Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

77241828 .. 77257292

Gene Structure 15465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGACACGTTACTACACATACTATACAAACAACCAGAATGGGGCGGACGACTTCAATGAGTGCGATCCAACACCGTATGAAGGTGGATACGACATAGGATTGATTTACGGACGTCCTCTGCCGCCATCGGAGGAGATATGTTATCGCCGCTCGTCGTCTCCGGCAAAGGATAACAACTACGACTCGCCGGAGTTCAAATCATCTGAGCCAAATGCGTATGACGAGAAGAAGTCGGAGTCCGAATACAGCAGTTACATACGACAGTCGTCACATAAGGAAAACAATGAAAATCCAGATTTGAAACAAAATCAACAGCAACCAAAACCACAAGAAGAGCAACGACAGAGGTCTAGTGAATCTTCCAGGGAGGAAGAGCCTACTCTGGCCGGTGAAGGAGGCTACGGTGGTCGCAATAAATATGGATCCAGGCCCAGTAGGCCTCAGTATGGATCCGAGGAGCCCGGATCGGAGTATGGATCCGGTTACGGGCGGAAACCCGAGGCCGATCAGCCCAGTTCCGAGTACGGGTCGGGTTACGGTCGGAAGCCGGAGTACAAAGCGCCTGAATCGGAGTATGGATCGGGTTACGGGCGAAAACCCGAGTACGAGGCGCCGGAATCGGAGTATGGGGCGGGTTATGGCAGGAAACCCGATTACGAAGCGCCGGTCGGGTCGGGTTATGGCCGGAAGCCAAGTTATGGTGAGCATGAGAGTGGTGGATACGGCGATGAGCCGCCGAGGCGGAAGCCGAGCTATGGTGAGGAGAAACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCGCCGAGGAGACCTGGGTTTGGAAGGCCTGGTGGTTATGGTGGGGAGGAGAGTGAAGAGAGGCCCAGTTATGGGAGGAGTGAGTTTCAGGAGCCTGGTTATGGTGATGAGCCGCCGAGGAAGCCCAGCTATGGTGGTAGGACTAGTTATGATACCCCGGAAACTGACGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAAACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCGAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGTAGTGATGATGAGGATTCTCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCTGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

463

Amino Acids

52.7

Weight (kDa)

4.85

Isoelectric Point (pI)

69.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AccB1I	GGYRCC	1 cut(s)	610
AccB7I	CCANNNNNTGG	1 cut(s)	698
AccBSI	CCGCTC	1 cut(s)	150
AclWI	GGATC	9 cut(s)	59, 417, 430, 444, 457, 471, 472, 484, 586
AcoI	YGGCCR	3 cut(s)	384, 682, 1297
AcyI	GRCGYC	2 cut(s)	112, 611
AfaI	GTAC	4 cut(s)	524, 554, 605, 1175
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	55, 196, 301
AhlI	ACTAGT	1 cut(s)	944
AjnI	CCWGG	5 cut(s)	362, 425, 814, 829, 895
Alw26I	GTCTC	7 cut(s)	162, 805, 1001, 1010, 1055, 1109, 1118
AlwI	GGATC	9 cut(s)	59, 417, 430, 444, 457, 471, 472, 484, 586
Ama87I	CYCGRG	3 cut(s)	497, 599, 770
ApeKI	GCWGC	1 cut(s)	1348
ArsI	GACNNNNNNTTYG	2 cut(s)	651, 683
AspLEI	GCGC	3 cut(s)	562, 613, 664
AspS9I	GGNCC	2 cut(s)	429, 864
AsuC2I	CCSGG	5 cut(s)	462, 959, 1013, 1067, 1121
AsuHPI	GGTGA	5 cut(s)	401, 713, 770, 917, 1295
AvaI	CYCGRG	3 cut(s)	497, 599, 770
BamHI	GGATCC	3 cut(s)	422, 449, 476
BanI	GGYRCC	1 cut(s)	610
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	536, 568
BbvI	GCAGC	1 cut(s)	1360
BccI	CCATC	2 cut(s)	133, 1374
BceAI	ACGGC	1 cut(s)	739
BciT130I	CCWGG	5 cut(s)	364, 427, 816, 831, 897
BciVI	GTATCC	2 cut(s)	80, 713
BcnI	CCSGG	5 cut(s)	462, 959, 1013, 1067, 1121
BcoDI	GTCTC	7 cut(s)	162, 805, 1001, 1010, 1055, 1109, 1118
BcuI	ACTAGT	1 cut(s)	944
BfaI	CTAG	3 cut(s)	351, 945, 1191
BfoI	RGCGCY	3 cut(s)	563, 614, 665
BfuI	GTATCC	2 cut(s)	80, 713
BglI	GCCNNNNNGGC	2 cut(s)	436, 739
BisI	GCNGC	6 cut(s)	122, 148, 734, 914, 1300, 1349
BlsI	GCNGC	6 cut(s)	123, 149, 735, 915, 1301, 1350
BmeT110I	CYCGRG	3 cut(s)	497, 599, 770
BmgT120I	GGNCC	2 cut(s)	429, 864
BmiI	GGNNCC	6 cut(s)	424, 451, 459, 478, 612, 894
BmrI	ACTGGG	4 cut(s)	426, 507, 861, 1140
BmuI	ACTGGG	4 cut(s)	426, 507, 861, 1140
BoxI	GACNNNNGTC	2 cut(s)	265, 346
BpuMI	CCSGG	5 cut(s)	462, 959, 1013, 1067, 1121
BsaHI	GRCGYC	2 cut(s)	112, 611
BsaI	GGTCTC	4 cut(s)	805, 1001, 1055, 1109
BsaWI	WCCGGW	1 cut(s)	479
BsaXI	ACNNNNNCTCC	4 cut(s)	1157, 1187, 1192, 1222
Bse118I	RCCGGY	2 cut(s)	386, 664
Bse1I	ACTGG	4 cut(s)	432, 513, 867, 1146
BseBI	CCWGG	5 cut(s)	364, 427, 816, 831, 897
BseGI	GGATG	1 cut(s)	802
BseMII	CTCAG	8 cut(s)	195, 455, 1011, 1065, 1119, 1152, 1215, 1277
BseNI	ACTGG	4 cut(s)	432, 513, 867, 1146
BseXI	GCAGC	1 cut(s)	1360
BseYI	CCCAGC	4 cut(s)	926, 983, 1037, 1091
Bsh1285I	CGRYCG	2 cut(s)	541, 669
BshNI	GGYRCC	1 cut(s)	610
BsiEI	CGRYCG	2 cut(s)	541, 669
BsiHKCI	CYCGRG	3 cut(s)	497, 599, 770
BsmAI	GTCTC	7 cut(s)	162, 805, 1001, 1010, 1055, 1109, 1118
BsmBI	CGTCTC	1 cut(s)	162
Bso31I	GGTCTC	4 cut(s)	805, 1001, 1055, 1109
BsoBI	CYCGRG	3 cut(s)	497, 599, 770
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
BspCNI	CTCAG	8 cut(s)	196, 454, 1012, 1066, 1120, 1153, 1216, 1276
BspLI	GGNNCC	6 cut(s)	424, 451, 459, 478, 612, 894
BspPI	GGATC	9 cut(s)	59, 417, 430, 444, 457, 471, 472, 484, 586
BspQI	GCTCTTC	2 cut(s)	327, 366
BspT107I	GGYRCC	1 cut(s)	610
BspTNI	GGTCTC	4 cut(s)	805, 1001, 1055, 1109
BsrBI	CCGCTC	1 cut(s)	150
BsrFI	RCCGGY	2 cut(s)	386, 664
BsrI	ACTGG	4 cut(s)	432, 513, 867, 1146
BssAI	RCCGGY	2 cut(s)	386, 664
BssMI	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
BssNI	GRCGYC	2 cut(s)	112, 611
Bst2UI	CCWGG	5 cut(s)	364, 427, 816, 831, 897
Bst4CI	ACNGT	4 cut(s)	75, 264, 404, 539
Bst6I	CTCTTC	4 cut(s)	327, 366, 852, 1281
BstACI	GRCGYC	2 cut(s)	112, 611
BstC8I	GCNNGC	4 cut(s)	995, 1049, 1103, 1181
BstDEI	CTNAG	8 cut(s)	204, 441, 1020, 1074, 1128, 1161, 1224, 1263
BstF5I	GGATG	1 cut(s)	802
BstH2I	RGCGCY	3 cut(s)	563, 614, 665
BstHHI	GCGC	3 cut(s)	562, 613, 664
BstKTI	GATC	7 cut(s)	67, 425, 452, 467, 479, 508, 581
BstMAI	GTCTC	7 cut(s)	162, 805, 1001, 1010, 1055, 1109, 1118
BstMBI	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
BstMCI	CGRYCG	2 cut(s)	541, 669
BstMWI	GCNNNNNNNGC	7 cut(s)	436, 739, 922, 999, 1053, 1107, 1299
BstNI	CCWGG	5 cut(s)	364, 427, 816, 831, 897
BstPAI	GACNNNNGTC	2 cut(s)	265, 346
BstV1I	GCAGC	1 cut(s)	1360
BstX2I	RGATCY	3 cut(s)	422, 449, 476
BstYI	RGATCY	3 cut(s)	422, 449, 476
BsuI	GTATCC	2 cut(s)	80, 713
BtgZI	GCGATG	2 cut(s)	741, 1352
BtsCI	GGATG	1 cut(s)	802
Cac8I	GCNNGC	4 cut(s)	995, 1049, 1103, 1181
CfoI	GCGC	3 cut(s)	562, 613, 664
Cfr10I	RCCGGY	2 cut(s)	386, 664
Cfr13I	GGNCC	2 cut(s)	429, 864
CseI	GACGC	2 cut(s)	1217, 1340
Csp6I	GTAC	4 cut(s)	523, 553, 604, 1174
CviAII	CATG	1 cut(s)	707
CviQI	GTAC	4 cut(s)	523, 553, 604, 1174
DdeI	CTNAG	8 cut(s)	204, 441, 1020, 1074, 1128, 1161, 1224, 1263
DinI	GGCGCC	1 cut(s)	612
DpnI	GATC	7 cut(s)	66, 424, 451, 466, 478, 507, 580
DpnII	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
EaeI	YGGCCR	3 cut(s)	384, 682, 1297
Eam1104I	CTCTTC	4 cut(s)	327, 366, 852, 1281
EarI	CTCTTC	4 cut(s)	327, 366, 852, 1281
EciI	GGCGGA	3 cut(s)	59, 505, 757
Eco147I	AGGCCT	2 cut(s)	439, 829
Eco24I	GRGCYC	1 cut(s)	462
Eco31I	GGTCTC	4 cut(s)	805, 1001, 1055, 1109
Eco88I	CYCGRG	3 cut(s)	497, 599, 770
EcoRII	CCWGG	5 cut(s)	362, 425, 814, 829, 895
EcoT38I	GRGCYC	1 cut(s)	462
EgeI	GGCGCC	1 cut(s)	612
EheI	GGCGCC	1 cut(s)	612
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	710
FatI	CATG	1 cut(s)	706
FauI	CCCGC	1 cut(s)	625
Fnu4HI	GCNGC	6 cut(s)	122, 148, 734, 914, 1300, 1349
FokI	GGATG	1 cut(s)	809
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	6 cut(s)	122, 148, 734, 914, 1300, 1349
FspBI	CTAG	3 cut(s)	351, 945, 1191
GlaI	GCGC	3 cut(s)	561, 612, 663
GluI	GCNGC	6 cut(s)	122, 148, 734, 914, 1300, 1349
GsaI	CCCAGC	4 cut(s)	930, 987, 1041, 1095
HaeII	RGCGCY	3 cut(s)	563, 614, 665
HgaI	GACGC	2 cut(s)	1217, 1340
HhaI	GCGC	3 cut(s)	562, 613, 664
Hin1I	GRCGYC	2 cut(s)	112, 611
Hin1II	CATG	1 cut(s)	710
Hin6I	GCGC	3 cut(s)	560, 611, 662
HinP1I	GCGC	3 cut(s)	560, 611, 662
HinfI	GANTC	8 cut(s)	182, 236, 356, 566, 617, 1220, 1259, 1322
HphI	GGTGA	5 cut(s)	401, 713, 770, 917, 1295
Hpy188III	TCNNGA	2 cut(s)	293, 890
Hpy99I	CGWCG	4 cut(s)	157, 1233, 1275, 1356
HpyAV	CCTTC	3 cut(s)	74, 386, 819
HpyCH4III	ACNGT	4 cut(s)	75, 264, 404, 539
HpyCH4IV	ACGT	2 cut(s)	7, 112
HpyF10VI	GCNNNNNNNGC	7 cut(s)	436, 739, 922, 999, 1053, 1107, 1299
HpyF3I	CTNAG	8 cut(s)	204, 441, 1020, 1074, 1128, 1161, 1224, 1263
HpySE526I	ACGT	2 cut(s)	7, 112
Hsp92I	GRCGYC	2 cut(s)	112, 611
Hsp92II	CATG	1 cut(s)	710
HspAI	GCGC	3 cut(s)	560, 611, 662
KasI	GGCGCC	1 cut(s)	610
Kzo9I	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
LguI	GCTCTTC	2 cut(s)	327, 366
LmnI	GCTCC	3 cut(s)	457, 892, 1165
Lsp1109I	GCAGC	1 cut(s)	1360
MaeI	CTAG	3 cut(s)	351, 945, 1191
MaeII	ACGT	2 cut(s)	7, 112
MaeIII	GTNAC	6 cut(s)	8, 251, 267, 482, 533, 584
MalI	GATC	7 cut(s)	66, 424, 451, 466, 478, 507, 580
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
MboII	GAAGA	6 cut(s)	238, 344, 351, 383, 869, 1298
MflI	RGATCY	3 cut(s)	422, 449, 476
MhlI	GDGCHC	1 cut(s)	462
Mly113I	GGCGCC	1 cut(s)	611
MlyI	GAGTC	3 cut(s)	176, 245, 1316
MmeI	TCCRAC	3 cut(s)	92, 213, 521
MslI	CAYNNNNRTG	1 cut(s)	711
MvaI	CCWGG	5 cut(s)	364, 427, 816, 831, 897
MwoI	GCNNNNNNNGC	7 cut(s)	436, 739, 922, 999, 1053, 1107, 1299
NarI	GGCGCC	1 cut(s)	611
NciI	CCSGG	5 cut(s)	462, 959, 1013, 1067, 1121
NdeII	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
NlaIII	CATG	1 cut(s)	710
NlaIV	GGNNCC	6 cut(s)	424, 451, 459, 478, 612, 894
NmeAIII	GCCGAG	4 cut(s)	762, 774, 831, 942
NmuCI	GTSAC	1 cut(s)	267
PceI	AGGCCT	2 cut(s)	439, 829
PciSI	GCTCTTC	2 cut(s)	327, 366
PcsI	WCGNNNNNNNCGW	1 cut(s)	1237
PfeI	GAWTC	5 cut(s)	356, 566, 617, 1220, 1259
PflMI	CCANNNNNTGG	1 cut(s)	698
PkrI	GCNGC	6 cut(s)	123, 149, 735, 915, 1301, 1350
PleI	GAGTC	3 cut(s)	176, 244, 1316
PluTI	GGCGCC	1 cut(s)	614
PpsI	GAGTC	3 cut(s)	176, 244, 1316
PshAI	GACNNNNGTC	2 cut(s)	265, 346
Psp6I	CCWGG	5 cut(s)	362, 425, 814, 829, 895
PspFI	CCCAGC	4 cut(s)	926, 983, 1037, 1091
PspGI	CCWGG	5 cut(s)	362, 425, 814, 829, 895
PspN4I	GGNNCC	6 cut(s)	424, 451, 459, 478, 612, 894
PspPI	GGNCC	2 cut(s)	429, 864
PsuI	RGATCY	3 cut(s)	422, 449, 476
RsaI	GTAC	4 cut(s)	524, 554, 605, 1175
RsaNI	GTAC	4 cut(s)	523, 553, 604, 1174
RseI	CAYNNNNRTG	1 cut(s)	711
SapI	GCTCTTC	2 cut(s)	327, 366
SatI	GCNGC	6 cut(s)	122, 148, 734, 914, 1300, 1349
Sau3AI	GATC	7 cut(s)	64, 422, 449, 464, 476, 505, 578
Sau96I	GGNCC	2 cut(s)	429, 864
SchI	GAGTC	3 cut(s)	176, 245, 1316
SduI	GDGCHC	1 cut(s)	462
SfiI	GGCCNNNNNGGCC	1 cut(s)	436
SfoI	GGCGCC	1 cut(s)	612
SmiMI	CAYNNNNRTG	1 cut(s)	711
SpeI	ACTAGT	1 cut(s)	944
SseBI	AGGCCT	2 cut(s)	439, 829
SspDI	GGCGCC	1 cut(s)	610
SspMI	CTAG	3 cut(s)	351, 945, 1191
StuI	AGGCCT	2 cut(s)	439, 829
TaaI	ACNGT	4 cut(s)	75, 264, 404, 539
TaiI	ACGT	2 cut(s)	10, 115
TatI	WGTACW	1 cut(s)	552
TauI	GCSGC	5 cut(s)	124, 150, 736, 916, 1302
TfiI	GAWTC	5 cut(s)	356, 566, 617, 1220, 1259
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	1348
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	93, 300, 813
TspGWI	ACGGA	1 cut(s)	123
Van91I	CCANNNNNTGG	1 cut(s)	698
XspI	CTAG	3 cut(s)	351, 945, 1191
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.