Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002017

Physical Location & Seq

Genomic Coordinates Reverse (-)

77699709 .. 77702002

Gene Structure 2294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG486900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGTGAACGACGGCATAGATTTGGACGAGGTAGTCACAGATGCAATTTGTCGGGTTCTTGGAGTTTTCTTTGAATGCCCAGAAGGTGGCTGCCGATGCAATCTCCCTGATGCAATCTGTCGGATCAAGACGACTACGAACGCTCCGATCTCTCCTCTTGCAGCGAACCCTTCGTCGACGAGGCCCTCAATAACAAGTACAGCAGGCTACCAGCGACCCAAGCCCCGACCTGGATTTGGTGGACGACCCGATCATGAGGAGGGTGCGGAAGGTGGAGGAGAGTATGGATCCAAGCCCAGTAGACCTCAGTATGGATCCCAGGAGCCCGGATCGGAGTTTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

12.0

Weight (kDa)

4.91

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002017)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29075
fragaria_vesca	FvH4_2g10581 FvH4_4g17390 FvH4_6g48020 FvH4_6g48030 FvH4_6g48030 FvH4_6g48030
malus_domestica	MD09G1054700.v1.1 MD09G1054800.v1.1 MD17G1052800.v1.1 MD17G1052900.v1.1
prunus_persica	Prupe.3G263700_v2.0.a1 Prupe.3G263800_v2.0.a1
pyrus_communis	pycom111g04600 pycom17g05080
rosa_chinensis	RchiOBHm_Chr2g0167311 RchiOBHm_Chr2g0167321
rosa_laevigata	RLG00000021706 RLG00000021708 RLG00000021731 RLG00000024056 RLG00000035185
rosa_multiflora	Rmu_sc0001840.1_g000012 Rmu_sc0001840.1_g000017 Rmu_sc0014204.1_g000003 Rmu_sc0014204.1_g000007
rosa_roxburghii	Rroxscaffold_2G00083600 Rroxscaffold_2G00083620 Rroxscaffold_7G00180460
rosa_rugosa	Rorug02G0529400 Rorug02G0529500 Rorug05G0310100
rosa_samantha	Rh2AG596400 Rh2AG596500 Rh2BG607800 Rh2BG607900 Rh2CG578500 Rh2CG578700 Rh2DG619200 Rh2DG619300 Rh5BG389900 Rh5BG486900 Rh5CG511300 Rh6AG351500
rosa_wichuraiana	Rw2G049640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	86
AccI	GTMKAC	2 cut(s)	176, 301
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	6 cut(s)	131, 282, 295, 309, 322, 337
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	4 cut(s)	86, 230, 236, 311
AgsI	TTSAA	1 cut(s)	74
AjnI	CCWGG	2 cut(s)	229, 318
AlwI	GGATC	6 cut(s)	131, 282, 295, 309, 322, 337
AoxI	GGCC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	90, 161
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	183
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	16
BamHI	GGATCC	2 cut(s)	287, 314
BanII	GRGCYC	1 cut(s)	327
BbvI	GCAGC	2 cut(s)	77, 173
BceAI	ACGGC	1 cut(s)	28
BciT130I	CCWGG	2 cut(s)	231, 320
BcnI	CCSGG	1 cut(s)	327
BisI	GCNGC	2 cut(s)	91, 162
BlsI	GCNGC	2 cut(s)	92, 163
Bme1390I	CCNGG	3 cut(s)	231, 320, 327
BmgT120I	GGNCC	1 cut(s)	183
BmiI	GGNNCC	3 cut(s)	289, 316, 324
BmrFI	CCNGG	3 cut(s)	231, 320, 327
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	3 cut(s)	31, 86, 100
BmuI	ACTGGG	1 cut(s)	291
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	318
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 230, 236, 311
Bse1I	ACTGG	1 cut(s)	297
BseBI	CCWGG	2 cut(s)	231, 320
BseDI	CCNNGG	1 cut(s)	318
BseLI	CCNNNNNNNGG	4 cut(s)	86, 230, 236, 311
BseMII	CTCAG	1 cut(s)	320
BseNI	ACTGG	1 cut(s)	297
BseRI	GAGGAG	3 cut(s)	144, 272, 291
BseXI	GCAGC	2 cut(s)	77, 173
BshFI	GGCC	1 cut(s)	184
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	4 cut(s)	86, 230, 236, 311
BsmI	GAATGC	1 cut(s)	80
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	1 cut(s)	327
Bsp143I	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
BspACI	CCGC	1 cut(s)	266
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	1 cut(s)	319
BspHI	TCATGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	289, 316, 324
BspPI	GGATC	6 cut(s)	131, 282, 295, 309, 322, 337
BsrI	ACTGG	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	318
BssMI	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
Bst2UI	CCWGG	2 cut(s)	231, 320
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	306
BstKTI	GATC	6 cut(s)	126, 150, 253, 290, 317, 332
BstMBI	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 220
BstNI	CCWGG	2 cut(s)	231, 320
BstSCI	CCNGG	3 cut(s)	229, 318, 325
BstV1I	GCAGC	2 cut(s)	77, 173
BstX2I	RGATCY	2 cut(s)	287, 314
BstYI	RGATCY	2 cut(s)	287, 314
BsuRI	GGCC	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	205
CciI	TCATGA	1 cut(s)	253
Cfr13I	GGNCC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	6 cut(s)	90, 184, 207, 223, 295, 325
CviKI_1	RGCY	6 cut(s)	90, 184, 207, 223, 295, 325
CviQI	GTAC	1 cut(s)	198
DdeI	CTNAG	1 cut(s)	306
DpnI	GATC	6 cut(s)	125, 149, 252, 289, 316, 331
DpnII	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
DrdI	GACNNNNNNGTC	1 cut(s)	32
DseDI	GACNNNNNNGTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	327
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	2 cut(s)	229, 318
EcoT38I	GRGCYC	1 cut(s)	327
FaeI	CATG	1 cut(s)	257
FaiI	YATR	4 cut(s)	17, 255, 285, 312
FatI	CATG	1 cut(s)	253
FblI	GTMKAC	2 cut(s)	176, 301
Fnu4HI	GCNGC	2 cut(s)	91, 162
FriOI	GRGCYC	1 cut(s)	327
Fsp4HI	GCNGC	2 cut(s)	91, 162
GluI	GCNGC	2 cut(s)	91, 162
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	1 cut(s)	327
Hin1II	CATG	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	177
HindII	GTYRAC	1 cut(s)	177
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	4 cut(s)	7, 177, 242, 302
Hpy188I	TCNGA	3 cut(s)	123, 147, 334
Hpy188III	TCNNGA	2 cut(s)	127, 254
Hpy8I	GTNNAC	4 cut(s)	7, 177, 242, 302
Hpy99I	CGWCG	3 cut(s)	14, 178, 181
HpyAV	CCTTC	3 cut(s)	77, 180, 263
HpyCH4V	TGCA	4 cut(s)	44, 99, 113, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 220
HpyF3I	CTNAG	1 cut(s)	306
Hsp92II	CATG	1 cut(s)	257
Kzo9I	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
LmnI	GCTCC	2 cut(s)	148, 322
Lsp1109I	GCAGC	2 cut(s)	77, 173
LweI	GCATC	3 cut(s)	31, 86, 100
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	6 cut(s)	125, 149, 252, 289, 316, 331
MboI	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
MflI	RGATCY	2 cut(s)	287, 314
MhlI	GDGCHC	1 cut(s)	327
MluCI	AATT	1 cut(s)	45
MmeI	TCCRAC	1 cut(s)	101
MnlI	CCTC	8 cut(s)	22, 165, 174, 196, 250, 253, 269, 315
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	3 cut(s)	231, 320, 327
Mva1269I	GAATGC	1 cut(s)	80
MvaI	CCWGG	2 cut(s)	231, 320
MwoI	GCNNNNNNNGC	2 cut(s)	96, 220
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
NlaIII	CATG	1 cut(s)	257
NlaIV	GGNNCC	3 cut(s)	289, 316, 324
NmuCI	GTSAC	1 cut(s)	34
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	143
PctI	GAATGC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	86
PkrI	GCNGC	2 cut(s)	92, 163
Psp6I	CCWGG	2 cut(s)	229, 318
PspGI	CCWGG	2 cut(s)	229, 318
PspN4I	GGNNCC	3 cut(s)	289, 316, 324
PspPI	GGNCC	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	287, 314
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
SalI	GTCGAC	1 cut(s)	175
SatI	GCNGC	2 cut(s)	91, 162
Sau3AI	GATC	6 cut(s)	123, 147, 250, 287, 314, 329
Sau96I	GGNCC	1 cut(s)	183
ScrFI	CCNGG	3 cut(s)	231, 320, 327
SduI	GDGCHC	1 cut(s)	327
SetI	ASST	5 cut(s)	33, 88, 232, 274, 307
SfaNI	GCATC	3 cut(s)	31, 86, 100
SgrDI	CGTCGACG	1 cut(s)	175
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	229, 318, 325
TaqI	TCGA	1 cut(s)	176
TasI	AATT	1 cut(s)	45
TatI	WGTACW	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	2 cut(s)	90, 161
Tsp45I	GTSAC	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	2 cut(s)	176, 301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.