACCGGTTATGGAGATGAGCCGCCACCGCCGCGGAGGACCGGCTATGGAGATGAGCCGCCACCGCCGAGGAGGACCGGCTATGGAGATGAGCCGCCACCGCCGAGGATGACCGGTTATGGAGATGAGCCGCCACCCCCGAGGCCTAGCTATGGGAGGCCCAGCTATGAGGGCCAGGAAAGTGGGGAGTATGAGAAGCCCAGCTATGGGAGGAGCGAGGAGCAGGGGTACGGTGAAGAAGGCTATGGTCGCAAGAAATATGGAAATGACGACTCAGATGACGATGAGGAGAAAAAGCAGCGCCGCCACAAGCACCACCACCAACGCAAGAGCTATGACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

471

Amino Acids

52.72

Weight (kDa)

4.74

Isoelectric Point (pI)

65.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
Acc65I	GGTACC	1 cut(s)	450
AccB1I	GGYRCC	4 cut(s)	450, 625, 718, 769
AccB7I	CCANNNNNTGG	1 cut(s)	911
AccII	CGCG	3 cut(s)	254, 1006, 1099
AclWI	GGATC	9 cut(s)	47, 372, 385, 550, 601, 652, 694, 745, 796
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	782
AcyI	GRCGYC	2 cut(s)	59, 932
AgeI	ACCGGT	2 cut(s)	1070, 1178
AgsI	TTSAA	1 cut(s)	283
AhdI	GACNNNNNGTC	1 cut(s)	272
AjnI	CCWGG	3 cut(s)	21, 349, 1239
Alw26I	GTCTC	3 cut(s)	116, 358, 923
AlwI	GGATC	9 cut(s)	47, 372, 385, 550, 601, 652, 694, 745, 796
ApeKI	GCWGC	2 cut(s)	916, 1363
ApoI	RAATTY	1 cut(s)	782
AsiGI	ACCGGT	2 cut(s)	1070, 1178
Asp718I	GGTACC	1 cut(s)	450
AspLEI	GCGC	3 cut(s)	256, 526, 1368
AsuC2I	CCSGG	3 cut(s)	264, 288, 984
AsuHPI	GGTGA	3 cut(s)	830, 878, 1310
AsuII	TTCGAA	1 cut(s)	42
AvaII	GGWCC	6 cut(s)	266, 966, 1011, 1047, 1104, 1140
BaeGI	GKGCMC	1 cut(s)	552
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	4 cut(s)	450, 625, 718, 769
BanII	GRGCYC	2 cut(s)	198, 480
BarI	GAAGNNNNNNTAC	2 cut(s)	797, 829
BauI	CACGAG	1 cut(s)	518
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	928, 1375
BceAI	ACGGC	3 cut(s)	82, 457, 1006
BciT130I	CCWGG	3 cut(s)	23, 351, 1241
BciVI	GTATCC	1 cut(s)	68
BcnI	CCSGG	3 cut(s)	264, 288, 984
BcoDI	GTCTC	3 cut(s)	116, 358, 923
BfaI	CTAG	1 cut(s)	1212
BfoI	RGCGCY	2 cut(s)	527, 1369
BfuAI	ACCTGC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	68
BglI	GCCNNNNNGGC	2 cut(s)	215, 901
Bme1390I	CCNGG	6 cut(s)	23, 264, 288, 351, 984, 1241
Bme18I	GGWCC	6 cut(s)	266, 966, 1011, 1047, 1104, 1140
BmeRI	GACNNNNNGTC	1 cut(s)	272
BmiI	GGNNCC	6 cut(s)	326, 379, 452, 627, 720, 771
BmrFI	CCNGG	6 cut(s)	23, 264, 288, 351, 984, 1241
BmrI	ACTGGG	2 cut(s)	169, 504
BmuI	ACTGGG	2 cut(s)	169, 504
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	467, 499
Bpu14I	TTCGAA	1 cut(s)	42
BpuMI	CCSGG	3 cut(s)	264, 288, 984
BsaBI	GATNNNNATC	1 cut(s)	165
BsaHI	GRCGYC	2 cut(s)	59, 932
BsaI	GGTCTC	2 cut(s)	116, 358
BsaJI	CCNNGG	7 cut(s)	21, 1004, 1040, 1097, 1133, 1169, 1205
BsaWI	WCCGGW	3 cut(s)	428, 1070, 1178
BsaXI	ACNNNNNCTCC	2 cut(s)	1277, 1307
Bse118I	RCCGGY	7 cut(s)	331, 1013, 1049, 1070, 1106, 1142, 1178
Bse1I	ACTGG	2 cut(s)	175, 499
Bse8I	GATNNNNATC	1 cut(s)	165
BseBI	CCWGG	3 cut(s)	23, 351, 1241
BseDI	CCNNGG	7 cut(s)	21, 1004, 1040, 1097, 1133, 1169, 1205
BseGI	GGATG	2 cut(s)	298, 1179
BseJI	GATNNNNATC	1 cut(s)	165
BseMII	CTCAG	2 cut(s)	555, 1353
BseNI	ACTGG	2 cut(s)	175, 499
BseRI	GAGGAG	8 cut(s)	374, 884, 959, 1057, 1150, 1291, 1298, 1367
BseSI	GKGCMC	1 cut(s)	552
BseX3I	CGGCCG	1 cut(s)	97
BseXI	GCAGC	2 cut(s)	928, 1375
BseYI	CCCAGC	6 cut(s)	327, 479, 809, 920, 1226, 1265
Bsh1236I	CGCG	3 cut(s)	254, 1006, 1099
Bsh1285I	CGRYCG	4 cut(s)	100, 169, 505, 1071
BshNI	GGYRCC	4 cut(s)	450, 625, 718, 769
BshTI	ACCGGT	2 cut(s)	1070, 1178
BsiEI	CGRYCG	4 cut(s)	100, 169, 505, 1071
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	3 cut(s)	116, 358, 923
BsmBI	CGTCTC	1 cut(s)	923
BsmFI	GGGAC	1 cut(s)	309
Bso31I	GGTCTC	2 cut(s)	116, 358
Bsp119I	TTCGAA	1 cut(s)	42
Bsp1286I	GDGCHC	3 cut(s)	198, 480, 552
Bsp143I	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
BspCNI	CTCAG	2 cut(s)	556, 1352
BspFNI	CGCG	3 cut(s)	254, 1006, 1099
BspLI	GGNNCC	6 cut(s)	326, 379, 452, 627, 720, 771
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	9 cut(s)	47, 372, 385, 550, 601, 652, 694, 745, 796
BspQI	GCTCTTC	3 cut(s)	834, 882, 990
BspT104I	TTCGAA	1 cut(s)	42
BspT107I	GGYRCC	4 cut(s)	450, 625, 718, 769
BspTNI	GGTCTC	2 cut(s)	116, 358
BsrFI	RCCGGY	7 cut(s)	331, 1013, 1049, 1070, 1106, 1142, 1178
BsrI	ACTGG	2 cut(s)	175, 499
BssAI	RCCGGY	7 cut(s)	331, 1013, 1049, 1070, 1106, 1142, 1178
BssECI	CCNNGG	7 cut(s)	21, 1004, 1040, 1097, 1133, 1169, 1205
BssMI	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
BssNI	GRCGYC	2 cut(s)	59, 932
BssSI	CACGAG	1 cut(s)	518
Bst2BI	CACGAG	1 cut(s)	518
Bst2UI	CCWGG	3 cut(s)	23, 351, 1241
Bst4CI	ACNGT	3 cut(s)	503, 818, 1298
Bst6I	CTCTTC	4 cut(s)	39, 834, 882, 990
BstACI	GRCGYC	2 cut(s)	59, 932
BstBI	TTCGAA	1 cut(s)	42
BstC8I	GCNNGC	4 cut(s)	18, 333, 666, 777
BstDEI	CTNAG	2 cut(s)	564, 1339
BstDSI	CCRYGG	2 cut(s)	1004, 1097
BstF5I	GGATG	2 cut(s)	298, 1179
BstFNI	CGCG	3 cut(s)	254, 1006, 1099
BstH2I	RGCGCY	2 cut(s)	527, 1369
BstHHI	GCGC	3 cut(s)	256, 526, 1368
BstKTI	GATC	9 cut(s)	55, 169, 380, 545, 596, 647, 689, 740, 791
BstMAI	GTCTC	3 cut(s)	116, 358, 923
BstMBI	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
BstMCI	CGRYCG	4 cut(s)	100, 169, 505, 1071
BstNI	CCWGG	3 cut(s)	23, 351, 1241
BstSCI	CCNGG	6 cut(s)	21, 262, 286, 349, 982, 1239
BstSLI	GKGCMC	1 cut(s)	552
BstUI	CGCG	3 cut(s)	254, 1006, 1099
BstV1I	GCAGC	2 cut(s)	928, 1375
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	7 cut(s)	377, 542, 593, 644, 686, 737, 788
BstXI	CCANNNNNNTGG	2 cut(s)	353, 1247
BstYI	RGATCY	7 cut(s)	377, 542, 593, 644, 686, 737, 788
BstZI	CGGCCG	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	68
BtgI	CCRYGG	2 cut(s)	1004, 1097
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	2 cut(s)	298, 1179
BtsIMutI	CAGTG	1 cut(s)	492
BveI	ACCTGC	1 cut(s)	134
Cac8I	GCNNGC	4 cut(s)	18, 333, 666, 777
CfoI	GCGC	3 cut(s)	256, 526, 1368
Cfr10I	RCCGGY	7 cut(s)	331, 1013, 1049, 1070, 1106, 1142, 1178
Cfr42I	CCGCGG	2 cut(s)	1007, 1100
CseI	GACGC	2 cut(s)	67, 940
CspAI	ACCGGT	2 cut(s)	1070, 1178
DdeI	CTNAG	2 cut(s)	564, 1339
DpnI	GATC	9 cut(s)	54, 168, 379, 544, 595, 646, 688, 739, 790
DpnII	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
DriI	GACNNNNNGTC	1 cut(s)	272
EaeI	YGGCCR	1 cut(s)	97
EagI	CGGCCG	1 cut(s)	97
Eam1104I	CTCTTC	4 cut(s)	39, 834, 882, 990
Eam1105I	GACNNNNNGTC	1 cut(s)	272
EarI	CTCTTC	4 cut(s)	39, 834, 882, 990
EciI	GGCGGA	1 cut(s)	190
EclXI	CGGCCG	1 cut(s)	97
Eco147I	AGGCCT	2 cut(s)	388, 1210
Eco24I	GRGCYC	2 cut(s)	198, 480
Eco31I	GGTCTC	2 cut(s)	116, 358
Eco47I	GGWCC	6 cut(s)	266, 966, 1011, 1047, 1104, 1140
Eco52I	CGGCCG	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	324
EcoRI	GAATTC	1 cut(s)	782
EcoRII	CCWGG	3 cut(s)	21, 349, 1239
EcoT38I	GRGCYC	2 cut(s)	198, 480
Esp3I	CGTCTC	1 cut(s)	923
FaqI	GGGAC	1 cut(s)	309
FauI	CCCGC	4 cut(s)	62, 259, 284, 673
FokI	GGATG	2 cut(s)	285, 1186
FriOI	GRGCYC	2 cut(s)	198, 480
FspBI	CTAG	1 cut(s)	1212
GlaI	GCGC	3 cut(s)	255, 525, 1367
GsaI	CCCAGC	6 cut(s)	331, 483, 813, 924, 1230, 1269
HaeII	RGCGCY	2 cut(s)	527, 1369
HgaI	GACGC	2 cut(s)	67, 940
HhaI	GCGC	3 cut(s)	256, 526, 1368
Hin1I	GRCGYC	2 cut(s)	59, 932
Hin6I	GCGC	3 cut(s)	254, 524, 1366
HinP1I	GCGC	3 cut(s)	254, 524, 1366
HinfI	GANTC	5 cut(s)	392, 530, 725, 824, 1337
HphI	GGTGA	3 cut(s)	830, 878, 1310
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	3 cut(s)	107, 221, 302
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	4 cut(s)	61, 122, 187, 215
HpyAV	CCTTC	6 cut(s)	103, 311, 315, 453, 894, 1298
HpyCH4III	ACNGT	3 cut(s)	503, 818, 1298
HpyF3I	CTNAG	2 cut(s)	564, 1339
Hsp92I	GRCGYC	2 cut(s)	59, 932
HspAI	GCGC	3 cut(s)	254, 524, 1366
KpnI	GGTACC	1 cut(s)	454
KroI	GCCGGC	1 cut(s)	331
KroNI	GCCGGC	1 cut(s)	333
KspI	CCGCGG	2 cut(s)	1007, 1100
Kzo9I	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
LguI	GCTCTTC	3 cut(s)	834, 882, 990
LmnI	GCTCC	3 cut(s)	488, 1278, 1285
Lsp1109I	GCAGC	2 cut(s)	928, 1375
MaeI	CTAG	1 cut(s)	1212
MaeIII	GTNAC	1 cut(s)	986
MalI	GATC	9 cut(s)	54, 168, 379, 544, 595, 646, 688, 739, 790
MboI	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
MboII	GAAGA	6 cut(s)	56, 236, 851, 899, 1007, 1313
MflI	RGATCY	7 cut(s)	377, 542, 593, 644, 686, 737, 788
MhlI	GDGCHC	3 cut(s)	198, 480, 552
MluCI	AATT	1 cut(s)	782
MlyI	GAGTC	2 cut(s)	734, 1331
MmeI	TCCRAC	5 cut(s)	80, 141, 386, 485, 782
MroNI	GCCGGC	1 cut(s)	331
MspA1I	CMGCKG	4 cut(s)	272, 779, 1006, 1099
MspR9I	CCNGG	6 cut(s)	23, 264, 288, 351, 984, 1241
MvaI	CCWGG	3 cut(s)	23, 351, 1241
MvnI	CGCG	3 cut(s)	254, 1006, 1099
NaeI	GCCGGC	1 cut(s)	333
NciI	CCSGG	3 cut(s)	264, 288, 984
NdeII	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
NgoMIV	GCCGGC	1 cut(s)	331
NlaIV	GGNNCC	6 cut(s)	326, 379, 452, 627, 720, 771
NmeAIII	GCCGAG	6 cut(s)	882, 921, 978, 1065, 1158, 1194
NmuCI	GTSAC	1 cut(s)	986
NspV	TTCGAA	1 cut(s)	42
PceI	AGGCCT	2 cut(s)	388, 1210
PciSI	GCTCTTC	3 cut(s)	834, 882, 990
PcsI	WCGNNNNNNNCGW	6 cut(s)	24, 48, 114, 219, 525, 720
PdiI	GCCGGC	1 cut(s)	333
PfeI	GAWTC	3 cut(s)	392, 530, 824
PflMI	CCANNNNNTGG	1 cut(s)	911
PinAI	ACCGGT	2 cut(s)	1070, 1178
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	2 cut(s)	733, 1331
PpsI	GAGTC	2 cut(s)	733, 1331
Psp6I	CCWGG	3 cut(s)	21, 349, 1239
PspFI	CCCAGC	6 cut(s)	327, 479, 809, 920, 1226, 1265
PspGI	CCWGG	3 cut(s)	21, 349, 1239
PspN4I	GGNNCC	6 cut(s)	326, 379, 452, 627, 720, 771
PsuI	RGATCY	7 cut(s)	377, 542, 593, 644, 686, 737, 788
PvuI	CGATCG	1 cut(s)	169
PvuII	CAGCTG	2 cut(s)	272, 779
SacII	CCGCGG	2 cut(s)	1007, 1100
SapI	GCTCTTC	3 cut(s)	834, 882, 990
Sau3AI	GATC	9 cut(s)	52, 166, 377, 542, 593, 644, 686, 737, 788
SchI	GAGTC	2 cut(s)	734, 1331
ScrFI	CCNGG	6 cut(s)	23, 264, 288, 351, 984, 1241
SduI	GDGCHC	3 cut(s)	198, 480, 552
Sfr303I	CCGCGG	2 cut(s)	1007, 1100
SfuI	TTCGAA	1 cut(s)	42
SgrBI	CCGCGG	2 cut(s)	1007, 1100
SinI	GGWCC	6 cut(s)	266, 966, 1011, 1047, 1104, 1140
Sse9I	AATT	1 cut(s)	782
SseBI	AGGCCT	2 cut(s)	388, 1210
SspMI	CTAG	1 cut(s)	1212
StuI	AGGCCT	2 cut(s)	388, 1210
StyD4I	CCNGG	6 cut(s)	21, 262, 286, 349, 982, 1239
TaaI	ACNGT	3 cut(s)	503, 818, 1298
TaqI	TCGA	5 cut(s)	42, 108, 159, 222, 528
TaqII	GACCGA	1 cut(s)	983
TasI	AATT	1 cut(s)	782
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	3 cut(s)	392, 530, 824
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	986
TseI	GCWGC	2 cut(s)	916, 1363
Tsp45I	GTSAC	1 cut(s)	986
TspRI	CASTG	1 cut(s)	499
Van91I	CCANNNNNTGG	1 cut(s)	911
VpaK11BI	GGWCC	6 cut(s)	266, 966, 1011, 1047, 1104, 1140
XapI	RAATTY	1 cut(s)	782
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XspI	CTAG	1 cut(s)	1212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.