Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

24846529 .. 24847496

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G263700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGACGCGCTACTACACGTACTACACAGGGAACGACGCCAACGAAGACAGCGCGGACGTGTTCGAGGAGTATGATCCGACGCCGTACGAGGGCGGGTACGATATGGCACTGACCTACGGCCGCCCTGTGGCCCCATCTGAGAGGACGTGCTACCGTCACTCCTCGGGAGAGGACCCCGAGGAGGACTATGATCAGCCCGAGTTCTCATCGTACCAGGAGCCGTCCGCGTACGACGAGGAGGCCGTGAAAGAGGAGTATAGTAGCTACGCCCGGCCTTCGCAAGAGGGAGATCAATACAATATTCGGAGGCAGGGCCGCGGCGAAGGGAGGAGAAGCGATTCTTATGACGATGAGGAGCCCACTCCGGCAGGAGAAGGGGGATACGGTCGCAAGAAATACGCTACCTCGCCTGGAGGCACTAGATCATCTTGGTGGCCCGGATGTTGCACCAGCGAACAAGCAATTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

157

Amino Acids

17.74

Weight (kDa)

4.27

Isoelectric Point (pI)

82.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	7, 53, 227, 318
AciI	CCGC	6 cut(s)	53, 93, 121, 225, 316, 318
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	118
AcyI	GRCGYC	2 cut(s)	36, 80
AfaI	GTAC	5 cut(s)	20, 86, 98, 212, 230
AfiI	CCNNNNNNNGG	3 cut(s)	89, 127, 181
AflIII	ACRYGT	2 cut(s)	15, 57
AjiI	CACGTC	2 cut(s)	58, 147
AjnI	CCWGG	2 cut(s)	213, 409
AluBI	AGCT	1 cut(s)	264
AluI	AGCT	1 cut(s)	264
AlwI	GGATC	1 cut(s)	68
Ama87I	CYCGRG	3 cut(s)	163, 176, 197
AoxI	GGCC	6 cut(s)	118, 129, 240, 272, 313, 434
Asp700I	GAANNNNTTC	1 cut(s)	337
AspLEI	GCGC	2 cut(s)	9, 53
AspS9I	GGNCC	4 cut(s)	130, 172, 313, 435
AsuC2I	CCSGG	2 cut(s)	271, 438
AvaI	CYCGRG	3 cut(s)	163, 176, 197
AvaII	GGWCC	1 cut(s)	172
BanII	GRGCYC	1 cut(s)	360
BbsI	GAAGAC	1 cut(s)	51
BccI	CCATC	1 cut(s)	142
BceAI	ACGGC	4 cut(s)	67, 133, 205, 227
BciT130I	CCWGG	2 cut(s)	215, 411
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	2 cut(s)	271, 438
BfaI	CTAG	1 cut(s)	420
BfuI	GTATCC	1 cut(s)	374
BisI	GCNGC	3 cut(s)	121, 316, 319
BlsI	GCNGC	3 cut(s)	122, 317, 320
Bme1390I	CCNGG	4 cut(s)	215, 271, 411, 438
Bme18I	GGWCC	1 cut(s)	172
BmeT110I	CYCGRG	3 cut(s)	163, 176, 197
BmgBI	CACGTC	2 cut(s)	58, 147
BmgT120I	GGNCC	4 cut(s)	130, 172, 313, 435
BmiI	GGNNCC	4 cut(s)	132, 174, 219, 357
BmrFI	CCNGG	4 cut(s)	215, 271, 411, 438
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	271, 438
BsaAI	YACGTR	1 cut(s)	18
BsaHI	GRCGYC	2 cut(s)	36, 80
BsaJI	CCNNGG	3 cut(s)	162, 177, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	143, 173
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 127, 181
BseBI	CCWGG	2 cut(s)	215, 411
BseDI	CCNNGG	3 cut(s)	162, 177, 316
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	3 cut(s)	89, 127, 181
BseMII	CTCAG	1 cut(s)	129
BseRI	GAGGAG	7 cut(s)	80, 151, 194, 251, 266, 343, 368
BseX3I	CGGCCG	1 cut(s)	118
Bsh1236I	CGCG	4 cut(s)	7, 53, 227, 318
Bsh1285I	CGRYCG	2 cut(s)	121, 388
BshFI	GGCC	6 cut(s)	120, 131, 242, 274, 315, 436
BsiEI	CGRYCG	2 cut(s)	121, 388
BsiHKCI	CYCGRG	3 cut(s)	163, 176, 197
BsiSI	CCGG	3 cut(s)	271, 365, 438
BsiWI	CGTACG	2 cut(s)	84, 228
BslI	CCNNNNNNNGG	3 cut(s)	89, 127, 181
BsnI	GGCC	6 cut(s)	120, 131, 242, 274, 315, 436
BsoBI	CYCGRG	3 cut(s)	163, 176, 197
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	4 cut(s)	73, 190, 289, 422
BspACI	CCGC	6 cut(s)	53, 93, 121, 225, 316, 318
BspANI	GGCC	6 cut(s)	120, 131, 242, 274, 315, 436
BspCNI	CTCAG	1 cut(s)	130
BspFNI	CGCG	4 cut(s)	7, 53, 227, 318
BspLI	GGNNCC	4 cut(s)	132, 174, 219, 357
BspPI	GGATC	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	162, 177, 316
BssMI	GATC	4 cut(s)	73, 190, 289, 422
BssNI	GRCGYC	2 cut(s)	36, 80
Bst2UI	CCWGG	2 cut(s)	215, 411
Bst4CI	ACNGT	2 cut(s)	155, 386
BstACI	GRCGYC	2 cut(s)	36, 80
BstBAI	YACGTR	1 cut(s)	18
BstDEI	CTNAG	1 cut(s)	138
BstDSI	CCRYGG	1 cut(s)	316
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	4 cut(s)	7, 53, 227, 318
BstHHI	GCGC	2 cut(s)	9, 53
BstKTI	GATC	4 cut(s)	76, 193, 292, 425
BstMBI	GATC	4 cut(s)	73, 190, 289, 422
BstMCI	CGRYCG	2 cut(s)	121, 388
BstNI	CCWGG	2 cut(s)	215, 411
BstSCI	CCNGG	4 cut(s)	213, 269, 409, 436
BstUI	CGCG	4 cut(s)	7, 53, 227, 318
BstV2I	GAAGAC	1 cut(s)	51
BstZI	CGGCCG	1 cut(s)	118
BsuI	GTATCC	1 cut(s)	374
BsuRI	GGCC	6 cut(s)	120, 131, 242, 274, 315, 436
BtgI	CCRYGG	1 cut(s)	316
BtrI	CACGTC	2 cut(s)	58, 147
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	1 cut(s)	107
CfoI	GCGC	2 cut(s)	9, 53
Cfr13I	GGNCC	4 cut(s)	130, 172, 313, 435
Cfr42I	CCGCGG	1 cut(s)	319
CseI	GACGC	3 cut(s)	13, 44, 88
Csp6I	GTAC	5 cut(s)	19, 85, 97, 211, 229
CviQI	GTAC	5 cut(s)	19, 85, 97, 211, 229
DdeI	CTNAG	1 cut(s)	138
DpnI	GATC	4 cut(s)	75, 192, 291, 424
DpnII	GATC	4 cut(s)	73, 190, 289, 422
EaeI	YGGCCR	1 cut(s)	118
EagI	CGGCCG	1 cut(s)	118
EclXI	CGGCCG	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	360
Eco47I	GGWCC	1 cut(s)	172
Eco52I	CGGCCG	1 cut(s)	118
Eco88I	CYCGRG	3 cut(s)	163, 176, 197
EcoO109I	RGGNCCY	1 cut(s)	172
EcoRII	CCWGG	2 cut(s)	213, 409
EcoT38I	GRGCYC	1 cut(s)	360
FaiI	YATR	5 cut(s)	72, 104, 189, 258, 345
FalI	AAGNNNNNCTT	2 cut(s)	325, 357
FauI	CCCGC	1 cut(s)	86
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	121, 316, 319
FokI	GGATG	1 cut(s)	453
FriOI	GRGCYC	1 cut(s)	360
Fsp4HI	GCNGC	3 cut(s)	121, 316, 319
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	2 cut(s)	8, 52
GluI	GCNGC	3 cut(s)	121, 316, 319
GsuI	CTGGAG	1 cut(s)	432
HaeIII	GGCC	6 cut(s)	120, 131, 242, 274, 315, 436
HapII	CCGG	3 cut(s)	271, 365, 438
HgaI	GACGC	3 cut(s)	13, 44, 88
HhaI	GCGC	2 cut(s)	9, 53
Hin1I	GRCGYC	2 cut(s)	36, 80
Hin6I	GCGC	2 cut(s)	7, 51
HinP1I	GCGC	2 cut(s)	7, 51
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	3 cut(s)	271, 365, 438
Hpy188I	TCNGA	3 cut(s)	78, 139, 306
Hpy188III	TCNNGA	1 cut(s)	165
Hpy99I	CGWCG	3 cut(s)	38, 82, 236
HpyAV	CCTTC	3 cut(s)	285, 317, 368
HpyCH4III	ACNGT	2 cut(s)	155, 386
HpyCH4IV	ACGT	3 cut(s)	17, 57, 146
HpyCH4V	TGCA	1 cut(s)	447
HpyF3I	CTNAG	1 cut(s)	138
HpySE526I	ACGT	3 cut(s)	17, 57, 146
Hsp92I	GRCGYC	2 cut(s)	36, 80
HspAI	GCGC	2 cut(s)	7, 51
Ksp22I	TGATCA	1 cut(s)	190
KspI	CCGCGG	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	73, 190, 289, 422
LmnI	GCTCC	2 cut(s)	217, 355
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	3 cut(s)	17, 57, 146
MaeIII	GTNAC	1 cut(s)	155
MalI	GATC	4 cut(s)	75, 192, 291, 424
MboI	GATC	4 cut(s)	73, 190, 289, 422
MboII	GAAGA	1 cut(s)	56
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	1 cut(s)	462
MmeI	TCCRAC	1 cut(s)	101
MroXI	GAANNNNTTC	1 cut(s)	337
MslI	CAYNNNNRTG	1 cut(s)	430
MspA1I	CMGCKG	1 cut(s)	318
MspI	CCGG	3 cut(s)	271, 365, 438
MspR9I	CCNGG	4 cut(s)	215, 271, 411, 438
MvaI	CCWGG	2 cut(s)	215, 411
MvnI	CGCG	4 cut(s)	7, 53, 227, 318
NciI	CCSGG	2 cut(s)	271, 438
NdeII	GATC	4 cut(s)	73, 190, 289, 422
NlaIV	GGNNCC	4 cut(s)	132, 174, 219, 357
NmuCI	GTSAC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	2 cut(s)	39, 240
PdmI	GAANNNNTTC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	338
Pfl23II	CGTACG	2 cut(s)	84, 228
PkrI	GCNGC	3 cut(s)	122, 317, 320
Ppu21I	YACGTR	1 cut(s)	18
PpuMI	RGGWCCY	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	213, 409
PspGI	CCWGG	2 cut(s)	213, 409
PspLI	CGTACG	2 cut(s)	84, 228
PspN4I	GGNNCC	4 cut(s)	132, 174, 219, 357
PspPI	GGNCC	4 cut(s)	130, 172, 313, 435
PspPPI	RGGWCCY	1 cut(s)	172
RsaI	GTAC	5 cut(s)	20, 86, 98, 212, 230
RsaNI	GTAC	5 cut(s)	19, 85, 97, 211, 229
RseI	CAYNNNNRTG	1 cut(s)	430
SacII	CCGCGG	1 cut(s)	319
SatI	GCNGC	3 cut(s)	121, 316, 319
Sau3AI	GATC	4 cut(s)	73, 190, 289, 422
Sau96I	GGNCC	4 cut(s)	130, 172, 313, 435
ScrFI	CCNGG	4 cut(s)	215, 271, 411, 438
SduI	GDGCHC	1 cut(s)	360
SetI	ASST	6 cut(s)	20, 60, 116, 149, 266, 407
Sfr303I	CCGCGG	1 cut(s)	319
SgrBI	CCGCGG	1 cut(s)	319
SinI	GGWCC	1 cut(s)	172
SmiMI	CAYNNNNRTG	1 cut(s)	430
Sse9I	AATT	1 cut(s)	462
SsiI	CCGC	6 cut(s)	53, 93, 121, 225, 316, 318
SspI	AATATT	1 cut(s)	301
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	4 cut(s)	213, 269, 409, 436
TaaI	ACNGT	2 cut(s)	155, 386
TaiI	ACGT	3 cut(s)	20, 60, 149
TaqI	TCGA	1 cut(s)	63
TasI	AATT	1 cut(s)	462
TauI	GCSGC	3 cut(s)	123, 318, 321
TfiI	GAWTC	1 cut(s)	338
TscAI	CASTG	1 cut(s)	114
TseFI	GTSAC	1 cut(s)	155
Tsp45I	GTSAC	1 cut(s)	155
TspRI	CASTG	1 cut(s)	114
VpaK11BI	GGWCC	1 cut(s)	172
XmnI	GAANNNNTTC	1 cut(s)	337
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.