RchiOBHm_Chr2g0167321

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002017
Physical Location & Seq
Forward (+)
81892545 .. 81895728
3184 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53511

Sequence Viewer

Length: 1311 bp
ATGCCGTACTACTCGCACGTCGACGAAGTCCACGACTTCGACGAGTACGATCCGACCCCCTACGGCGGCGGATACGACCTGTTTCTCACCTACGGCCGCCCCCTCGAGCCTTCCGAGGAGACCTGCTACCCCAGCTCCTCCGATCAGGACGACTACGAACGCCCCGATCTCTCCTCCTACAGCGAGCCCTCCGCCTACGCCGATGAGGCCCTCAATAACGAGTACAGCAGCTACCAGCGTCCCAAGCCCCGACCCGGATTTGGTGGACGACCTGATCATTACGAGGCTGCGGAAGGTGGAGGAGAGTATGGATCCAGGCCCAGTAGGCCTCAGTATGGATCCGAGGAGCCCGGATCGGAGTATGGATCCGGTTACGGGCGGAAACCCGAGGCCGATCAGCCCAGTTCCGAGTACGGGTCGGGTTACGGTCGGAAGCCGGAGTACAAAGCGCCTGAATCGGAGTATGGATCGGGTTACGGGCGCAAACCCGAGTACGAGGCGCCGGAATCGGAGTATGGTCGGAAACCCGAGTACGAAGCGCCTGTCGGGGCGGGCTATGGCAGGAAACCCGATTACGAAGCGCCGGTCGGGTCGGGTTATGGCCGGAAGCCAAGTTATGGTGAGGATGAGAGTGGTGGATACGGCGATGAGCCGCCGAGGCGGAAGCCGAGCTATGGTGAGGAGAAACCCGAGTTTGAGGGTTCGGGTTATGGGGATGAACCACCGAGGAGACCTGGGTTTGGAAGGCCTGGTGGTTATGGTGGGGAGGAGAGTGAAGAGAGGCCCAGTTATGGGAGGAGTGAGTTTCAGGAGCCTGGTTATGGTGATGAGCCGCCGAGGAAGCCCAGCTATGGTGGTAGGACTAGTTATGAGACCCCGGAAACTGACGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGGGACTGAGGAGTATGGGAAGCCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAAACTGAGGAGTATGGGAAACCCAGCTATGGCAGGCCAAGCTATGAGACCCCGGAGACTGAGGAGTATGGGAAGCCCAGTTATGGGCGGTCTGAGGAGCAGGAGTACCGCAAGCCGAAGCCTAGCTATGGGAGGGGTAGTGATGATGAGGATTCTGAGCGTCGTCAGAGGCGTGGTAGTGATGATGAGGATTCTCAGCCTCGTCGGGGATATGGTGAAGAGGGCTATGGCCGCAAGAAATATGGAAATGATGACTCAGATGATGATGAGGAGAAAAAGCAGCGTCGCCACCACCACCATCGCAAGAGCTACGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

436

Amino Acids

49.28

Weight (kDa)

4.68

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 131
AccB1I GGYRCC 1 cut(s) 499
AccB7I CCANNNNNTGG 1 cut(s) 617
AccI GTMKAC 1 cut(s) 21
AclWI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
AcoI YGGCCR 3 cut(s) 94, 601, 1216
AcyI GRCGYC 1 cut(s) 500
AfaI GTAC 8 cut(s) 8, 47, 224, 413, 443, 494, 533, 1094
AhlI ACTAGT 1 cut(s) 863
AjiI CACGTC 1 cut(s) 19
AjnI CCWGG 4 cut(s) 314, 733, 748, 814
Alw26I GTCTC 7 cut(s) 113, 724, 866, 920, 974, 1028, 1037
AlwI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
Ama87I CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
ApeKI GCWGC 3 cut(s) 228, 287, 1267
ArsI GACNNNNNNTTYG 4 cut(s) 528, 560, 570, 602
AspLEI GCGC 5 cut(s) 451, 483, 502, 541, 583
AspS9I GGNCC 3 cut(s) 208, 318, 783
AsuC2I CCSGG 7 cut(s) 255, 351, 878, 932, 933, 986, 1040
AsuHPI GGTGA 5 cut(s) 79, 632, 689, 836, 1214
AvaI CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
BamHI GGATCC 3 cut(s) 311, 338, 365
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 2 cut(s) 189, 351
BarI GAAGNNNNNNTAC 2 cut(s) 425, 457
BbvI GCAGC 3 cut(s) 240, 274, 1279
BccI CCATC 1 cut(s) 1293
BceAI ACGGC 3 cut(s) 79, 109, 658
BciT130I CCWGG 4 cut(s) 316, 735, 750, 816
BciVI GTATCC 2 cut(s) 65, 632
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 7 cut(s) 255, 351, 878, 932, 933, 986, 1040
BcoDI GTCTC 7 cut(s) 113, 724, 866, 920, 974, 1028, 1037
BcuI ACTAGT 1 cut(s) 863
BfaI CTAG 2 cut(s) 864, 1110
BfmI CTRYAG 1 cut(s) 178
BfoI RGCGCY 4 cut(s) 452, 503, 542, 584
BfuAI ACCTGC 1 cut(s) 131
BfuI GTATCC 2 cut(s) 65, 632
BglI GCCNNNNNGGC 3 cut(s) 206, 325, 658
BisI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1219, 1268
BlsI GCNGC 8 cut(s) 68, 98, 230, 289, 654, 834, 1220, 1269
BmeT110I CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
BmgBI CACGTC 1 cut(s) 19
BmgT120I GGNCC 3 cut(s) 208, 318, 783
BmiI GGNNCC 6 cut(s) 313, 340, 348, 367, 501, 813
BmrI ACTGGG 4 cut(s) 315, 396, 780, 1059
BmuI ACTGGG 4 cut(s) 315, 396, 780, 1059
BpuMI CCSGG 7 cut(s) 255, 351, 878, 932, 933, 986, 1040
BsaHI GRCGYC 1 cut(s) 500
BsaI GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 6 cut(s) 119, 149, 1076, 1106, 1111, 1141
Bse118I RCCGGY 1 cut(s) 583
Bse1I ACTGG 4 cut(s) 321, 402, 786, 1065
BseBI CCWGG 4 cut(s) 316, 735, 750, 816
BseGI GGATG 2 cut(s) 631, 721
BseMII CTCAG 8 cut(s) 344, 930, 984, 1038, 1071, 1134, 1196, 1257
BseNI ACTGG 4 cut(s) 321, 402, 786, 1065
BseX3I CGGCCG 1 cut(s) 94
BseXI GCAGC 3 cut(s) 240, 274, 1279
BseYI CCCAGC 5 cut(s) 131, 845, 902, 956, 1010
Bsh1285I CGRYCG 3 cut(s) 97, 430, 588
BshNI GGYRCC 1 cut(s) 499
BsiEI CGRYCG 3 cut(s) 97, 430, 588
BsiHKCI CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
BslFI GGGAC 2 cut(s) 225, 949
BsmAI GTCTC 7 cut(s) 113, 724, 866, 920, 974, 1028, 1037
BsmFI GGGAC 2 cut(s) 225, 949
Bso31I GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsoBI CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
Bsp1286I GDGCHC 2 cut(s) 189, 351
BspCNI CTCAG 8 cut(s) 343, 931, 985, 1039, 1072, 1135, 1195, 1256
BspLI GGNNCC 6 cut(s) 313, 340, 348, 367, 501, 813
BspMI ACCTGC 1 cut(s) 131
BspPI GGATC 9 cut(s) 44, 306, 319, 333, 346, 360, 361, 373, 475
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
BsrFI RCCGGY 1 cut(s) 583
BsrI ACTGG 4 cut(s) 321, 402, 786, 1065
BssAI RCCGGY 1 cut(s) 583
BssNI GRCGYC 1 cut(s) 500
Bst2UI CCWGG 4 cut(s) 316, 735, 750, 816
Bst4CI ACNGT 1 cut(s) 428
Bst6I CTCTTC 2 cut(s) 771, 1200
BstACI GRCGYC 1 cut(s) 500
BstC8I GCNNGC 6 cut(s) 185, 553, 914, 968, 1022, 1100
BstDEI CTNAG 8 cut(s) 330, 939, 993, 1047, 1080, 1143, 1182, 1243
BstF5I GGATG 2 cut(s) 631, 721
BstH2I RGCGCY 4 cut(s) 452, 503, 542, 584
BstHHI GCGC 5 cut(s) 451, 483, 502, 541, 583
BstMAI GTCTC 7 cut(s) 113, 724, 866, 920, 974, 1028, 1037
BstMCI CGRYCG 3 cut(s) 97, 430, 588
BstNI CCWGG 4 cut(s) 316, 735, 750, 816
BstSFI CTRYAG 1 cut(s) 178
BstV1I GCAGC 3 cut(s) 240, 274, 1279
BstX2I RGATCY 3 cut(s) 311, 338, 365
BstYI RGATCY 3 cut(s) 311, 338, 365
BstZI CGGCCG 1 cut(s) 94
BsuI GTATCC 2 cut(s) 65, 632
BtgZI GCGATG 2 cut(s) 660, 1271
BtrI CACGTC 1 cut(s) 19
BtsCI GGATG 2 cut(s) 631, 721
BveI ACCTGC 1 cut(s) 131
Cac8I GCNNGC 6 cut(s) 185, 553, 914, 968, 1022, 1100
CfoI GCGC 5 cut(s) 451, 483, 502, 541, 583
Cfr10I RCCGGY 1 cut(s) 583
Cfr13I GGNCC 3 cut(s) 208, 318, 783
Cfr9I CCCGGG 1 cut(s) 931
CseI GACGC 3 cut(s) 227, 1136, 1259
Csp6I GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1093
CviQI GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1093
DdeI CTNAG 8 cut(s) 330, 939, 993, 1047, 1080, 1143, 1182, 1243
DinI GGCGCC 1 cut(s) 501
EaeI YGGCCR 3 cut(s) 94, 601, 1216
EagI CGGCCG 1 cut(s) 94
Eam1104I CTCTTC 2 cut(s) 771, 1200
EarI CTCTTC 2 cut(s) 771, 1200
EciI GGCGGA 4 cut(s) 84, 181, 394, 676
EclXI CGGCCG 1 cut(s) 94
Eco147I AGGCCT 2 cut(s) 328, 748
Eco24I GRGCYC 2 cut(s) 189, 351
Eco31I GGTCTC 6 cut(s) 113, 724, 866, 920, 974, 1028
Eco52I CGGCCG 1 cut(s) 94
Eco88I CYCGRG 6 cut(s) 104, 386, 488, 527, 689, 931
EcoO109I RGGNCCY 1 cut(s) 208
EcoRII CCWGG 4 cut(s) 314, 733, 748, 814
EcoT38I GRGCYC 2 cut(s) 189, 351
EgeI GGCGCC 1 cut(s) 501
EheI GGCGCC 1 cut(s) 501
FaqI GGGAC 2 cut(s) 225, 949
FauI CCCGC 1 cut(s) 544
FbaI TGATCA 1 cut(s) 274
FblI GTMKAC 1 cut(s) 21
Fnu4HI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1219, 1268
FokI GGATG 2 cut(s) 638, 728
FriOI GRGCYC 2 cut(s) 189, 351
Fsp4HI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1219, 1268
FspBI CTAG 2 cut(s) 864, 1110
GlaI GCGC 5 cut(s) 450, 482, 501, 540, 582
GluI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1219, 1268
GsaI CCCAGC 5 cut(s) 135, 849, 906, 960, 1014
HaeII RGCGCY 4 cut(s) 452, 503, 542, 584
HgaI GACGC 3 cut(s) 227, 1136, 1259
HhaI GCGC 5 cut(s) 451, 483, 502, 541, 583
Hin1I GRCGYC 1 cut(s) 500
Hin6I GCGC 5 cut(s) 449, 481, 500, 539, 581
HinP1I GCGC 5 cut(s) 449, 481, 500, 539, 581
HincII GTYRAC 1 cut(s) 22
HindII GTYRAC 1 cut(s) 22
HinfI GANTC 5 cut(s) 455, 506, 1139, 1178, 1241
HphI GGTGA 5 cut(s) 79, 632, 689, 836, 1214
Hpy166II GTNNAC 3 cut(s) 22, 31, 266
Hpy188III TCNNGA 2 cut(s) 146, 809
Hpy8I GTNNAC 3 cut(s) 22, 31, 266
Hpy99I CGWCG 6 cut(s) 23, 26, 44, 1152, 1194, 1275
HpyAV CCTTC 3 cut(s) 120, 287, 738
HpyCH4III ACNGT 1 cut(s) 428
HpyCH4IV ACGT 1 cut(s) 18
HpyF3I CTNAG 8 cut(s) 330, 939, 993, 1047, 1080, 1143, 1182, 1243
HpySE526I ACGT 1 cut(s) 18
Hsp92I GRCGYC 1 cut(s) 500
HspAI GCGC 5 cut(s) 449, 481, 500, 539, 581
KasI GGCGCC 1 cut(s) 499
Ksp22I TGATCA 1 cut(s) 274
LmnI GCTCC 4 cut(s) 140, 346, 811, 1084
Lsp1109I GCAGC 3 cut(s) 240, 274, 1279
MaeI CTAG 2 cut(s) 864, 1110
MaeII ACGT 1 cut(s) 18
MaeIII GTNAC 3 cut(s) 371, 422, 473
MboII GAAGA 2 cut(s) 788, 1217
MflI RGATCY 3 cut(s) 311, 338, 365
MhlI GDGCHC 2 cut(s) 189, 351
Mly113I GGCGCC 1 cut(s) 500
MlyI GAGTC 1 cut(s) 1235
MmeI TCCRAC 3 cut(s) 77, 410, 500
MvaI CCWGG 4 cut(s) 316, 735, 750, 816
NarI GGCGCC 1 cut(s) 500
NciI CCSGG 7 cut(s) 255, 351, 878, 932, 933, 986, 1040
NlaIV GGNNCC 6 cut(s) 313, 340, 348, 367, 501, 813
NmeAIII GCCGAG 3 cut(s) 681, 693, 861
PaeR7I CTCGAG 1 cut(s) 104
PceI AGGCCT 2 cut(s) 328, 748
PcsI WCGNNNNNNNCGW 6 cut(s) 30, 39, 45, 111, 162, 1156
PfeI GAWTC 4 cut(s) 455, 506, 1139, 1178
PflFI GACNNNGTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 617
PkrI GCNGC 8 cut(s) 68, 98, 230, 289, 654, 834, 1220, 1269
PleI GAGTC 1 cut(s) 1235
PluTI GGCGCC 1 cut(s) 503
PpsI GAGTC 1 cut(s) 1235
Psp6I CCWGG 4 cut(s) 314, 733, 748, 814
PspFI CCCAGC 5 cut(s) 131, 845, 902, 956, 1010
PspGI CCWGG 4 cut(s) 314, 733, 748, 814
PspN4I GGNNCC 6 cut(s) 313, 340, 348, 367, 501, 813
PspPI GGNCC 3 cut(s) 208, 318, 783
PspXI VCTCGAGB 1 cut(s) 104
PsuI RGATCY 3 cut(s) 311, 338, 365
PsyI GACNNNGTC 1 cut(s) 26
RsaI GTAC 8 cut(s) 8, 47, 224, 413, 443, 494, 533, 1094
RsaNI GTAC 8 cut(s) 7, 46, 223, 412, 442, 493, 532, 1093
SalI GTCGAC 1 cut(s) 20
SatI GCNGC 8 cut(s) 67, 97, 229, 288, 653, 833, 1219, 1268
Sau96I GGNCC 3 cut(s) 208, 318, 783
SchI GAGTC 1 cut(s) 1235
SduI GDGCHC 2 cut(s) 189, 351
SfcI CTRYAG 1 cut(s) 178
SfiI GGCCNNNNNGGCC 1 cut(s) 325
SfoI GGCGCC 1 cut(s) 501
Sfr274I CTCGAG 1 cut(s) 104
SgrDI CGTCGACG 1 cut(s) 20
SlaI CTCGAG 1 cut(s) 104
SmaI CCCGGG 1 cut(s) 933
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
SpeI ACTAGT 1 cut(s) 863
SseBI AGGCCT 2 cut(s) 328, 748
SspDI GGCGCC 1 cut(s) 499
SspMI CTAG 2 cut(s) 864, 1110
StuI AGGCCT 2 cut(s) 328, 748
TaaI ACNGT 1 cut(s) 428
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 21, 39, 105
TatI WGTACW 2 cut(s) 222, 441
TauI GCSGC 5 cut(s) 69, 99, 655, 835, 1221
TfiI GAWTC 4 cut(s) 455, 506, 1139, 1178
TseI GCWGC 3 cut(s) 228, 287, 1267
TspDTI ATGAA 1 cut(s) 732
TspMI CCCGGG 1 cut(s) 931
Tth111I GACNNNGTC 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 617
XhoI CTCGAG 1 cut(s) 104
XmaI CCCGGG 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 21
XspI CTAG 2 cut(s) 864, 1110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.