Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Forward (+)

77405557 .. 77406176

Gene Structure 620 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACACGTTACTACACATACTATACAAACAACCAGAATGGGCCGGACGACTTCAATGAGTGCGATCCAACACCGTATGAAGGTGGATACGACATGGGATTGATTTACGGACGTCCTCTGCCGCCATCGGAGGAGATATGTTATCATCACTCGTCGTCTCCGGCAAAGGATAACAAGTACGACTCGCCGGAGTTCAAATCATCTGAGCCAAATGCGTATGACAAGAAGAAGTCGGAATCCGAATACAGCAGTTACATACCACAGTCGTCACATAAGGAAAACAATGAAAATCCAGATTTGAAACAAAATCAACAGCAACCAAAACCACAAGAAGAGCAACGACAGAGGTCTAGTGAATCTTCCAGGGAGGAAGAGCCTACTCTGGCAGGTGAAGGAGGCTATGGTGGTCGCAAGAAAGGTCGTGTTGTAGCAGCAACGGCGCAATTCAATGACGGACGTCTGCCGGAATGTCTTTGCACCGTTCTTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008289 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0070300 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

164

Amino Acids

18.54

Weight (kDa)

5.05

Isoelectric Point (pI)

80.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	377
AatII	GACGTC	2 cut(s)	115, 460
Acc36I	ACCTGC	1 cut(s)	377
AciI	CCGC	1 cut(s)	122
AclWI	GGATC	1 cut(s)	59
AcyI	GRCGYC	2 cut(s)	112, 457
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	1 cut(s)	80
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	4 cut(s)	55, 196, 301, 448
AjnI	CCWGG	1 cut(s)	362
Alw26I	GTCTC	1 cut(s)	162
AlwI	GGATC	1 cut(s)	59
AoxI	GGCC	1 cut(s)	41
ApeKI	GCWGC	1 cut(s)	431
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	401
BbvI	GCAGC	1 cut(s)	443
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	364
BciVI	GTATCC	1 cut(s)	80
BcoDI	GTCTC	1 cut(s)	162
BfaI	CTAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	377
BfuI	GTATCC	1 cut(s)	80
BisI	GCNGC	2 cut(s)	122, 432
BlsI	GCNGC	2 cut(s)	123, 433
Bme1390I	CCNGG	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	41
BmrFI	CCNGG	1 cut(s)	364
BoxI	GACNNNNGTC	2 cut(s)	346, 456
BsaHI	GRCGYC	2 cut(s)	112, 457
BsaJI	CCNNGG	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	1 cut(s)	80
BseBI	CCWGG	1 cut(s)	364
BseDI	CCNNGG	1 cut(s)	363
BseLI	CCNNNNNNNGG	1 cut(s)	80
BseMII	CTCAG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	1 cut(s)	443
BshFI	GGCC	1 cut(s)	43
BsiSI	CCGG	4 cut(s)	44, 161, 188, 464
BslI	CCNNNNNNNGG	1 cut(s)	80
BsmAI	GTCTC	1 cut(s)	162
BsmBI	CGTCTC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	43
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	1 cut(s)	122
BspANI	GGCC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	196
BspMI	ACCTGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	59
BspQI	GCTCTTC	2 cut(s)	327, 366
BssECI	CCNNGG	1 cut(s)	363
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	2 cut(s)	112, 457
Bst2UI	CCWGG	1 cut(s)	364
Bst4CI	ACNGT	3 cut(s)	75, 264, 481
Bst6I	CTCTTC	2 cut(s)	327, 366
BstACI	GRCGYC	2 cut(s)	112, 457
BstDEI	CTNAG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	162
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	437
BstNI	CCWGG	1 cut(s)	364
BstPAI	GACNNNNGTC	2 cut(s)	346, 456
BstSCI	CCNGG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	443
BsuI	GTATCC	1 cut(s)	80
BsuRI	GGCC	1 cut(s)	43
BveI	ACCTGC	1 cut(s)	377
CfoI	GCGC	1 cut(s)	442
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	1 cut(s)	94
CviJI	RGCY	4 cut(s)	43, 208, 376, 399
CviKI_1	RGCY	4 cut(s)	43, 208, 376, 399
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	2 cut(s)	327, 366
EarI	CTCTTC	2 cut(s)	327, 366
EcoRII	CCWGG	1 cut(s)	362
Esp3I	CGTCTC	1 cut(s)	162
FaeI	CATG	1 cut(s)	97
FaiI	YATR	9 cut(s)	19, 24, 78, 95, 139, 219, 257, 273, 402
FatI	CATG	1 cut(s)	93
Fnu4HI	GCNGC	2 cut(s)	122, 432
Fsp4HI	GCNGC	2 cut(s)	122, 432
FspBI	CTAG	1 cut(s)	351
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	2 cut(s)	122, 432
HaeIII	GGCC	1 cut(s)	43
HapII	CCGG	4 cut(s)	44, 161, 188, 464
HhaI	GCGC	1 cut(s)	442
Hin1I	GRCGYC	2 cut(s)	112, 457
Hin1II	CATG	1 cut(s)	97
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HinfI	GANTC	3 cut(s)	182, 236, 356
HpaII	CCGG	4 cut(s)	44, 161, 188, 464
HphI	GGTGA	1 cut(s)	401
Hpy188I	TCNGA	4 cut(s)	130, 205, 235, 241
Hpy188III	TCNNGA	1 cut(s)	293
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	2 cut(s)	74, 386
HpyCH4III	ACNGT	3 cut(s)	75, 264, 481
HpyCH4IV	ACGT	3 cut(s)	7, 112, 457
HpyCH4V	TGCA	1 cut(s)	477
HpyF10VI	GCNNNNNNNGC	1 cut(s)	437
HpyF3I	CTNAG	1 cut(s)	204
HpySE526I	ACGT	3 cut(s)	7, 112, 457
Hsp92I	GRCGYC	2 cut(s)	112, 457
Hsp92II	CATG	1 cut(s)	97
HspAI	GCGC	1 cut(s)	440
Kzo9I	GATC	1 cut(s)	64
LguI	GCTCTTC	2 cut(s)	327, 366
Lsp1109I	GCAGC	1 cut(s)	443
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	3 cut(s)	7, 112, 457
MaeIII	GTNAC	3 cut(s)	8, 251, 267
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	5 cut(s)	238, 344, 351, 383, 476
MluCI	AATT	1 cut(s)	443
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	2 cut(s)	92, 213
MnlI	CCTC	5 cut(s)	124, 126, 339, 361, 389
MspI	CCGG	4 cut(s)	44, 161, 188, 464
MspR9I	CCNGG	1 cut(s)	364
MvaI	CCWGG	1 cut(s)	364
MwoI	GCNNNNNNNGC	1 cut(s)	437
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	267
PaqCI	CACCTGC	1 cut(s)	377
PciSI	GCTCTTC	2 cut(s)	327, 366
PfeI	GAWTC	2 cut(s)	236, 356
PkrI	GCNGC	2 cut(s)	123, 433
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
PshAI	GACNNNNGTC	2 cut(s)	346, 456
Psp6I	CCWGG	1 cut(s)	362
PspGI	CCWGG	1 cut(s)	362
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SapI	GCTCTTC	2 cut(s)	327, 366
SatI	GCNGC	2 cut(s)	122, 432
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	176
ScrFI	CCNGG	1 cut(s)	364
SetI	ASST	7 cut(s)	10, 85, 115, 350, 391, 421, 460
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	1 cut(s)	122
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	362
TaaI	ACNGT	3 cut(s)	75, 264, 481
TaiI	ACGT	3 cut(s)	10, 115, 460
TasI	AATT	1 cut(s)	443
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	2 cut(s)	236, 356
TseFI	GTSAC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	431
Tsp45I	GTSAC	1 cut(s)	267
TspDTI	ATGAA	3 cut(s)	93, 300, 476
TspGWI	ACGGA	2 cut(s)	123, 468
XspI	CTAG	1 cut(s)	351
ZraI	GACGTC	2 cut(s)	113, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.