Rroxscaffold_2G00083620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0002017
Physical Location & Seq
Reverse (-)
6285096 .. 6285929
834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00083620.1

Sequence Viewer

Length: 483 bp
ATGACACGTTACTACACATACTATACAAACAACCAGAATGGGGCGGACGACTTCAATGAGTGCGATCCAACACCGTATCAAGGTGGATACGACATAGGATTGATTTACGGACGTCCTCTGCCACCATCGGAGGAGATATGTTATCGCCACTCGTCGTCTCCGGCAAAGGATAACAACTACGACTCGCCGGAGTTCAAATCATCTGAGCCAAATGCGTATGACGAGAAGAAGTCCGAATCCGAATACAGCAGTTACATAAGACAGTCGTCACATAAGGAAAACAATGAAAATCCAGATTTGAAAGAAAATCAACAGCAACCAAAACCACAAGAAGAGCAACGACAGAGGTCTAGTGAATCTTCCAGGGAGGAAGAGCCTACTCTGGCCGGTGAAGGAGGCTACGGTGGTCGCAAGAAACTGGTGAGGTTATTGTCAAGAAAGATTCCGGTGAATTGTTTGCATAGCCCCTCCTTGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

18.34

Weight (kDa)

5.18

Isoelectric Point (pI)

77.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 115
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 112
AfiI CCNNNNNNNGG 3 cut(s) 40, 80, 472
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 3 cut(s) 55, 196, 301
AjnI CCWGG 1 cut(s) 362
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 401, 433, 460
BccI CCATC 1 cut(s) 133
BciT130I CCWGG 1 cut(s) 364
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 351
BfuI GTATCC 1 cut(s) 80
Bme1390I CCNGG 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 364
BoxI GACNNNNGTC 2 cut(s) 265, 346
BsaHI GRCGYC 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 363, 471
BsaWI WCCGGW 1 cut(s) 445
Bsc4I CCNNNNNNNGG 3 cut(s) 40, 80, 472
Bse118I RCCGGY 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 423
BseBI CCWGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 363, 471
BseLI CCNNNNNNNGG 3 cut(s) 40, 80, 472
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 423
BseRI GAGGAG 1 cut(s) 146
BshFI GGCC 1 cut(s) 386
BsiSI CCGG 4 cut(s) 161, 188, 387, 446
BslI CCNNNNNNNGG 3 cut(s) 40, 80, 472
BsmAI GTCTC 1 cut(s) 162
BsmBI CGTCTC 1 cut(s) 162
BsnI GGCC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 386
BspCNI CTCAG 1 cut(s) 196
BspPI GGATC 1 cut(s) 59
BspQI GCTCTTC 2 cut(s) 327, 366
BsrFI RCCGGY 1 cut(s) 386
BsrI ACTGG 1 cut(s) 423
BssAI RCCGGY 1 cut(s) 386
BssECI CCNNGG 2 cut(s) 363, 471
BssMI GATC 1 cut(s) 64
BssNI GRCGYC 1 cut(s) 112
BssT1I CCWWGG 1 cut(s) 471
Bst2UI CCWGG 1 cut(s) 364
Bst4CI ACNGT 3 cut(s) 75, 264, 404
Bst6I CTCTTC 2 cut(s) 327, 366
BstACI GRCGYC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 204
BstKTI GATC 1 cut(s) 67
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 364
BstPAI GACNNNNGTC 2 cut(s) 265, 346
BstSCI CCNGG 1 cut(s) 362
BsuI GTATCC 1 cut(s) 80
BsuRI GGCC 1 cut(s) 386
Cfr10I RCCGGY 1 cut(s) 386
CviJI RGCY 5 cut(s) 208, 376, 386, 399, 465
CviKI_1 RGCY 5 cut(s) 208, 376, 386, 399, 465
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
EaeI YGGCCR 1 cut(s) 384
Eam1104I CTCTTC 2 cut(s) 327, 366
EarI CTCTTC 2 cut(s) 327, 366
EciI GGCGGA 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 471
ErhI CCWWGG 1 cut(s) 471
Esp3I CGTCTC 1 cut(s) 162
FaiI YATR 8 cut(s) 19, 24, 95, 139, 219, 257, 273, 462
FspBI CTAG 1 cut(s) 351
HaeIII GGCC 1 cut(s) 386
HapII CCGG 4 cut(s) 161, 188, 387, 446
Hin1I GRCGYC 1 cut(s) 112
HinfI GANTC 4 cut(s) 182, 236, 356, 442
HpaII CCGG 4 cut(s) 161, 188, 387, 446
HphI GGTGA 3 cut(s) 401, 433, 460
Hpy188I TCNGA 4 cut(s) 130, 205, 235, 241
Hpy188III TCNNGA 2 cut(s) 293, 435
Hpy99I CGWCG 1 cut(s) 157
HpyAV CCTTC 1 cut(s) 386
HpyCH4III ACNGT 3 cut(s) 75, 264, 404
HpyCH4IV ACGT 2 cut(s) 7, 112
HpyCH4V TGCA 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 7, 112
Hsp92I GRCGYC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 64
LguI GCTCTTC 2 cut(s) 327, 366
MaeI CTAG 1 cut(s) 351
MaeII ACGT 2 cut(s) 7, 112
MaeIII GTNAC 3 cut(s) 8, 251, 267
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 4 cut(s) 238, 344, 351, 383
MluCI AATT 1 cut(s) 451
MlyI GAGTC 1 cut(s) 176
MmeI TCCRAC 1 cut(s) 92
MnlI CCTC 7 cut(s) 124, 126, 339, 361, 389, 417, 478
MseI TTAA 1 cut(s) 481
MspI CCGG 4 cut(s) 161, 188, 387, 446
MspR9I CCNGG 1 cut(s) 364
MvaI CCWGG 1 cut(s) 364
NdeII GATC 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 267
PciSI GCTCTTC 2 cut(s) 327, 366
PfeI GAWTC 3 cut(s) 236, 356, 442
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PshAI GACNNNNGTC 2 cut(s) 265, 346
Psp6I CCWGG 1 cut(s) 362
PspGI CCWGG 1 cut(s) 362
SapI GCTCTTC 2 cut(s) 327, 366
SaqAI TTAA 1 cut(s) 481
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 176
ScrFI CCNGG 1 cut(s) 364
SetI ASST 5 cut(s) 10, 85, 115, 350, 428
Sse9I AATT 1 cut(s) 451
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 362
StyI CCWWGG 1 cut(s) 471
TaaI ACNGT 3 cut(s) 75, 264, 404
TaiI ACGT 2 cut(s) 10, 115
TasI AATT 1 cut(s) 451
TfiI GAWTC 3 cut(s) 236, 356, 442
Tru1I TTAA 1 cut(s) 481
Tru9I TTAA 1 cut(s) 481
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 1 cut(s) 300
TspGWI ACGGA 1 cut(s) 123
XspI CTAG 1 cut(s) 351
ZraI GACGTC 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.