AT3G44700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002062
Physical Location & Seq
Reverse (-)
16236992 .. 16237793
802 bp
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UTR
Exon/CDS
Intron
AT3G44700.1

Sequence Viewer

Length: 642 bp
ATGAACCATCGTGAAGAAGCAAAGAGGGCAAACAATGATGAAGACAACGGTGGTATAGATATAGTTGTAGAAAAATCTCATGATTTAATTTCAGGAGGGTCGGTCCCGAAGCTTCTCAAGAAATCAGCCGGTGGAGAAAAGTGTTGCATCTTTAGAATCCATCAGAGACTCCGGAACAACAACTACAAGGACGCTTACGAACCAAGGGTTCTCTCAATCGGTCCATACCATCATGGAAAAGAACATCTCCAAATGATTCAAGAGCACAAACATCGATTTCTCGGGATCTTCATGGATGAAGCTCAAAAGAAGGGTGTGGATATGAAGGATTTGATAGAAGCAGTGTCAGAGTTGGAAGAAGATATAAGAGAGTCCTATTCCGAGAGTCTTTATAATGGTGATGTATCTGGTCGGAAGAAATTGATTGATATGATGGTTCTTGATTGTTGTTTCATTCTGATTTTGTTCCTGGTGGTAGCTAGAAAAGTCAGCTACCCTGAGCGTGTGAAGGATCCTATTTTCGGAATGAAATGGATTTTAACGGCTAAAGGAGTGACCTACTACTTTTGGAGAATCAGGTTCCTTTCTTTCTTCTTCAAACTATTTATGACAAATCGAAGATTGGGACGTCAAGAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

213

Amino Acids

24.88

Weight (kDa)

8.94

Isoelectric Point (pI)

29.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 50 - 181 7.7e-34 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 393
AatII GACGTC 1 cut(s) 631
AccIII TCCGGA 1 cut(s) 171
AclWI GGATC 3 cut(s) 293, 506, 519
AcyI GRCGYC 1 cut(s) 628
AfiI CCNNNNNNNGG 1 cut(s) 521
AgsI TTSAA 2 cut(s) 260, 598
AjnI CCWGG 1 cut(s) 468
AluBI AGCT 4 cut(s) 112, 302, 479, 492
AluI AGCT 4 cut(s) 112, 302, 479, 492
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 160
AlwI GGATC 3 cut(s) 293, 506, 519
Ama87I CYCGRG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 171
AspS9I GGNCC 2 cut(s) 103, 221
AsuHPI GGTGA 1 cut(s) 410
AvaI CYCGRG 1 cut(s) 281
AvaII GGWCC 2 cut(s) 103, 221
BamHI GGATCC 1 cut(s) 511
BbsI GAAGAC 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 267
BccI CCATC 4 cut(s) 15, 168, 237, 427
BceAI ACGGC 1 cut(s) 558
BcgI CGANNNNNNTGC 2 cut(s) 254, 288
BciT130I CCWGG 1 cut(s) 470
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 2 cut(s) 480, 640
Bme1390I CCNGG 1 cut(s) 470
Bme18I GGWCC 2 cut(s) 103, 221
BmeT110I CYCGRG 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 103, 221
BmiI GGNNCC 3 cut(s) 105, 513, 581
BmrFI CCNGG 1 cut(s) 470
BmsI GCATC 1 cut(s) 156
BpiI GAAGAC 1 cut(s) 48
Bpu10I CCTNAGC 1 cut(s) 498
BpuEI CTTGAG 1 cut(s) 101
Bsa29I ATCGAT 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 628
BsaJI CCNNGG 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bsc4I CCNNNNNNNGG 1 cut(s) 521
Bse118I RCCGGY 1 cut(s) 128
BseAI TCCGGA 1 cut(s) 171
BseBI CCWGG 1 cut(s) 470
BseCI ATCGAT 1 cut(s) 274
BseDI CCNNGG 1 cut(s) 203
BseGI GGATG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 521
BseMII CTCAG 1 cut(s) 489
BshVI ATCGAT 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 267
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 2 cut(s) 129, 172
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 521
BsmAI GTCTC 1 cut(s) 160
BsmFI GGGAC 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 267
Bsp13I TCCGGA 1 cut(s) 171
Bsp143I GATC 2 cut(s) 285, 511
BspCNI CTCAG 1 cut(s) 490
BspDI ATCGAT 1 cut(s) 274
BspEI TCCGGA 1 cut(s) 171
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 3 cut(s) 105, 513, 581
BspPI GGATC 3 cut(s) 293, 506, 519
BsrFI RCCGGY 1 cut(s) 128
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 203
BssMI GATC 2 cut(s) 285, 511
BssNI GRCGYC 1 cut(s) 628
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 470
Bst4CI ACNGT 1 cut(s) 50
BstACI GRCGYC 1 cut(s) 628
BstDEI CTNAG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 301
BstKTI GATC 2 cut(s) 288, 514
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 2 cut(s) 285, 511
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNI CCWGG 1 cut(s) 470
BstSCI CCNGG 1 cut(s) 468
BstV2I GAAGAC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 285, 511
BstYI RGATCY 2 cut(s) 285, 511
Bsu15I ATCGAT 1 cut(s) 274
BsuTUI ATCGAT 1 cut(s) 274
BtsCI GGATG 1 cut(s) 301
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 1 cut(s) 348
CciI TCATGA 1 cut(s) 79
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 2 cut(s) 103, 221
ClaI ATCGAT 1 cut(s) 274
CseI GACGC 1 cut(s) 200
CviAII CATG 3 cut(s) 80, 233, 292
CviJI RGCY 7 cut(s) 112, 128, 302, 479, 492, 545, 639
CviKI_1 RGCY 7 cut(s) 112, 128, 302, 479, 492, 545, 639
DdeI CTNAG 1 cut(s) 498
DpnI GATC 2 cut(s) 287, 513
DpnII GATC 2 cut(s) 285, 511
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 103, 221
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 468
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 3 cut(s) 83, 236, 295
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 79, 232, 291
FokI GGATG 1 cut(s) 308
FspBI CTAG 2 cut(s) 480, 640
HapII CCGG 2 cut(s) 129, 172
HgaI GACGC 1 cut(s) 200
Hin1I GRCGYC 1 cut(s) 628
Hin1II CATG 3 cut(s) 83, 236, 295
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 6 cut(s) 156, 168, 256, 371, 385, 573
HpaII CCGG 2 cut(s) 129, 172
HphI GGTGA 1 cut(s) 410
Hpy188I TCNGA 6 cut(s) 165, 349, 382, 414, 459, 524
HpyAV CCTTC 3 cut(s) 304, 319, 502
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4IV ACGT 1 cut(s) 628
HpyCH4V TGCA 1 cut(s) 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 498
HpySE526I ACGT 1 cut(s) 628
Hsp92I GRCGYC 1 cut(s) 628
Hsp92II CATG 3 cut(s) 83, 236, 295
Kpn2I TCCGGA 1 cut(s) 171
Kzo9I GATC 2 cut(s) 285, 511
LpnPI CCDG 8 cut(s) 78, 142, 185, 393, 455, 482, 510, 562
LweI GCATC 1 cut(s) 156
MaeI CTAG 2 cut(s) 480, 640
MaeII ACGT 1 cut(s) 628
MaeIII GTNAC 1 cut(s) 553
MalI GATC 2 cut(s) 287, 513
MboI GATC 2 cut(s) 285, 511
MboII GAAGA 9 cut(s) 26, 53, 280, 368, 371, 427, 583, 586, 630
MflI RGATCY 2 cut(s) 285, 511
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 2 cut(s) 87, 419
MlyI GAGTC 3 cut(s) 162, 380, 394
MmeI TCCRAC 2 cut(s) 333, 392
MnlI CCTC 3 cut(s) 18, 89, 628
MroI TCCGGA 1 cut(s) 171
MseI TTAA 2 cut(s) 86, 539
MspI CCGG 2 cut(s) 129, 172
MspR9I CCNGG 1 cut(s) 470
MvaI CCWGG 1 cut(s) 470
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 2 cut(s) 285, 511
NlaIII CATG 3 cut(s) 83, 236, 295
NlaIV GGNNCC 3 cut(s) 105, 513, 581
NmuCI GTSAC 1 cut(s) 553
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 3 cut(s) 156, 256, 573
PleI GAGTC 3 cut(s) 162, 379, 393
PpsI GAGTC 3 cut(s) 162, 379, 393
PsiI TTATAA 1 cut(s) 393
Psp6I CCWGG 1 cut(s) 468
PspGI CCWGG 1 cut(s) 468
PspN4I GGNNCC 3 cut(s) 105, 513, 581
PspPI GGNCC 2 cut(s) 103, 221
PsrI GAACNNNNNNTAC 2 cut(s) 167, 199
PsuI RGATCY 2 cut(s) 285, 511
SaqAI TTAA 2 cut(s) 86, 539
Sau3AI GATC 2 cut(s) 285, 511
Sau96I GGNCC 2 cut(s) 103, 221
SchI GAGTC 3 cut(s) 162, 380, 394
ScrFI CCNGG 1 cut(s) 470
SduI GDGCHC 1 cut(s) 267
SetI ASST 7 cut(s) 114, 304, 481, 494, 560, 581, 631
SfaNI GCATC 1 cut(s) 156
SinI GGWCC 2 cut(s) 103, 221
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
Sse9I AATT 2 cut(s) 87, 419
SspMI CTAG 2 cut(s) 480, 640
StyD4I CCNGG 1 cut(s) 468
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 50
TaiI ACGT 1 cut(s) 631
TaqI TCGA 2 cut(s) 274, 616
TaqII GACCGA 2 cut(s) 91, 209
TasI AATT 2 cut(s) 87, 419
TfiI GAWTC 3 cut(s) 156, 256, 573
Tru1I TTAA 2 cut(s) 86, 539
Tru9I TTAA 2 cut(s) 86, 539
TscAI CASTG 1 cut(s) 348
TseFI GTSAC 1 cut(s) 553
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 7 cut(s) 17, 54, 280, 312, 338, 442, 542
TspRI CASTG 1 cut(s) 348
VpaK11BI GGWCC 2 cut(s) 103, 221
XspI CTAG 2 cut(s) 480, 640
ZraI GACGTC 1 cut(s) 629
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.