FvH4_2g10581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0002017
Physical Location & Seq
Reverse (-)
9365150 .. 9365604
455 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g10581.t1

Sequence Viewer

Length: 330 bp
ATGAACAGTAATGACTTGAATATTGAAGCAGCTTCAAGGGAGTCGAGATTGGTCGAGAAGATTGAAGTGGCCACAACCCAGTTGCGTCGCCGCCCACCACATCCGATATATATGTCGCCGTCGTCTTCTCCTCCTTCCGACGACGAGCTTTTTCAGTCGCATCTCAAATCCGTCGTCGAGATTCTCTATCATCAACGAGCTGCTCTAGAGAGAGGGAGACCTGAGGGAGAGAGAAGGTGGCCGAAGGGAAGCAGGCGACGAGGTCGAGGAGCGTGTCATCGTCGGCTGCAGGTGTGGACATCATCAAAGGTGGAGATCGGAGAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.59

Weight (kDa)

10.32

Isoelectric Point (pI)

111.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 280
Acc36I ACCTGC 1 cut(s) 280
AciI CCGC 1 cut(s) 91
AcoI YGGCCR 2 cut(s) 69, 239
AgsI TTSAA 4 cut(s) 19, 26, 36, 65
AluBI AGCT 3 cut(s) 32, 148, 200
AluI AGCT 3 cut(s) 32, 148, 200
Alw26I GTCTC 1 cut(s) 211
AoxI GGCC 2 cut(s) 69, 239
ApeKI GCWGC 3 cut(s) 29, 200, 286
ArsI GACNNNNNNTTYG 2 cut(s) 159, 191
AxyI CCTNAGG 1 cut(s) 222
BalI TGGCCA 1 cut(s) 71
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 3 cut(s) 41, 187, 273
BceAI ACGGC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 287
BfuAI ACCTGC 1 cut(s) 280
BisI GCNGC 4 cut(s) 30, 91, 201, 287
BlsI GCNGC 4 cut(s) 31, 92, 202, 288
BmrI ACTGGG 1 cut(s) 73
BmsI GCATC 1 cut(s) 169
BmuI ACTGGG 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 79
Bse21I CCTNAGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 79
BseRI GAGGAG 2 cut(s) 120, 282
BseXI GCAGC 3 cut(s) 41, 187, 273
BshFI GGCC 2 cut(s) 71, 241
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 2 cut(s) 71, 241
Bso31I GGTCTC 1 cut(s) 211
Bsp143I GATC 1 cut(s) 315
BspACI CCGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 71, 241
BspCNI CTCAG 1 cut(s) 214
BspMAI CTGCAG 1 cut(s) 291
BspMI ACCTGC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 211
BsrI ACTGG 1 cut(s) 79
BssMI GATC 1 cut(s) 315
Bst4CI ACNGT 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 100
BstKTI GATC 1 cut(s) 318
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 315
BstSFI CTRYAG 1 cut(s) 287
BstV1I GCAGC 3 cut(s) 41, 187, 273
BstV2I GAAGAC 1 cut(s) 117
Bsu36I CCTNAGG 1 cut(s) 222
BsuRI GGCC 2 cut(s) 71, 241
BtsCI GGATG 1 cut(s) 100
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 254
CseI GACGC 1 cut(s) 74
CviJI RGCY 6 cut(s) 32, 71, 148, 200, 241, 286
CviKI_1 RGCY 6 cut(s) 32, 71, 148, 200, 241, 286
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 317
DpnII GATC 1 cut(s) 315
EaeI YGGCCR 2 cut(s) 69, 239
Eco31I GGTCTC 1 cut(s) 211
Eco81I CCTNAGG 1 cut(s) 222
FaiI YATR 3 cut(s) 109, 111, 113
Fnu4HI GCNGC 4 cut(s) 30, 91, 201, 287
FokI GGATG 1 cut(s) 87
Fsp4HI GCNGC 4 cut(s) 30, 91, 201, 287
FspBI CTAG 1 cut(s) 206
GluI GCNGC 4 cut(s) 30, 91, 201, 287
HaeIII GGCC 2 cut(s) 71, 241
HgaI GACGC 1 cut(s) 74
HinfI GANTC 2 cut(s) 41, 181
Hpy166II GTNNAC 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 105, 139, 320
Hpy188III TCNNGA 4 cut(s) 45, 55, 178, 206
Hpy8I GTNNAC 1 cut(s) 297
Hpy99I CGWCG 8 cut(s) 90, 124, 143, 146, 176, 179, 261, 285
HpyAV CCTTC 3 cut(s) 144, 228, 238
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 1 cut(s) 289
HpyF3I CTNAG 1 cut(s) 222
Kzo9I GATC 1 cut(s) 315
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 4 cut(s) 92, 234, 238, 275
Lsp1109I GCAGC 3 cut(s) 41, 187, 273
LweI GCATC 1 cut(s) 169
MaeI CTAG 1 cut(s) 206
MalI GATC 1 cut(s) 317
MboI GATC 1 cut(s) 315
MboII GAAGA 2 cut(s) 70, 117
MlsI TGGCCA 1 cut(s) 71
MluNI TGGCCA 1 cut(s) 71
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 1 cut(s) 162
MnlI CCTC 5 cut(s) 141, 206, 217, 254, 260
Mox20I TGGCCA 1 cut(s) 71
MscI TGGCCA 1 cut(s) 71
Msp20I TGGCCA 1 cut(s) 71
NdeII GATC 1 cut(s) 315
PaqCI CACCTGC 1 cut(s) 280
PfeI GAWTC 1 cut(s) 181
PflFI GACNNNGTC 1 cut(s) 261
PkrI GCNGC 4 cut(s) 31, 92, 202, 288
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 291
PsyI GACNNNGTC 1 cut(s) 261
SatI GCNGC 4 cut(s) 30, 91, 201, 287
Sau3AI GATC 1 cut(s) 315
SchI GAGTC 1 cut(s) 50
SetI ASST 8 cut(s) 34, 150, 202, 223, 239, 265, 294, 312
SfaNI GCATC 1 cut(s) 169
SfcI CTRYAG 1 cut(s) 287
SsiI CCGC 1 cut(s) 91
SspI AATATT 1 cut(s) 22
SspMI CTAG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 4 cut(s) 44, 54, 177, 265
TauI GCSGC 1 cut(s) 93
TfiI GAWTC 1 cut(s) 181
TseI GCWGC 3 cut(s) 29, 200, 286
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 160
Tth111I GACNNNGTC 1 cut(s) 261
XbaI TCTAGA 1 cut(s) 205
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.