Prupe.3G263800_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
24847857 .. 24850966
3110 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G263800.1

Sequence Viewer

Length: 1359 bp
ATGCCGTACTACACAGCTGTCGGCGATGACGAAGTTCACGACTTCGACGAGTACGATCCGACGCCGTACGGTGGCGGATACGATTTGTTTCTGACCTACGGCCGTGCTCTCGAGCCGTCGGATGAGACCTGCTACCCTAACTCATCGCCTTCCGATGATTTCGATTATGAGCGGCCCCAATTTTCATCGTACTCTGAGCCCTCTGCATATGACGAAGAGGCTCTCGACAACGAGTACAGCAGCTACGCCCGGCCCACGCACCTACCCGGACCCGCCATTGGGTTCACTCCAGGTGGAGGCGATCCCGAGGGAGAGCACGGAGGGAGGCCCCAACCGGCTTATGGGTTCCAGCCTGGCGGAGAGGATAGACCCGAGTATGGATCCGAGAGGCCCGATTTGGGTCATGGGTCTGGGTATGGTCGGAAGCCGGGGTATGAACAGCCCGGTTCGGAATACGGTTCTGGGTATCGACGGAGACCAGAGTCCGATGAGCCCAGTTCCGAGTATGGATCTGGGTATGGCCGAAAGCCAGTGTACGAGACGCCTGAACCCGAGTATGGATCTGGGTATGGCCGAAAGCCCGAGTACGAGACGCCTGAACCCGAGTATGGATCTGGGTACGGTCGAAAGCCCGAGTACGAGACGCCTGAACCCGAGTATGGATCTGGGTACGGGCGAAAGCCCGAGTACGAGGCTCCCGAATCTGAGCATGGATCTGGGTATGGGCGAAAGCCTGAGTTCGAAGCACCGGGAGCTGGATTCGGGTCTGGGTATGAACGGAAGCCGAGTTATGGCGAGGAGCCTGGTTATGGAGATGAGCCGCCGAGAAAGCCAAGCTATGGGAGGCCCAGTTATGAGACCTCAGAAAGTGAGGAGAGGACCAAGTATGAGAGTTCGGGTTATGGGAAGACTGAGTTTGAGAGACCTGGTTATGGCGAAGAGCCGCGGAGGAGGCCTAGTTATGAGATCCCAGAAAGCGAGGAGAGGCCCAGCTATGGGAGGCCTGGCTACGGAGATGAGCCGCCGCCGCCAAGGCCCAGCTATGGGAGACCTGGCTACGGAGATGAGCCGCCACCGCCGAGGCCCAGCTATGGGAGGCCCAGTTATGAGGGGGAGGAAAGCGCGGAGTATGAGAAGCCCAGTTATGGGAGGAGCGAGGAGCAGGAGTACCGCAGGCCTGGTGGTTATGAGAGGCGCGGTGATGATGATGAAGCTGAGCGTCCTAAGTATGGTTCTCGTGAGGAAGGCTATAGTCGCAAGAAATATGGAAATGACAACTCGGATGAGGATGATGATGATGAGGAGAAAAAACGACGTCACCACAAGCACCACCACCGCAAGAGCTATGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

453

Amino Acids

51.1

Weight (kDa)

4.65

Isoelectric Point (pI)

61.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1318
Acc36I ACCTGC 1 cut(s) 137
AccB7I CCANNNNNTGG 1 cut(s) 839
AccBSI CCGCTC 1 cut(s) 172
AccII CGCG 3 cut(s) 946, 1124, 1197
AcoI YGGCCR 3 cut(s) 100, 520, 571
AcyI GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
AjnI CCWGG 7 cut(s) 289, 352, 802, 925, 1003, 1051, 1177
AluBI AGCT 9 cut(s) 17, 243, 755, 837, 993, 1041, 1089, 1214, 1344
AluI AGCT 9 cut(s) 17, 243, 755, 837, 993, 1041, 1089, 1214, 1344
Alw21I GWGCWC 2 cut(s) 109, 318
Alw26I GTCTC 8 cut(s) 119, 469, 533, 584, 635, 851, 916, 1042
Ama87I CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
ApeKI GCWGC 1 cut(s) 240
AspLEI GCGC 2 cut(s) 1124, 1197
AsuC2I CCSGG 5 cut(s) 250, 267, 429, 444, 750
AsuHPI GGTGA 2 cut(s) 1211, 1310
AsuII TTCGAA 1 cut(s) 741
AvaI CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
AvaII GGWCC 2 cut(s) 269, 879
BamHI GGATCC 1 cut(s) 380
BanII GRGCYC 2 cut(s) 201, 495
BauI CACGAG 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 914
Bbv12I GWGCWC 2 cut(s) 109, 318
BbvI GCAGC 1 cut(s) 252
BceAI ACGGC 4 cut(s) 49, 87, 100, 115
BciT130I CCWGG 7 cut(s) 291, 354, 804, 927, 1005, 1053, 1179
BciVI GTATCC 1 cut(s) 71
BcnI CCSGG 5 cut(s) 250, 267, 429, 444, 750
BcoDI GTCTC 8 cut(s) 119, 469, 533, 584, 635, 851, 916, 1042
BfaI CTAG 1 cut(s) 957
BfmI CTRYAG 1 cut(s) 1249
BfuAI ACCTGC 1 cut(s) 137
BfuI GTATCC 1 cut(s) 71
BglI GCCNNNNNGGC 1 cut(s) 1033
BisI GCNGC 8 cut(s) 173, 241, 821, 944, 1022, 1025, 1028, 1070
BlpI GCTNAGC 1 cut(s) 1215
BlsI GCNGC 8 cut(s) 174, 242, 822, 945, 1023, 1026, 1029, 1071
Bme18I GGWCC 2 cut(s) 269, 879
BmeT110I CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
BmiI GGNNCC 7 cut(s) 176, 271, 329, 347, 382, 696, 801
BmrI ACTGGG 4 cut(s) 489, 843, 1095, 1134
BmuI ACTGGG 4 cut(s) 489, 843, 1095, 1134
BoxI GACNNNNGTC 1 cut(s) 481
BpiI GAAGAC 1 cut(s) 914
BpmI CTGGAG 1 cut(s) 273
Bpu1102I GCTNAGC 1 cut(s) 1215
Bpu14I TTCGAA 1 cut(s) 741
BpuMI CCSGG 5 cut(s) 250, 267, 429, 444, 750
BsaHI GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
BsaI GGTCTC 5 cut(s) 119, 469, 851, 916, 1042
BsaJI CCNNGG 5 cut(s) 306, 428, 944, 1031, 1079
BsaXI ACNNNNNCTCC 8 cut(s) 835, 865, 943, 973, 1087, 1117, 1151, 1181
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 5 cut(s) 495, 530, 849, 1101, 1140
BseBI CCWGG 7 cut(s) 291, 354, 804, 927, 1005, 1053, 1179
BseDI CCNNGG 5 cut(s) 306, 428, 944, 1031, 1079
BseGI GGATG 3 cut(s) 127, 1288, 1294
BseMII CTCAG 6 cut(s) 186, 696, 726, 876, 903, 1206
BseNI ACTGG 5 cut(s) 495, 530, 849, 1101, 1140
BseRI GAGGAG 7 cut(s) 812, 887, 964, 995, 1165, 1172, 1316
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 252
BseYI CCCAGC 3 cut(s) 989, 1037, 1085
Bsh1236I CGCG 3 cut(s) 946, 1124, 1197
Bsh1285I CGRYCG 2 cut(s) 103, 625
BsiEI CGRYCG 2 cut(s) 103, 625
BsiHKAI GWGCWC 2 cut(s) 109, 318
BsiHKCI CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
BsiSI CCGG 6 cut(s) 250, 267, 335, 428, 444, 749
BsiWI CGTACG 1 cut(s) 66
BsmAI GTCTC 8 cut(s) 119, 469, 533, 584, 635, 851, 916, 1042
BsmBI CGTCTC 3 cut(s) 533, 584, 635
Bso31I GGTCTC 5 cut(s) 119, 469, 851, 916, 1042
BsoBI CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
Bsp119I TTCGAA 1 cut(s) 741
Bsp1286I GDGCHC 4 cut(s) 109, 201, 318, 495
Bsp143I GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
Bsp1720I GCTNAGC 1 cut(s) 1215
BspCNI CTCAG 6 cut(s) 187, 697, 727, 875, 904, 1207
BspFNI CGCG 3 cut(s) 946, 1124, 1197
BspLI GGNNCC 7 cut(s) 176, 271, 329, 347, 382, 696, 801
BspMI ACCTGC 1 cut(s) 137
BspQI GCTCTTC 1 cut(s) 933
BspT104I TTCGAA 1 cut(s) 741
BspTNI GGTCTC 5 cut(s) 119, 469, 851, 916, 1042
BsrBI CCGCTC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 5 cut(s) 495, 530, 849, 1101, 1140
BssAI RCCGGY 1 cut(s) 334
BssECI CCNNGG 5 cut(s) 306, 428, 944, 1031, 1079
BssMI GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
BssNI GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
BssSI CACGAG 1 cut(s) 1236
BssT1I CCWWGG 1 cut(s) 1031
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 7 cut(s) 291, 354, 804, 927, 1005, 1053, 1179
Bst4CI ACNGT 3 cut(s) 71, 458, 623
Bst6I CTCTTC 2 cut(s) 210, 933
BstACI GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
BstBI TTCGAA 1 cut(s) 741
BstC8I GCNNGC 1 cut(s) 1175
BstDEI CTNAG 7 cut(s) 195, 705, 735, 862, 912, 1215, 1224
BstDSI CCRYGG 1 cut(s) 944
BstF5I GGATG 3 cut(s) 127, 1288, 1294
BstFNI CGCG 3 cut(s) 946, 1124, 1197
BstHHI GCGC 2 cut(s) 1124, 1197
BstKTI GATC 9 cut(s) 58, 304, 383, 512, 563, 614, 665, 716, 969
BstMAI GTCTC 8 cut(s) 119, 469, 533, 584, 635, 851, 916, 1042
BstMBI GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
BstMCI CGRYCG 2 cut(s) 103, 625
BstMWI GCNNNNNNNGC 7 cut(s) 752, 829, 952, 1027, 1033, 1075, 1254
BstNI CCWGG 7 cut(s) 291, 354, 804, 927, 1005, 1053, 1179
BstPAI GACNNNNGTC 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 1249
BstUI CGCG 3 cut(s) 946, 1124, 1197
BstV1I GCAGC 1 cut(s) 252
BstV2I GAAGAC 1 cut(s) 914
BstX2I RGATCY 7 cut(s) 380, 509, 560, 611, 662, 713, 966
BstYI RGATCY 7 cut(s) 380, 509, 560, 611, 662, 713, 966
BstZI CGGCCG 1 cut(s) 100
BsuI GTATCC 1 cut(s) 71
BtgI CCRYGG 1 cut(s) 944
BtgZI GCGATG 2 cut(s) 39, 129
BtsCI GGATG 3 cut(s) 127, 1288, 1294
BtsIMutI CAGTG 1 cut(s) 537
BveI ACCTGC 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 1175
CfoI GCGC 2 cut(s) 1124, 1197
Cfr10I RCCGGY 1 cut(s) 334
Cfr42I CCGCGG 1 cut(s) 947
CseI GACGC 5 cut(s) 70, 550, 601, 652, 1208
CsiI ACCWGGT 1 cut(s) 925
CviAII CATG 2 cut(s) 404, 710
DdeI CTNAG 7 cut(s) 195, 705, 735, 862, 912, 1215, 1224
DpnI GATC 9 cut(s) 57, 303, 382, 511, 562, 613, 664, 715, 968
DpnII GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
EaeI YGGCCR 3 cut(s) 100, 520, 571
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 2 cut(s) 210, 933
EarI CTCTTC 2 cut(s) 210, 933
EciI GGCGGA 2 cut(s) 90, 372
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 1031
Eco147I AGGCCT 3 cut(s) 955, 1003, 1177
Eco24I GRGCYC 2 cut(s) 201, 495
Eco31I GGTCTC 5 cut(s) 119, 469, 851, 916, 1042
Eco47I GGWCC 2 cut(s) 269, 879
Eco52I CGGCCG 1 cut(s) 100
Eco88I CYCGRG 9 cut(s) 110, 305, 371, 551, 581, 602, 632, 653, 683
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 7 cut(s) 289, 352, 802, 925, 1003, 1051, 1177
EcoT14I CCWWGG 1 cut(s) 1031
EcoT38I GRGCYC 2 cut(s) 201, 495
ErhI CCWWGG 1 cut(s) 1031
Esp3I CGTCTC 3 cut(s) 533, 584, 635
FaeI CATG 2 cut(s) 407, 713
FatI CATG 2 cut(s) 403, 709
FauI CCCGC 1 cut(s) 280
FauNDI CATATG 1 cut(s) 208
Fnu4HI GCNGC 8 cut(s) 173, 241, 821, 944, 1022, 1025, 1028, 1070
FokI GGATG 3 cut(s) 134, 1295, 1301
FriOI GRGCYC 2 cut(s) 201, 495
Fsp4HI GCNGC 8 cut(s) 173, 241, 821, 944, 1022, 1025, 1028, 1070
FspBI CTAG 1 cut(s) 957
GlaI GCGC 2 cut(s) 1123, 1196
GluI GCNGC 8 cut(s) 173, 241, 821, 944, 1022, 1025, 1028, 1070
GsaI CCCAGC 3 cut(s) 993, 1041, 1089
GsuI CTGGAG 1 cut(s) 273
HapII CCGG 6 cut(s) 250, 267, 335, 428, 444, 749
HgaI GACGC 5 cut(s) 70, 550, 601, 652, 1208
HhaI GCGC 2 cut(s) 1124, 1197
Hin1I GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
Hin1II CATG 2 cut(s) 407, 713
Hin6I GCGC 2 cut(s) 1122, 1195
HinP1I GCGC 2 cut(s) 1122, 1195
HinfI GANTC 3 cut(s) 482, 701, 759
HpaII CCGG 6 cut(s) 250, 267, 335, 428, 444, 749
HphI GGTGA 2 cut(s) 1211, 1310
Hpy166II GTNNAC 3 cut(s) 37, 285, 535
Hpy188III TCNNGA 6 cut(s) 38, 110, 224, 305, 698, 1238
Hpy8I GTNNAC 3 cut(s) 37, 285, 535
Hpy99I CGWCG 5 cut(s) 50, 64, 121, 474, 1317
HpyAV CCTTC 2 cut(s) 159, 1238
HpyCH4III ACNGT 3 cut(s) 71, 458, 623
HpyCH4IV ACGT 1 cut(s) 1315
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 7 cut(s) 752, 829, 952, 1027, 1033, 1075, 1254
HpyF3I CTNAG 7 cut(s) 195, 705, 735, 862, 912, 1215, 1224
HpySE526I ACGT 1 cut(s) 1315
Hsp92I GRCGYC 5 cut(s) 62, 542, 593, 644, 1315
Hsp92II CATG 2 cut(s) 407, 713
HspAI GCGC 2 cut(s) 1122, 1195
KspI CCGCGG 1 cut(s) 947
Kzo9I GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
LguI GCTCTTC 1 cut(s) 933
LmnI GCTCC 5 cut(s) 700, 752, 799, 1152, 1159
Lsp1109I GCAGC 1 cut(s) 252
MabI ACCWGGT 1 cut(s) 925
MaeI CTAG 1 cut(s) 957
MaeII ACGT 1 cut(s) 1315
MaeIII GTNAC 1 cut(s) 1316
MalI GATC 9 cut(s) 57, 303, 382, 511, 562, 613, 664, 715, 968
MbiI CCGCTC 1 cut(s) 172
MboI GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
MboII GAAGA 3 cut(s) 227, 919, 950
MflI RGATCY 7 cut(s) 380, 509, 560, 611, 662, 713, 966
MhlI GDGCHC 4 cut(s) 109, 201, 318, 495
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 3 cut(s) 83, 99, 401
MspA1I CMGCKG 2 cut(s) 17, 946
MspI CCGG 6 cut(s) 250, 267, 335, 428, 444, 749
MvaI CCWGG 7 cut(s) 291, 354, 804, 927, 1005, 1053, 1179
MvnI CGCG 3 cut(s) 946, 1124, 1197
MwoI GCNNNNNNNGC 7 cut(s) 752, 829, 952, 1027, 1033, 1075, 1254
NciI CCSGG 5 cut(s) 250, 267, 429, 444, 750
NdeI CATATG 1 cut(s) 208
NdeII GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
NlaIII CATG 2 cut(s) 407, 713
NlaIV GGNNCC 7 cut(s) 176, 271, 329, 347, 382, 696, 801
NmeAIII GCCGAG 3 cut(s) 810, 849, 1104
NmuCI GTSAC 1 cut(s) 1316
NspV TTCGAA 1 cut(s) 741
PaeR7I CTCGAG 1 cut(s) 110
PceI AGGCCT 3 cut(s) 955, 1003, 1177
PciSI GCTCTTC 1 cut(s) 933
PcsI WCGNNNNNNNCGW 5 cut(s) 27, 36, 45, 51, 696
PfeI GAWTC 2 cut(s) 701, 759
Pfl23II CGTACG 1 cut(s) 66
PflMI CCANNNNNTGG 1 cut(s) 839
PkrI GCNGC 8 cut(s) 174, 242, 822, 945, 1023, 1026, 1029, 1071
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
PshAI GACNNNNGTC 1 cut(s) 481
Psp6I CCWGG 7 cut(s) 289, 352, 802, 925, 1003, 1051, 1177
PspFI CCCAGC 3 cut(s) 989, 1037, 1085
PspGI CCWGG 7 cut(s) 289, 352, 802, 925, 1003, 1051, 1177
PspLI CGTACG 1 cut(s) 66
PspN4I GGNNCC 7 cut(s) 176, 271, 329, 347, 382, 696, 801
PsuI RGATCY 7 cut(s) 380, 509, 560, 611, 662, 713, 966
PvuII CAGCTG 1 cut(s) 17
SacII CCGCGG 1 cut(s) 947
SapI GCTCTTC 1 cut(s) 933
SatI GCNGC 8 cut(s) 173, 241, 821, 944, 1022, 1025, 1028, 1070
Sau3AI GATC 9 cut(s) 55, 301, 380, 509, 560, 611, 662, 713, 966
SchI GAGTC 1 cut(s) 491
SduI GDGCHC 4 cut(s) 109, 201, 318, 495
SexAI ACCWGGT 1 cut(s) 925
SfcI CTRYAG 1 cut(s) 1249
Sfr274I CTCGAG 1 cut(s) 110
Sfr303I CCGCGG 1 cut(s) 947
SfuI TTCGAA 1 cut(s) 741
SgrBI CCGCGG 1 cut(s) 947
SinI GGWCC 2 cut(s) 269, 879
SlaI CTCGAG 1 cut(s) 110
SmlI CTYRAG 1 cut(s) 110
SmoI CTYRAG 1 cut(s) 110
Sse9I AATT 1 cut(s) 179
SseBI AGGCCT 3 cut(s) 955, 1003, 1177
SspMI CTAG 1 cut(s) 957
StuI AGGCCT 3 cut(s) 955, 1003, 1177
StyI CCWWGG 1 cut(s) 1031
TaaI ACNGT 3 cut(s) 71, 458, 623
TaiI ACGT 1 cut(s) 1318
TaqI TCGA 7 cut(s) 45, 111, 162, 225, 469, 625, 741
TasI AATT 1 cut(s) 179
TatI WGTACW 1 cut(s) 234
TauI GCSGC 7 cut(s) 175, 823, 946, 1024, 1027, 1030, 1072
TfiI GAWTC 2 cut(s) 701, 759
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 1316
TseI GCWGC 1 cut(s) 240
Tsp45I GTSAC 1 cut(s) 1316
TspDTI ATGAA 4 cut(s) 174, 450, 789, 1224
TspGWI ACGGA 5 cut(s) 333, 487, 793, 1026, 1074
TspRI CASTG 1 cut(s) 537
Van91I CCANNNNNTGG 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 269, 879
XcmI CCANNNNNNNNNTGG 1 cut(s) 338
XhoI CTCGAG 1 cut(s) 110
XspI CTAG 1 cut(s) 957
ZraI GACGTC 1 cut(s) 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.