FvH4_1g13901

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002062
Physical Location & Seq
Reverse (-)
7644678 .. 7646647
1970 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g13901.t1

Sequence Viewer

Length: 1464 bp
ATGGCGAATGGAGGAGGAGATCAATCTGTGATTACAATTGCAGCCACAAGTAACATTCAGATGACATCATTGGAGCAAAGAATAGAGGAAACAAAATGGCTACTGCATCCATCAGCTGGTAACAGTTCATGTTGCATCTTCAAAGTACCTCGATGCTTTGTGGAAATAAACAAAAACAACTACCAGCCTCATATAGTGTCCTTTGGTCCTTATCACCATGGAAACGAACATTTAGAGATGATGCAACAACACAAATGGAGATTTCTTCATGATCTTCTTGCACGAACACCGCCAACTGGTCCGAGACTTGATGACTACTTGCAGGCTGTTGCAGAAAAGGAAGAAGATATAAGAGGGTGCTACTCAGTTACCTTAAGTTTATCCAGCCATGCTCTAGCTGAAATGATGGTGCTGGATGGTCTCTTCATTGTTGAACTTTTCTGCAAAGTTGGACTATTATCGCCAAGCGATCCAGATGACTCCATCTTTAACTTGTCATGGATATTTCCTAATCTCATAAGAGATCTTCTAAGGTTGGAAAATCAAATTCCTTTCTTTGTTCTTCAAATGTTATTTGATAAATCAGAAACTTCAAGAAAAGATAGTGACTCTTCCCTCGCAAAACTTGCTCTGGAATTCTTTAATTATGCAATCAATAGACCTGATGAAGTCTTGCAACAACATTTTAGTGTTGAAGGAAAACACCTACTTGATTTACTTCGCCTGAGCTTTGTCCCATCTTCACAAGTAAAGCCTAAAAAGATTCCTGCATTGGTTAAATTACTCCAATTGGTGAGGAAACCTCTAAGAGGAATCAAATGCAGCACAAAGAAGGCAGTGAATAAGTTTCTAGCAGGGTACAATACAAAGAGTGGAGATACATCTCTGCCGGTACAATTCATCCAATCAGCGAAAAAGCTTCATCTGGCTGGAATCAAATTCAAAAAGAGGGATGCAATGAGCTTCTTGGATATCAAATTTGACAAGGGAGTTCTCGAAATTCCACATATGTCACTCGATGATCTGCATACCGACATCTTCTTGAATTTTGTTGCATTCGAAGCATGTTACTCTCATTGCTCAAAGGACATAACCACCTATGCTGCATTCATGAGTTGTCTCATCCGAACCCCTGCAGATGCAACATTTCTATGTGACAACAACATTATTGAGAATTATCTTGGAACTGACGATGAGGTTGCTCATTTCTTCAGAAACCTAGGCAAAGATGTGCCGTTTGATATTGATGAGAGCTATCTGCAGAAGCTGTTCAAGGATGTGAATGAGTACCACAGAAATGTTTGGCATGTTCGATGGGCAGGTTTCAGATTCAAGTATTTTGATACACCATGGTCTTTCTTGTCTGCGTTAGCAGCTGTCATACTCCTACTATTCACCGCAATTCAGGTATACTTTGCGGTATATGCTTATGTACATCCACTGGACTCCGGTGGAGTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

488

Amino Acids

55.5

Weight (kDa)

6.52

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 46 - 465 5.1e-121 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1310
AccB7I CCANNNNNTGG 1 cut(s) 116
AccI GTMKAC 1 cut(s) 1410
AciI CCGC 3 cut(s) 290, 1398, 1418
AclWI GGATC 1 cut(s) 464
AcsI RAATTY 6 cut(s) 546, 635, 938, 977, 999, 1045
AcuI CTGAAG 1 cut(s) 1195
AfaI GTAC 5 cut(s) 147, 860, 894, 1289, 1434
AfiI CCNNNNNNNGG 3 cut(s) 116, 296, 809
AflII CTTAAG 1 cut(s) 373
AgsI TTSAA 9 cut(s) 142, 434, 566, 594, 695, 943, 1045, 1273, 1333
AluBI AGCT 8 cut(s) 116, 398, 729, 919, 963, 1254, 1267, 1376
AluI AGCT 8 cut(s) 116, 398, 729, 919, 963, 1254, 1267, 1376
Alw26I GTCTC 3 cut(s) 298, 425, 1124
AlwI GGATC 1 cut(s) 464
AlwNI CAGNNNCTG 1 cut(s) 1267
ApeKI GCWGC 4 cut(s) 41, 822, 1103, 1373
ApoI RAATTY 6 cut(s) 546, 635, 938, 977, 999, 1045
Asp700I GAANNNNTTC 1 cut(s) 1268
AspA2I CCTAGG 1 cut(s) 1219
AspS9I GGNCC 2 cut(s) 206, 299
AsuHPI GGTGA 3 cut(s) 206, 805, 1387
AsuII TTCGAA 1 cut(s) 1059
AvaII GGWCC 2 cut(s) 206, 299
AvrII CCTAGG 1 cut(s) 1219
BbvI GCAGC 4 cut(s) 53, 834, 1090, 1385
BccI CCATC 6 cut(s) 118, 400, 410, 491, 745, 1308
BceAI ACGGC 1 cut(s) 1219
BcgI CGANNNNNNTGC 2 cut(s) 1181, 1215
BcoDI GTCTC 3 cut(s) 298, 425, 1124
BfaI CTAG 3 cut(s) 395, 851, 1220
BfmI CTRYAG 2 cut(s) 1134, 1259
BfrI CTTAAG 1 cut(s) 373
BfuAI ACCTGC 1 cut(s) 1310
BglII AGATCT 1 cut(s) 523
BisI GCNGC 4 cut(s) 42, 823, 1104, 1374
BlnI CCTAGG 1 cut(s) 1219
BlsI GCNGC 4 cut(s) 43, 824, 1105, 1375
Bme18I GGWCC 2 cut(s) 206, 299
BmgT120I GGNCC 2 cut(s) 206, 299
BmsI GCATC 6 cut(s) 115, 143, 144, 231, 943, 1129
BplI GAGNNNNNCTC 2 cut(s) 787, 819
Bpu10I CCTNAGC 1 cut(s) 725
Bpu14I TTCGAA 1 cut(s) 1059
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 3 cut(s) 217, 1219, 1349
BsaWI WCCGGW 1 cut(s) 1448
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 296, 809
Bse118I RCCGGY 1 cut(s) 889
Bse1I ACTGG 2 cut(s) 301, 1446
Bse3DI GCAATG 2 cut(s) 963, 1075
BseDI CCNNGG 3 cut(s) 217, 1219, 1349
BseGI GGATG 7 cut(s) 106, 421, 900, 958, 1122, 1282, 1435
BseLI CCNNNNNNNGG 3 cut(s) 116, 296, 809
BseMI GCAATG 2 cut(s) 963, 1075
BseMII CTCAG 2 cut(s) 378, 716
BseNI ACTGG 2 cut(s) 301, 1446
BseRI GAGGAG 2 cut(s) 27, 30
BseXI GCAGC 4 cut(s) 53, 834, 1090, 1385
BsiSI CCGG 2 cut(s) 890, 1449
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 3 cut(s) 116, 296, 809
BsmAI GTCTC 3 cut(s) 298, 425, 1124
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 2 cut(s) 1055, 1106
Bso31I GGTCTC 1 cut(s) 425
Bsp119I TTCGAA 1 cut(s) 1059
Bsp1407I TGTACA 1 cut(s) 1432
Bsp143I GATC 5 cut(s) 19, 271, 469, 523, 1021
Bsp19I CCATGG 2 cut(s) 217, 1349
BspACI CCGC 3 cut(s) 290, 1398, 1418
BspCNI CTCAG 2 cut(s) 377, 717
BspHI TCATGA 2 cut(s) 268, 1110
BspMAI CTGCAG 2 cut(s) 1138, 1263
BspMI ACCTGC 1 cut(s) 1310
BspPI GGATC 1 cut(s) 464
BspT104I TTCGAA 1 cut(s) 1059
BspTI CTTAAG 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 425
BsrDI GCAATG 2 cut(s) 963, 1075
BsrFI RCCGGY 1 cut(s) 889
BsrGI TGTACA 1 cut(s) 1432
BsrI ACTGG 2 cut(s) 301, 1446
BssAI RCCGGY 1 cut(s) 889
BssECI CCNNGG 3 cut(s) 217, 1219, 1349
BssMI GATC 5 cut(s) 19, 271, 469, 523, 1021
BssNAI GTATAC 1 cut(s) 1411
BssT1I CCWWGG 3 cut(s) 217, 1219, 1349
Bst1107I GTATAC 1 cut(s) 1411
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 428, 616
BstAFI CTTAAG 1 cut(s) 373
BstAPI GCANNNNNTGC 1 cut(s) 626
BstAUI TGTACA 1 cut(s) 1432
BstBI TTCGAA 1 cut(s) 1059
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 4 cut(s) 364, 530, 725, 806
BstDSI CCRYGG 2 cut(s) 217, 1349
BstENI CCTNNNNNAGG 1 cut(s) 807
BstF5I GGATG 7 cut(s) 106, 421, 900, 958, 1122, 1282, 1435
BstKTI GATC 5 cut(s) 22, 274, 472, 526, 1024
BstMAI GTCTC 3 cut(s) 298, 425, 1124
BstMBI GATC 5 cut(s) 19, 271, 469, 523, 1021
BstMWI GCNNNNNNNGC 4 cut(s) 626, 1061, 1373, 1424
BstNSI RCATGY 2 cut(s) 1068, 1310
BstSFI CTRYAG 2 cut(s) 1134, 1259
BstV1I GCAGC 4 cut(s) 53, 834, 1090, 1385
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BstZ17I GTATAC 1 cut(s) 1411
BtgI CCRYGG 2 cut(s) 217, 1349
BtsCI GGATG 7 cut(s) 106, 421, 900, 958, 1122, 1282, 1435
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 2 cut(s) 843, 1439
BveI ACCTGC 1 cut(s) 1310
Cac8I GCNNGC 1 cut(s) 324
CaiI CAGNNNCTG 1 cut(s) 1267
CciI TCATGA 2 cut(s) 268, 1110
Cfr10I RCCGGY 1 cut(s) 889
Cfr13I GGNCC 2 cut(s) 206, 299
Csp6I GTAC 5 cut(s) 146, 859, 893, 1288, 1433
CviAII CATG 9 cut(s) 129, 218, 269, 389, 498, 1065, 1111, 1307, 1350
CviQI GTAC 5 cut(s) 146, 859, 893, 1288, 1433
DdeI CTNAG 4 cut(s) 364, 530, 725, 806
DpnI GATC 5 cut(s) 21, 273, 471, 525, 1023
DpnII GATC 5 cut(s) 19, 271, 469, 523, 1021
Eam1104I CTCTTC 2 cut(s) 428, 616
EarI CTCTTC 2 cut(s) 428, 616
Eco130I CCWWGG 3 cut(s) 217, 1219, 1349
Eco31I GGTCTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 2 cut(s) 206, 299
Eco57I CTGAAG 1 cut(s) 1195
EcoNI CCTNNNNNAGG 1 cut(s) 807
EcoRI GAATTC 1 cut(s) 635
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 3 cut(s) 217, 1219, 1349
ErhI CCWWGG 3 cut(s) 217, 1219, 1349
FaeI CATG 9 cut(s) 132, 221, 272, 392, 501, 1068, 1114, 1310, 1353
FaqI GGGAC 1 cut(s) 719
FatI CATG 9 cut(s) 128, 217, 268, 388, 497, 1064, 1110, 1306, 1349
FauNDI CATATG 1 cut(s) 1008
FblI GTMKAC 1 cut(s) 1410
Fnu4HI GCNGC 4 cut(s) 42, 823, 1104, 1374
FokI GGATG 7 cut(s) 93, 428, 887, 965, 1109, 1289, 1422
Fsp4HI GCNGC 4 cut(s) 42, 823, 1104, 1374
FspBI CTAG 3 cut(s) 395, 851, 1220
GluI GCNGC 4 cut(s) 42, 823, 1104, 1374
HapII CCGG 2 cut(s) 890, 1449
Hin1II CATG 9 cut(s) 132, 221, 272, 392, 501, 1068, 1114, 1310, 1353
HindIII AAGCTT 1 cut(s) 917
HinfI GANTC 7 cut(s) 479, 608, 763, 813, 933, 1329, 1445
HpaII CCGG 2 cut(s) 890, 1449
HphI GGTGA 3 cut(s) 206, 805, 1387
Hpy166II GTNNAC 1 cut(s) 1411
Hpy188I TCNGA 6 cut(s) 60, 303, 586, 1127, 1214, 1328
Hpy188III TCNNGA 7 cut(s) 269, 473, 594, 632, 995, 1042, 1111
Hpy8I GTNNAC 1 cut(s) 1411
HpyAV CCTTC 2 cut(s) 689, 826
HpyCH4III ACNGT 1 cut(s) 125
HpyF10VI GCNNNNNNNGC 4 cut(s) 626, 1061, 1373, 1424
HpyF3I CTNAG 4 cut(s) 364, 530, 725, 806
Hsp92II CATG 9 cut(s) 132, 221, 272, 392, 501, 1068, 1114, 1310, 1353
Kzo9I GATC 5 cut(s) 19, 271, 469, 523, 1021
LmnI GCTCC 1 cut(s) 73
Lsp1109I GCAGC 4 cut(s) 53, 834, 1090, 1385
LweI GCATC 6 cut(s) 115, 143, 144, 231, 943, 1129
MaeI CTAG 3 cut(s) 395, 851, 1220
MaeIII GTNAC 7 cut(s) 50, 119, 367, 605, 1011, 1067, 1154
MalI GATC 5 cut(s) 21, 273, 471, 525, 1023
MboI GATC 5 cut(s) 19, 271, 469, 523, 1021
MfeI CAATTG 2 cut(s) 36, 788
MflI RGATCY 1 cut(s) 523
MlyI GAGTC 3 cut(s) 473, 602, 1439
MmeI TCCRAC 2 cut(s) 430, 516
MroXI GAANNNNTTC 1 cut(s) 1268
MseI TTAA 4 cut(s) 374, 489, 642, 777
MslI CAYNNNNRTG 4 cut(s) 59, 687, 1150, 1296
MspA1I CMGCKG 2 cut(s) 116, 1376
MspCI CTTAAG 1 cut(s) 373
MspI CCGG 2 cut(s) 890, 1449
MunI CAATTG 2 cut(s) 36, 788
Mva1269I GAATGC 2 cut(s) 1055, 1106
MwoI GCNNNNNNNGC 4 cut(s) 626, 1061, 1373, 1424
NcoI CCATGG 2 cut(s) 217, 1349
NdeI CATATG 1 cut(s) 1008
NdeII GATC 5 cut(s) 19, 271, 469, 523, 1021
NlaIII CATG 9 cut(s) 132, 221, 272, 392, 501, 1068, 1114, 1310, 1353
NmuCI GTSAC 3 cut(s) 605, 1011, 1154
NspI RCATGY 2 cut(s) 1068, 1310
NspV TTCGAA 1 cut(s) 1059
PagI TCATGA 2 cut(s) 268, 1110
PctI GAATGC 2 cut(s) 1055, 1106
PdmI GAANNNNTTC 1 cut(s) 1268
PfeI GAWTC 4 cut(s) 763, 813, 933, 1329
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 4 cut(s) 43, 824, 1105, 1375
PleI GAGTC 3 cut(s) 473, 602, 1439
PpsI GAGTC 3 cut(s) 473, 602, 1439
PspPI GGNCC 2 cut(s) 206, 299
PstI CTGCAG 2 cut(s) 1138, 1263
PstNI CAGNNNCTG 1 cut(s) 1267
PsuI RGATCY 1 cut(s) 523
PvuII CAGCTG 2 cut(s) 116, 1376
RsaI GTAC 5 cut(s) 147, 860, 894, 1289, 1434
RsaNI GTAC 5 cut(s) 146, 859, 893, 1288, 1433
RseI CAYNNNNRTG 4 cut(s) 59, 687, 1150, 1296
SaqAI TTAA 4 cut(s) 374, 489, 642, 777
SatI GCNGC 4 cut(s) 42, 823, 1104, 1374
Sau3AI GATC 5 cut(s) 19, 271, 469, 523, 1021
Sau96I GGNCC 2 cut(s) 206, 299
SchI GAGTC 3 cut(s) 473, 602, 1439
SfaNI GCATC 6 cut(s) 115, 143, 144, 231, 943, 1129
SfcI CTRYAG 2 cut(s) 1134, 1259
SfuI TTCGAA 1 cut(s) 1059
SinI GGWCC 2 cut(s) 206, 299
SmiMI CAYNNNNRTG 4 cut(s) 59, 687, 1150, 1296
SmlI CTYRAG 1 cut(s) 373
SmoI CTYRAG 1 cut(s) 373
SsiI CCGC 3 cut(s) 290, 1398, 1418
SspMI CTAG 3 cut(s) 395, 851, 1220
StyI CCWWGG 3 cut(s) 217, 1219, 1349
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 5 cut(s) 151, 996, 1017, 1059, 1312
TatI WGTACW 1 cut(s) 1432
TfiI GAWTC 4 cut(s) 763, 813, 933, 1329
Tru1I TTAA 4 cut(s) 374, 489, 642, 777
Tru9I TTAA 4 cut(s) 374, 489, 642, 777
TscAI CASTG 2 cut(s) 843, 1446
TseFI GTSAC 3 cut(s) 605, 1011, 1154
TseI GCWGC 4 cut(s) 41, 822, 1103, 1373
Tsp45I GTSAC 3 cut(s) 605, 1011, 1154
TspDTI ATGAA 7 cut(s) 117, 257, 415, 681, 889, 911, 1099
TspRI CASTG 2 cut(s) 843, 1446
Van91I CCANNNNNTGG 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 373
VpaK11BI GGWCC 2 cut(s) 206, 299
XagI CCTNNNNNAGG 1 cut(s) 807
XapI RAATTY 6 cut(s) 546, 635, 938, 977, 999, 1045
XceI RCATGY 2 cut(s) 1068, 1310
XmaJI CCTAGG 1 cut(s) 1219
XmiI GTMKAC 1 cut(s) 1410
XmnI GAANNNNTTC 1 cut(s) 1268
XspI CTAG 3 cut(s) 395, 851, 1220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.