Rroxscaffold_7G00180460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0002017
Physical Location & Seq
Reverse (-)
19856503 .. 19857754
1252 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00180460.1

Sequence Viewer

Length: 255 bp
ATGGCGAGCTTGTGGAGGAAGGAACAGCCGCCGGGAGGCTCGGAGGAGGCGGCGGAGACAAGATCGAAGACGACGGAGCAAGGTTCTAATCGATCTGTTTGGGCTTTTACTTTCTGGGTTTTCAATCGAAGAGCCTCAAACTCTTGGTTGCTTTCTTCCTCAAGCAGCAAGAGAATAGAAGCCCGAAAGCTTCTCGGGTTCTTCGACCTATTTTTCGACTCCGGCCACGGCTGCAAGCGAGACCGGTGGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.73

Weight (kDa)

10.15

Isoelectric Point (pI)

81.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 29, 50, 53
AcoI YGGCCR 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 35
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 1 cut(s) 124
AluBI AGCT 2 cut(s) 9, 190
AluI AGCT 2 cut(s) 9, 190
Alw26I GTCTC 2 cut(s) 50, 234
Ama87I CYCGRG 1 cut(s) 194
AoxI GGCC 1 cut(s) 223
ApeKI GCWGC 2 cut(s) 165, 231
ArsI GACNNNNNNTTYG 2 cut(s) 197, 229
AsiGI ACCGGT 1 cut(s) 243
AsuC2I CCSGG 1 cut(s) 33
AvaI CYCGRG 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 74
BbvI GCAGC 2 cut(s) 177, 218
BceAI ACGGC 1 cut(s) 244
BcnI CCSGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 50, 234
BisI GCNGC 4 cut(s) 29, 51, 166, 232
BlsI GCNGC 4 cut(s) 30, 52, 167, 233
Bme1390I CCNGG 1 cut(s) 33
BmeT110I CYCGRG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 145
BpuMI CCSGG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 91
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 226
BsaWI WCCGGW 1 cut(s) 243
Bsc4I CCNNNNNNNGG 1 cut(s) 35
Bse118I RCCGGY 1 cut(s) 243
BseCI ATCGAT 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 226
BseLI CCNNNNNNNGG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 177, 218
BshFI GGCC 1 cut(s) 225
BshTI ACCGGT 1 cut(s) 243
BshVI ATCGAT 1 cut(s) 91
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 32, 222, 244
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 50, 234
BsnI GGCC 1 cut(s) 225
Bso31I GGTCTC 1 cut(s) 234
BsoBI CYCGRG 1 cut(s) 194
Bsp143I GATC 2 cut(s) 62, 92
BspACI CCGC 3 cut(s) 29, 50, 53
BspANI GGCC 1 cut(s) 225
BspDI ATCGAT 1 cut(s) 91
BspQI GCTCTTC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 243
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 1 cut(s) 226
BssMI GATC 2 cut(s) 62, 92
Bst6I CTCTTC 1 cut(s) 124
BstC8I GCNNGC 2 cut(s) 7, 236
BstDSI CCRYGG 1 cut(s) 226
BstKTI GATC 2 cut(s) 65, 95
BstMAI GTCTC 2 cut(s) 50, 234
BstMBI GATC 2 cut(s) 62, 92
BstMWI GCNNNNNNNGC 1 cut(s) 231
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 2 cut(s) 177, 218
BstV2I GAAGAC 1 cut(s) 74
Bsu15I ATCGAT 1 cut(s) 91
BsuRI GGCC 1 cut(s) 225
BsuTUI ATCGAT 1 cut(s) 91
BtgI CCRYGG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 7, 236
Cfr10I RCCGGY 1 cut(s) 243
ClaI ATCGAT 1 cut(s) 91
CspAI ACCGGT 1 cut(s) 243
CviJI RGCY 9 cut(s) 9, 28, 39, 104, 134, 182, 190, 225, 231
CviKI_1 RGCY 9 cut(s) 9, 28, 39, 104, 134, 182, 190, 225, 231
DpnI GATC 2 cut(s) 64, 94
DpnII GATC 2 cut(s) 62, 92
EaeI YGGCCR 1 cut(s) 223
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
EciI GGCGGA 1 cut(s) 68
Eco31I GGTCTC 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 194
Fnu4HI GCNGC 4 cut(s) 29, 51, 166, 232
Fsp4HI GCNGC 4 cut(s) 29, 51, 166, 232
GluI GCNGC 4 cut(s) 29, 51, 166, 232
HaeIII GGCC 1 cut(s) 225
HapII CCGG 3 cut(s) 32, 222, 244
HindIII AAGCTT 1 cut(s) 188
HinfI GANTC 1 cut(s) 218
HpaII CCGG 3 cut(s) 32, 222, 244
Hpy188I TCNGA 1 cut(s) 43
Hpy99I CGWCG 1 cut(s) 76
HpyAV CCTTC 1 cut(s) 13
HpyCH4V TGCA 1 cut(s) 234
HpyF10VI GCNNNNNNNGC 1 cut(s) 231
Kzo9I GATC 2 cut(s) 62, 92
LguI GCTCTTC 1 cut(s) 124
LmnI GCTCC 1 cut(s) 76
LpnPI CCDG 3 cut(s) 45, 100, 235
Lsp1109I GCAGC 2 cut(s) 177, 218
MalI GATC 2 cut(s) 64, 94
MboI GATC 2 cut(s) 62, 92
MboII GAAGA 4 cut(s) 79, 141, 147, 193
MlyI GAGTC 1 cut(s) 212
MnlI CCTC 6 cut(s) 9, 29, 37, 40, 145, 169
MspI CCGG 3 cut(s) 32, 222, 244
MspR9I CCNGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 231
NciI CCSGG 1 cut(s) 33
NdeII GATC 2 cut(s) 62, 92
PciSI GCTCTTC 1 cut(s) 124
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 4 cut(s) 30, 52, 167, 233
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
SapI GCTCTTC 1 cut(s) 124
SatI GCNGC 4 cut(s) 29, 51, 166, 232
Sau3AI GATC 2 cut(s) 62, 92
SchI GAGTC 1 cut(s) 212
ScrFI CCNGG 1 cut(s) 33
SetI ASST 4 cut(s) 11, 85, 192, 210
SmlI CTYRAG 1 cut(s) 160
SmoI CTYRAG 1 cut(s) 160
SsiI CCGC 3 cut(s) 29, 50, 53
StyD4I CCNGG 1 cut(s) 31
TaqI TCGA 5 cut(s) 65, 91, 127, 204, 216
TauI GCSGC 2 cut(s) 31, 53
TseI GCWGC 2 cut(s) 165, 231
TspGWI ACGGA 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.