Rh3BG095300

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002062
Physical Location & Seq
Reverse (-)
7598399 .. 7604461
6063 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG095300.1

Sequence Viewer

Length: 1329 bp
ATGGAGGAAGAGAGCATACTGCCATTACAATTGCAGCCACAAACAATGTTCAATTGGACCACATCGTTGGAGCAAAGAATCGCAGAAACAGAATGGTTATTACACCCATCAGCCGGAAACGAGTCTTGTTGCATCTTCAGAGTGCCTCAACTCTATAAGGATACAAACAAGAAGTCCTACGAGCCTCGTATAGTCTCCATTGGTCCATATCACCACGGTAAAAAACATTTGAAGATGATGCAGCAGCACAAATGGAGATTTCTTCACGATCTCCTTACTCGAACACCATCAACTGGCTCAAGACTTGATGACTACCTGCGCGAGGTAACATCAATGGAAGAAGTCATACGAAATTGCTATTCAGAGACACTCAAATTTAGCAACCGAGAGCTTGTTGAGATGATGGTGTTGGATGGTCTCTTTATTATTGAAGTGTTTTGCAAGATAGAAAAATTATCACCAATGGGTAATGGTGACCCCATCTTCAACATGGCATGGGTCATCATTCAGCTCATCCAAGATCTTTTACTGTTAGAGAACCAAATTCCATTCATGGTTCTTCAAAAATTGTTTGATACATCAAGATCTTCCAGAAAAGATAGTAACTCAACACTTGCCGAACTTTCTCTGAAATTCTTTGGCAACTATGAATTACGAATACCTTATGGAAATGCTCAAGGAAGACATTTTCTTGATCTACTTCGCTTGAATTTTATCCCTAGGGAAATGAGGCTCCCCAGTAAACCTCGAGAAGATTATGAAGTTCAATTATGTATCCAGTCAGCTACAAAGCTTCATCTAGCTGGAGTAAAGTTCAAGCCAAGGAAGGCAAGGAGCTTCCTAGATATCAAATTTTCTGATGGAGTCCTTGAAATCCCAGAGGTAAGACTAGGCGATCACTCTACCGATCTATTCCTGAATTTCATTGCATTTGAACAATGCTACTATCATTCTCCAAGACACATAACTACTTATGTTGTATTCATGTGTTCCCTAATCCGCACGCCTAAGGACGTAGAGTTTCTCTGTGATAATAGTATTATCGAGAACTATTCATCTTATGAGGATATTGCAATTTTTTTCAGAAACGTGGGCAAAGGTGTGACTTTTGATTTTGAACAGGGTCACCTACTGAATCTGTTCAACGATGTAAATGAGTACCAAAAAAATATTTGTCACGTGCGATGGGCAGAATTTAGGTTCAAGTACTTCGATTCACCTTGGTCTTTCTTGTCTGCTTTAGCTGCTGTCATACTCTTAATATTCACTGCAATTCAAGCCTTCTTTGCTGTTTATGCATATTTGTTCCCACCAGAATCTGGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

442

Amino Acids

51.77

Weight (kDa)

6.37

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 45 - 422 9.7e-119 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 324
AccB7I CCANNNNNTGG 2 cut(s) 293, 1319
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 1000
AcsI RAATTY 7 cut(s) 374, 543, 632, 709, 851, 919, 1193
AcuI CTGAAG 1 cut(s) 121
AcvI CACGTG 1 cut(s) 1180
AfaI GTAC 2 cut(s) 1160, 1208
AfiI CCNNNNNNNGG 4 cut(s) 113, 293, 322, 1319
AluBI AGCT 7 cut(s) 391, 511, 785, 793, 803, 837, 1244
AluI AGCT 7 cut(s) 391, 511, 785, 793, 803, 837, 1244
Alw26I GTCTC 3 cut(s) 199, 359, 422
AlwNI CAGNNNCTG 1 cut(s) 1319
Ama87I CYCGRG 1 cut(s) 747
ApeKI GCWGC 4 cut(s) 34, 241, 244, 1244
ApoI RAATTY 7 cut(s) 374, 543, 632, 709, 851, 919, 1193
ArsI GACNNNNNNTTYG 2 cut(s) 158, 190
Asp700I GAANNNNTTC 1 cut(s) 1139
AspA2I CCTAGG 1 cut(s) 719
AspLEI GCGC 1 cut(s) 321
AspS9I GGNCC 2 cut(s) 57, 203
AsuHPI GGTGA 5 cut(s) 203, 450, 485, 1118, 1209
AvaI CYCGRG 1 cut(s) 747
AvaII GGWCC 2 cut(s) 57, 203
AvrII CCTAGG 1 cut(s) 719
AxyI CCTNAGG 1 cut(s) 1008
BarI GAAGNNNNNNTAC 3 cut(s) 32, 330, 362
BbrPI CACGTG 1 cut(s) 1180
BbsI GAAGAC 1 cut(s) 688
BbvI GCAGC 4 cut(s) 46, 253, 256, 1231
BccI CCATC 7 cut(s) 115, 295, 397, 407, 488, 854, 1179
BciVI GTATCC 2 cut(s) 154, 785
BcoDI GTCTC 3 cut(s) 199, 359, 422
BfaI CTAG 4 cut(s) 720, 800, 842, 890
BfuAI ACCTGC 1 cut(s) 324
BfuI GTATCC 2 cut(s) 154, 785
BglII AGATCT 2 cut(s) 520, 584
BisI GCNGC 4 cut(s) 35, 242, 245, 1245
BlnI CCTAGG 1 cut(s) 719
BlsI GCNGC 4 cut(s) 36, 243, 246, 1246
BmcAI AGTACT 1 cut(s) 1208
Bme18I GGWCC 2 cut(s) 57, 203
BmeT110I CYCGRG 1 cut(s) 747
BmgT120I GGNCC 2 cut(s) 57, 203
BmiI GGNNCC 1 cut(s) 734
BmrI ACTGGG 1 cut(s) 732
BmsI GCATC 2 cut(s) 141, 228
BmuI ACTGGG 1 cut(s) 732
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 1 cut(s) 825
BpuEI CTTGAG 2 cut(s) 283, 660
BsaAI YACGTR 1 cut(s) 1180
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 4 cut(s) 214, 719, 821, 1220
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 293, 322, 1319
Bse1I ACTGG 3 cut(s) 298, 738, 778
Bse21I CCTNAGG 1 cut(s) 1008
Bse3DI GCAATG 1 cut(s) 924
BseDI CCNNGG 4 cut(s) 214, 719, 821, 1220
BseGI GGATG 2 cut(s) 418, 513
BseLI CCNNNNNNNGG 4 cut(s) 113, 293, 322, 1319
BseMI GCAATG 1 cut(s) 924
BseNI ACTGG 3 cut(s) 298, 738, 778
BseXI GCAGC 4 cut(s) 46, 253, 256, 1231
Bsh1236I CGCG 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 747
BsiSI CCGG 1 cut(s) 114
BslI CCNNNNNNNGG 4 cut(s) 113, 293, 322, 1319
BsmAI GTCTC 3 cut(s) 199, 359, 422
Bso31I GGTCTC 1 cut(s) 422
BsoBI CYCGRG 1 cut(s) 747
Bsp143I GATC 6 cut(s) 268, 520, 584, 694, 895, 907
BspACI CCGC 1 cut(s) 1000
BspFNI CGCG 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 734
BspMI ACCTGC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 924
BsrI ACTGG 3 cut(s) 298, 738, 778
BssECI CCNNGG 4 cut(s) 214, 719, 821, 1220
BssMI GATC 6 cut(s) 268, 520, 584, 694, 895, 907
BssT1I CCWWGG 3 cut(s) 719, 821, 1220
Bst4CI ACNGT 2 cut(s) 218, 531
Bst6I CTCTTC 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 1180
BstC8I GCNNGC 1 cut(s) 1004
BstDEI CTNAG 1 cut(s) 1008
BstDSI CCRYGG 1 cut(s) 214
BstEII GGTNACC 2 cut(s) 473, 1124
BstENI CCTNNNNNAGG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 418, 513
BstFNI CGCG 1 cut(s) 321
BstHHI GCGC 1 cut(s) 321
BstKTI GATC 6 cut(s) 271, 523, 587, 697, 898, 910
BstMAI GTCTC 3 cut(s) 199, 359, 422
BstMBI GATC 6 cut(s) 268, 520, 584, 694, 895, 907
BstMWI GCNNNNNNNGC 4 cut(s) 1244, 1277, 1286, 1295
BstPI GGTNACC 2 cut(s) 473, 1124
BstUI CGCG 1 cut(s) 321
BstV1I GCAGC 4 cut(s) 46, 253, 256, 1231
BstV2I GAAGAC 1 cut(s) 688
BstX2I RGATCY 2 cut(s) 520, 584
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 2 cut(s) 520, 584
Bsu36I CCTNAGG 1 cut(s) 1008
BsuI GTATCC 2 cut(s) 154, 785
BtgI CCRYGG 1 cut(s) 214
BtgZI GCGATG 1 cut(s) 1198
BtsCI GGATG 2 cut(s) 418, 513
BtsI GCAGTG 1 cut(s) 1266
BtsIMutI CAGTG 1 cut(s) 1266
BveI ACCTGC 1 cut(s) 324
Cac8I GCNNGC 1 cut(s) 1004
CaiI CAGNNNCTG 1 cut(s) 1319
CfoI GCGC 1 cut(s) 321
Cfr13I GGNCC 2 cut(s) 57, 203
Csp6I GTAC 2 cut(s) 1159, 1207
CviAII CATG 4 cut(s) 490, 495, 553, 985
CviQI GTAC 2 cut(s) 1159, 1207
DdeI CTNAG 1 cut(s) 1008
DpnI GATC 6 cut(s) 270, 522, 586, 696, 897, 909
DpnII GATC 6 cut(s) 268, 520, 584, 694, 895, 907
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 719, 821, 1220
Eco31I GGTCTC 1 cut(s) 422
Eco32I GATATC 1 cut(s) 847
Eco47I GGWCC 2 cut(s) 57, 203
Eco57I CTGAAG 1 cut(s) 121
Eco72I CACGTG 1 cut(s) 1180
Eco81I CCTNAGG 1 cut(s) 1008
Eco88I CYCGRG 1 cut(s) 747
Eco91I GGTNACC 2 cut(s) 473, 1124
EcoNI CCTNNNNNAGG 1 cut(s) 320
EcoO65I GGTNACC 2 cut(s) 473, 1124
EcoRV GATATC 1 cut(s) 847
EcoT14I CCWWGG 3 cut(s) 719, 821, 1220
EcoT22I ATGCAT 1 cut(s) 1300
ErhI CCWWGG 3 cut(s) 719, 821, 1220
FaeI CATG 4 cut(s) 493, 498, 556, 988
FatI CATG 4 cut(s) 489, 494, 552, 984
Fnu4HI GCNGC 4 cut(s) 35, 242, 245, 1245
FokI GGATG 2 cut(s) 425, 500
Fsp4HI GCNGC 4 cut(s) 35, 242, 245, 1245
FspBI CTAG 4 cut(s) 720, 800, 842, 890
GlaI GCGC 1 cut(s) 320
GluI GCNGC 4 cut(s) 35, 242, 245, 1245
GsuI CTGGAG 1 cut(s) 825
HapII CCGG 1 cut(s) 114
HhaI GCGC 1 cut(s) 321
Hin1II CATG 4 cut(s) 493, 498, 556, 988
Hin6I GCGC 1 cut(s) 319
HinP1I GCGC 1 cut(s) 319
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 6 cut(s) 78, 122, 864, 1135, 1214, 1316
HpaII CCGG 1 cut(s) 114
HphI GGTGA 5 cut(s) 203, 450, 485, 1118, 1209
Hpy166II GTNNAC 1 cut(s) 743
Hpy188I TCNGA 5 cut(s) 140, 364, 630, 859, 1085
Hpy188III TCNNGA 8 cut(s) 266, 300, 582, 591, 692, 749, 916, 1045
Hpy8I GTNNAC 1 cut(s) 743
HpyAV CCTTC 2 cut(s) 820, 1291
HpyCH4III ACNGT 2 cut(s) 218, 531
HpyCH4IV ACGT 3 cut(s) 1014, 1089, 1179
HpyCH4V TGCA 8 cut(s) 34, 132, 241, 441, 929, 1073, 1271, 1298
HpyF10VI GCNNNNNNNGC 4 cut(s) 1244, 1277, 1286, 1295
HpyF3I CTNAG 1 cut(s) 1008
HpySE526I ACGT 3 cut(s) 1014, 1089, 1179
Hsp92II CATG 4 cut(s) 493, 498, 556, 988
HspAI GCGC 1 cut(s) 319
Kzo9I GATC 6 cut(s) 268, 520, 584, 694, 895, 907
LmnI GCTCC 3 cut(s) 70, 738, 834
Lsp1109I GCAGC 4 cut(s) 46, 253, 256, 1231
LweI GCATC 2 cut(s) 141, 228
MaeI CTAG 4 cut(s) 720, 800, 842, 890
MaeII ACGT 3 cut(s) 1014, 1089, 1179
MaeIII GTNAC 6 cut(s) 325, 473, 602, 1102, 1124, 1175
MalI GATC 6 cut(s) 270, 522, 586, 696, 897, 909
MboI GATC 6 cut(s) 268, 520, 584, 694, 895, 907
MfeI CAATTG 2 cut(s) 29, 52
MflI RGATCY 2 cut(s) 520, 584
MlyI GAGTC 2 cut(s) 131, 873
MmeI TCCRAC 2 cut(s) 48, 390
MnlI CCTC 7 cut(s) 156, 195, 316, 723, 756, 874, 1057
Mph1103I ATGCAT 1 cut(s) 1300
MroXI GAANNNNTTC 1 cut(s) 1139
MseI TTAA 1 cut(s) 1259
MspI CCGG 1 cut(s) 114
MunI CAATTG 2 cut(s) 29, 52
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 4 cut(s) 1244, 1277, 1286, 1295
NdeII GATC 6 cut(s) 268, 520, 584, 694, 895, 907
NlaIII CATG 4 cut(s) 493, 498, 556, 988
NlaIV GGNNCC 1 cut(s) 734
NmuCI GTSAC 4 cut(s) 473, 1102, 1124, 1175
NsiI ATGCAT 1 cut(s) 1300
PaeR7I CTCGAG 1 cut(s) 747
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 4 cut(s) 78, 1135, 1214, 1316
PflMI CCANNNNNTGG 2 cut(s) 293, 1319
PkrI GCNGC 4 cut(s) 36, 243, 246, 1246
PleI GAGTC 2 cut(s) 130, 872
PmaCI CACGTG 1 cut(s) 1180
PmlI CACGTG 1 cut(s) 1180
PpsI GAGTC 2 cut(s) 130, 872
Ppu21I YACGTR 1 cut(s) 1180
PspCI CACGTG 1 cut(s) 1180
PspEI GGTNACC 2 cut(s) 473, 1124
PspN4I GGNNCC 1 cut(s) 734
PspPI GGNCC 2 cut(s) 57, 203
PstNI CAGNNNCTG 1 cut(s) 1319
PsuI RGATCY 2 cut(s) 520, 584
RsaI GTAC 2 cut(s) 1160, 1208
RsaNI GTAC 2 cut(s) 1159, 1207
SaqAI TTAA 1 cut(s) 1259
SatI GCNGC 4 cut(s) 35, 242, 245, 1245
Sau3AI GATC 6 cut(s) 268, 520, 584, 694, 895, 907
Sau96I GGNCC 2 cut(s) 57, 203
ScaI AGTACT 1 cut(s) 1208
SchI GAGTC 2 cut(s) 131, 873
SfaNI GCATC 2 cut(s) 141, 228
Sfr274I CTCGAG 1 cut(s) 747
SinI GGWCC 2 cut(s) 57, 203
SlaI CTCGAG 1 cut(s) 747
SmlI CTYRAG 3 cut(s) 298, 675, 747
SmoI CTYRAG 3 cut(s) 298, 675, 747
SsiI CCGC 1 cut(s) 1000
SspI AATATT 2 cut(s) 1171, 1263
SspMI CTAG 4 cut(s) 720, 800, 842, 890
StyI CCWWGG 3 cut(s) 719, 821, 1220
TaaI ACNGT 2 cut(s) 218, 531
TaiI ACGT 3 cut(s) 1017, 1092, 1182
TaqI TCGA 4 cut(s) 280, 748, 1044, 1212
TatI WGTACW 1 cut(s) 1206
TfiI GAWTC 4 cut(s) 78, 1135, 1214, 1316
Tru1I TTAA 1 cut(s) 1259
Tru9I TTAA 1 cut(s) 1259
TscAI CASTG 1 cut(s) 1273
TseFI GTSAC 4 cut(s) 473, 1102, 1124, 1175
TseI GCWGC 4 cut(s) 34, 241, 244, 1244
Tsp45I GTSAC 4 cut(s) 473, 1102, 1124, 1175
TspDTI ATGAA 7 cut(s) 541, 663, 774, 785, 913, 973, 1044
TspRI CASTG 1 cut(s) 1273
Van91I CCANNNNNTGG 2 cut(s) 293, 1319
VpaK11BI GGWCC 2 cut(s) 57, 203
XagI CCTNNNNNAGG 1 cut(s) 320
XapI RAATTY 7 cut(s) 374, 543, 632, 709, 851, 919, 1193
XcmI CCANNNNNNNNNTGG 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 747
XmaJI CCTAGG 1 cut(s) 719
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 4 cut(s) 720, 800, 842, 890
ZrmI AGTACT 1 cut(s) 1208
Zsp2I ATGCAT 1 cut(s) 1300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.