Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

31298987 .. 31299495

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024056

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGTCATCAGGCCGATTGGGATTGGGGGCGGTAACTGTCATCGGGTGGACCTCGCATTCGAGGCCGAAATCAGAATTCTCGAAGAGGACGCCGGAGTGGAGGAGGCTGGGGCAGAAGATGGCGAGCTTGTGGAGGGAGGACCAGCCACCGGGAGGCTCGGAGGAGACCCAGTTCGATTCACTCGTGTGTTCGAAGTTTGATGTGGTCATAGAAGATAAGCTTCCAAAGCTGGTTTCCGACTCCGAACCACTACAAAACTCCGAGCCCATTGGGTCCAACACTTCATGCGACTCCCCAGTCACTTCAGCCCTTCATGGAAATCATAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.0

Weight (kDa)

5.87

Isoelectric Point (pI)

75.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	296
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	148, 152
AjuI	GAANNNNNNNTTGG	2 cut(s)	217, 249
AleI	CACNNNNGTG	1 cut(s)	184
AloI	GAACNNNNNNTCC	2 cut(s)	155, 187
AluBI	AGCT	4 cut(s)	126, 220, 229, 330
AluI	AGCT	4 cut(s)	126, 220, 229, 330
Alw26I	GTCTC	1 cut(s)	158
AoxI	GGCC	2 cut(s)	10, 62
ApeKI	GCWGC	1 cut(s)	327
ApoI	RAATTY	1 cut(s)	74
ArsI	GACNNNNNNTTYG	2 cut(s)	40, 72
AspS9I	GGNCC	3 cut(s)	48, 139, 273
AsuC2I	CCSGG	1 cut(s)	150
AsuII	TTCGAA	1 cut(s)	191
AvaII	GGWCC	3 cut(s)	48, 139, 273
BanII	GRGCYC	1 cut(s)	267
BauI	CACGAG	1 cut(s)	182
BccI	CCATC	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	158
BisI	GCNGC	1 cut(s)	328
BlsI	GCNGC	1 cut(s)	329
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	3 cut(s)	48, 139, 273
BmgT120I	GGNCC	3 cut(s)	48, 139, 273
BmiI	GGNNCC	1 cut(s)	274
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	2 cut(s)	163, 290
BmuI	ACTGGG	2 cut(s)	163, 290
Bpu14I	TTCGAA	1 cut(s)	191
BpuMI	CCSGG	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	89
BsaI	GGTCTC	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	148, 152
Bse1I	ACTGG	2 cut(s)	169, 296
BseLI	CCNNNNNNNGG	2 cut(s)	148, 152
BseNI	ACTGG	2 cut(s)	169, 296
BseRI	GAGGAG	2 cut(s)	115, 176
BseYI	CCCAGC	1 cut(s)	106
BshFI	GGCC	2 cut(s)	12, 64
BsiSI	CCGG	2 cut(s)	92, 149
BslI	CCNNNNNNNGG	2 cut(s)	148, 152
BsmAI	GTCTC	1 cut(s)	158
BsmI	GAATGC	1 cut(s)	55
BsnI	GGCC	2 cut(s)	12, 64
Bso31I	GGTCTC	1 cut(s)	158
Bsp119I	TTCGAA	1 cut(s)	191
Bsp1286I	GDGCHC	1 cut(s)	267
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	12, 64
BspLI	GGNNCC	1 cut(s)	274
BspT104I	TTCGAA	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	169, 296
BssNI	GRCGYC	1 cut(s)	89
BssSI	CACGAG	1 cut(s)	182
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	77
BstACI	GRCGYC	1 cut(s)	89
BstBI	TTCGAA	1 cut(s)	191
BstC8I	GCNNGC	1 cut(s)	124
BstMAI	GTCTC	1 cut(s)	158
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 226
BstSCI	CCNGG	1 cut(s)	148
BsuRI	GGCC	2 cut(s)	12, 64
Cac8I	GCNNGC	1 cut(s)	124
Cfr13I	GGNCC	3 cut(s)	48, 139, 273
CseI	GACGC	1 cut(s)	97
CviAII	CATG	2 cut(s)	285, 314
DrdI	GACNNNNNNGTC	1 cut(s)	296
DseDI	GACNNNNNNGTC	1 cut(s)	296
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	267
Eco31I	GGTCTC	1 cut(s)	158
Eco47I	GGWCC	3 cut(s)	48, 139, 273
Eco57I	CTGAAG	1 cut(s)	288
EcoRI	GAATTC	1 cut(s)	74
EcoT38I	GRGCYC	1 cut(s)	267
FaeI	CATG	2 cut(s)	288, 317
FaiI	YATR	4 cut(s)	209, 286, 315, 324
FalI	AAGNNNNNCTT	2 cut(s)	204, 236
FatI	CATG	2 cut(s)	284, 313
Fnu4HI	GCNGC	1 cut(s)	328
FriOI	GRGCYC	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	328
GluI	GCNGC	1 cut(s)	328
GsaI	CCCAGC	1 cut(s)	110
HaeIII	GGCC	2 cut(s)	12, 64
HapII	CCGG	2 cut(s)	92, 149
HgaI	GACGC	1 cut(s)	97
Hin1I	GRCGYC	1 cut(s)	89
Hin1II	CATG	2 cut(s)	288, 317
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	3 cut(s)	176, 239, 290
HpaII	CCGG	2 cut(s)	92, 149
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	5 cut(s)	73, 160, 238, 244, 262
Hpy188III	TCNNGA	1 cut(s)	79
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	37
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 226
Hsp92I	GRCGYC	1 cut(s)	89
Hsp92II	CATG	2 cut(s)	288, 317
LpnPI	CCDG	7 cut(s)	92, 105, 155, 162, 182, 215, 309
MaeIII	GTNAC	2 cut(s)	31, 298
MboII	GAAGA	3 cut(s)	94, 127, 224
MhlI	GDGCHC	1 cut(s)	267
MluCI	AATT	1 cut(s)	74
MlyI	GAGTC	2 cut(s)	233, 284
MmeI	TCCRAC	2 cut(s)	261, 300
MnlI	CCTC	9 cut(s)	54, 61, 78, 93, 96, 126, 130, 146, 154
MslI	CAYNNNNRTG	1 cut(s)	184
MspI	CCGG	2 cut(s)	92, 149
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	55
MwoI	GCNNNNNNNGC	2 cut(s)	61, 226
NciI	CCSGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	288, 317
NlaIV	GGNNCC	1 cut(s)	274
NmuCI	GTSAC	1 cut(s)	298
NspV	TTCGAA	1 cut(s)	191
OliI	CACNNNNGTG	1 cut(s)	184
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	329
PleI	GAGTC	2 cut(s)	233, 284
PpsI	GAGTC	2 cut(s)	233, 284
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	3 cut(s)	48, 139, 273
RseI	CAYNNNNRTG	1 cut(s)	184
SatI	GCNGC	1 cut(s)	328
Sau96I	GGNCC	3 cut(s)	48, 139, 273
SchI	GAGTC	2 cut(s)	233, 284
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	267
SetI	ASST	5 cut(s)	53, 128, 222, 231, 332
SfuI	TTCGAA	1 cut(s)	191
SinI	GGWCC	3 cut(s)	48, 139, 273
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	4 cut(s)	59, 80, 174, 191
TasI	AATT	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	176
TseFI	GTSAC	1 cut(s)	298
TseI	GCWGC	1 cut(s)	327
Tsp45I	GTSAC	1 cut(s)	298
TspDTI	ATGAA	2 cut(s)	273, 302
VpaK11BI	GGWCC	3 cut(s)	48, 139, 273
XapI	RAATTY	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.