Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006743.1

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Reverse (-)

5380 .. 5889

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006743.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atggcttcgtcctcgagctcaccaataccggtgaacggagatggaaactattctgtcattacagttgcatcgctggaggaaacagtcaaccgaacagaatggctactggacccctcagctggaaatgagtctttttgcatcttccgagtacctaaatgcctagttgacgtaaacaagaacatctacgggcctcatatagtctccatcggtccttatcaccatggtgaaaaacatttggagatgatgcagcagcacaagaggagatttcttcgcgatcttcttgctcaaacaccaccaactggcccgggactagacgactaccggcaggctgtagcattaagggaagaagagataagagggtgctattcagagtcgacactcaagttttgcagggatcagctcgttgacatgatggtgttggatggtctcttcattattgaactgttgtgcaaaattggaggattatcaaaaacgccaattggagatgaccccgtcattcactttgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

169

Amino Acids

18.83

Weight (kDa)

5.46

Isoelectric Point (pI)

48.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	299
AccI	GTMKAC	1 cut(s)	374
AccII	CGCG	1 cut(s)	273
AclWI	GGATC	1 cut(s)	402
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	3 cut(s)	35, 119, 299
AgeI	ACCGGT	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	440
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	3 cut(s)	18, 119, 400
AluI	AGCT	3 cut(s)	18, 119, 400
Alw21I	GWGCWC	1 cut(s)	20
Alw26I	GTCTC	2 cut(s)	205, 431
AlwI	GGATC	1 cut(s)	402
Ama87I	CYCGRG	2 cut(s)	13, 304
AoxI	GGCC	2 cut(s)	188, 301
ApeKI	GCWGC	2 cut(s)	247, 250
AsiGI	ACCGGT	1 cut(s)	28
Asp700I	GAANNNNTTC	1 cut(s)	49
AspS9I	GGNCC	4 cut(s)	109, 188, 209, 302
AsuC2I	CCSGG	2 cut(s)	305, 306
AsuHPI	GGTGA	4 cut(s)	12, 43, 209, 236
AvaI	CYCGRG	2 cut(s)	13, 304
AvaII	GGWCC	2 cut(s)	109, 209
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	20
BbvCI	CCTCAGC	1 cut(s)	115
BbvI	GCAGC	2 cut(s)	259, 262
BccI	CCATC	4 cut(s)	35, 212, 406, 416
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BcnI	CCSGG	2 cut(s)	305, 306
BcoDI	GTCTC	2 cut(s)	205, 431
BfaI	CTAG	2 cut(s)	161, 311
BfmI	CTRYAG	1 cut(s)	330
BisI	GCNGC	2 cut(s)	248, 251
BlsI	GCNGC	2 cut(s)	249, 252
Bme1390I	CCNGG	2 cut(s)	305, 306
Bme18I	GGWCC	2 cut(s)	109, 209
BmeT110I	CYCGRG	2 cut(s)	13, 304
BmgT120I	GGNCC	4 cut(s)	109, 188, 209, 302
BmiI	GGNNCC	1 cut(s)	111
BmrFI	CCNGG	2 cut(s)	305, 306
BmsI	GCATC	3 cut(s)	77, 147, 234
BpmI	CTGGAG	1 cut(s)	95
Bpu10I	CCTNAGC	1 cut(s)	115
BpuEI	CTTGAG	1 cut(s)	365
BpuMI	CCSGG	2 cut(s)	305, 306
BsaI	GGTCTC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	220, 304
BsaWI	WCCGGW	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 119, 299
Bse118I	RCCGGY	2 cut(s)	28, 321
Bse1I	ACTGG	2 cut(s)	111, 304
BseDI	CCNNGG	2 cut(s)	220, 304
BseGI	GGATG	1 cut(s)	427
BseLI	CCNNNNNNNGG	3 cut(s)	35, 119, 299
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	111, 304
BseRI	GAGGAG	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	259, 262
Bsh1236I	CGCG	1 cut(s)	273
BshFI	GGCC	2 cut(s)	190, 303
BshTI	ACCGGT	1 cut(s)	28
BsiHKAI	GWGCWC	1 cut(s)	20
BsiHKCI	CYCGRG	2 cut(s)	13, 304
BsiSI	CCGG	3 cut(s)	29, 305, 322
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	35, 119, 299
BsmAI	GTCTC	2 cut(s)	205, 431
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	2 cut(s)	190, 303
Bso31I	GGTCTC	1 cut(s)	431
BsoBI	CYCGRG	2 cut(s)	13, 304
Bsp1286I	GDGCHC	1 cut(s)	20
Bsp143I	GATC	2 cut(s)	274, 394
Bsp19I	CCATGG	1 cut(s)	220
Bsp68I	TCGCGA	1 cut(s)	273
BspANI	GGCC	2 cut(s)	190, 303
BspCNI	CTCAG	1 cut(s)	128
BspFNI	CGCG	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	111
BspPI	GGATC	1 cut(s)	402
BspTNI	GGTCTC	1 cut(s)	431
BsrFI	RCCGGY	2 cut(s)	28, 321
BsrI	ACTGG	2 cut(s)	111, 304
BssAI	RCCGGY	2 cut(s)	28, 321
BssECI	CCNNGG	2 cut(s)	220, 304
BssMI	GATC	2 cut(s)	274, 394
BssT1I	CCWWGG	1 cut(s)	220
Bst4CI	ACNGT	3 cut(s)	64, 85, 444
Bst6I	CTCTTC	2 cut(s)	342, 434
BstC8I	GCNNGC	1 cut(s)	327
BstDEI	CTNAG	1 cut(s)	115
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	427
BstFNI	CGCG	1 cut(s)	273
BstKTI	GATC	2 cut(s)	277, 397
BstMAI	GTCTC	2 cut(s)	205, 431
BstMBI	GATC	2 cut(s)	274, 394
BstSCI	CCNGG	2 cut(s)	303, 304
BstSFI	CTRYAG	1 cut(s)	330
BstUI	CGCG	1 cut(s)	273
BstV1I	GCAGC	2 cut(s)	259, 262
BsuRI	GGCC	2 cut(s)	190, 303
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	54
BtsCI	GGATG	1 cut(s)	427
BtuMI	TCGCGA	1 cut(s)	273
Cac8I	GCNNGC	1 cut(s)	327
Cfr10I	RCCGGY	2 cut(s)	28, 321
Cfr13I	GGNCC	4 cut(s)	109, 188, 209, 302
Cfr9I	CCCGGG	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	149
CspAI	ACCGGT	1 cut(s)	28
CviAII	CATG	2 cut(s)	221, 409
CviJI	RGCY	8 cut(s)	5, 18, 103, 119, 190, 303, 329, 400
CviKI_1	RGCY	8 cut(s)	5, 18, 103, 119, 190, 303, 329, 400
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	2 cut(s)	276, 396
DpnII	GATC	2 cut(s)	274, 394
Eam1104I	CTCTTC	2 cut(s)	342, 434
EarI	CTCTTC	2 cut(s)	342, 434
Ecl136II	GAGCTC	1 cut(s)	18
Eco130I	CCWWGG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	20
Eco31I	GGTCTC	1 cut(s)	431
Eco47I	GGWCC	2 cut(s)	109, 209
Eco53kI	GAGCTC	1 cut(s)	18
Eco88I	CYCGRG	2 cut(s)	13, 304
EcoICRI	GAGCTC	1 cut(s)	18
EcoT14I	CCWWGG	1 cut(s)	220
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	220
FaeI	CATG	2 cut(s)	224, 412
FaiI	YATR	5 cut(s)	195, 197, 222, 410, 508
FaqI	GGGAC	1 cut(s)	321
FatI	CATG	2 cut(s)	220, 408
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	2 cut(s)	248, 251
FokI	GGATG	1 cut(s)	434
FriOI	GRGCYC	1 cut(s)	20
Fsp4HI	GCNGC	2 cut(s)	248, 251
FspBI	CTAG	2 cut(s)	161, 311
GluI	GCNGC	2 cut(s)	248, 251
GsuI	CTGGAG	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	190, 303
HapII	CCGG	3 cut(s)	29, 305, 322
Hin1II	CATG	2 cut(s)	224, 412
HincII	GTYRAC	4 cut(s)	88, 166, 375, 406
HindII	GTYRAC	4 cut(s)	88, 166, 375, 406
HinfI	GANTC	2 cut(s)	128, 371
HpaII	CCGG	3 cut(s)	29, 305, 322
HphI	GGTGA	4 cut(s)	12, 43, 209, 236
Hpy166II	GTNNAC	6 cut(s)	34, 88, 166, 172, 375, 406
Hpy188I	TCNGA	2 cut(s)	146, 370
Hpy188III	TCNNGA	1 cut(s)	272
Hpy8I	GTNNAC	6 cut(s)	34, 88, 166, 172, 375, 406
HpyCH4III	ACNGT	3 cut(s)	64, 85, 444
HpyCH4IV	ACGT	1 cut(s)	168
HpyCH4V	TGCA	6 cut(s)	68, 138, 247, 390, 450, 506
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	224, 412
Kzo9I	GATC	2 cut(s)	274, 394
LpnPI	CCDG	9 cut(s)	42, 59, 92, 105, 285, 311, 318, 335, 376
Lsp1109I	GCAGC	2 cut(s)	259, 262
LweI	GCATC	3 cut(s)	77, 147, 234
MaeI	CTAG	2 cut(s)	161, 311
MaeII	ACGT	1 cut(s)	168
MalI	GATC	2 cut(s)	276, 396
MboI	GATC	2 cut(s)	274, 394
MboII	GAAGA	6 cut(s)	133, 260, 269, 356, 359, 421
MfeI	CAATTG	1 cut(s)	477
MhlI	GDGCHC	1 cut(s)	20
MluCI	AATT	2 cut(s)	453, 477
MlyI	GAGTC	2 cut(s)	137, 380
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	7 cut(s)	22, 70, 124, 201, 252, 350, 452
MroXI	GAANNNNTTC	1 cut(s)	49
MseI	TTAA	1 cut(s)	338
MslI	CAYNNNNRTG	2 cut(s)	222, 413
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	3 cut(s)	29, 305, 322
MspR9I	CCNGG	2 cut(s)	305, 306
MunI	CAATTG	1 cut(s)	477
MvnI	CGCG	1 cut(s)	273
NciI	CCSGG	2 cut(s)	305, 306
NcoI	CCATGG	1 cut(s)	220
NdeII	GATC	2 cut(s)	274, 394
NlaIII	CATG	2 cut(s)	224, 412
NlaIV	GGNNCC	1 cut(s)	111
NruI	TCGCGA	1 cut(s)	273
OliI	CACNNNNGTG	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	13
PdmI	GAANNNNTTC	1 cut(s)	49
PflFI	GACNNNGTC	1 cut(s)	491
PflMI	CCANNNNNTGG	1 cut(s)	299
PinAI	ACCGGT	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	249, 252
PleI	GAGTC	2 cut(s)	136, 379
PpsI	GAGTC	2 cut(s)	136, 379
Psp124BI	GAGCTC	1 cut(s)	20
PspN4I	GGNNCC	1 cut(s)	111
PspPI	GGNCC	4 cut(s)	109, 188, 209, 302
PspXI	VCTCGAGB	1 cut(s)	13
PsyI	GACNNNGTC	1 cut(s)	491
PvuII	CAGCTG	1 cut(s)	119
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
RseI	CAYNNNNRTG	2 cut(s)	222, 413
SacI	GAGCTC	1 cut(s)	20
SalI	GTCGAC	1 cut(s)	373
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	2 cut(s)	248, 251
Sau3AI	GATC	2 cut(s)	274, 394
Sau96I	GGNCC	4 cut(s)	109, 188, 209, 302
SchI	GAGTC	2 cut(s)	137, 380
ScrFI	CCNGG	2 cut(s)	305, 306
SduI	GDGCHC	1 cut(s)	20
SetI	ASST	5 cut(s)	20, 121, 154, 171, 402
SfaNI	GCATC	3 cut(s)	77, 147, 234
SfcI	CTRYAG	1 cut(s)	330
Sfr274I	CTCGAG	1 cut(s)	13
SinI	GGWCC	2 cut(s)	109, 209
SlaI	CTCGAG	1 cut(s)	13
SmaI	CCCGGG	1 cut(s)	306
SmiMI	CAYNNNNRTG	2 cut(s)	222, 413
SmlI	CTYRAG	2 cut(s)	13, 380
SmoI	CTYRAG	2 cut(s)	13, 380
Sse9I	AATT	2 cut(s)	453, 477
SspMI	CTAG	2 cut(s)	161, 311
SstI	GAGCTC	1 cut(s)	20
StyD4I	CCNGG	2 cut(s)	303, 304
StyI	CCWWGG	1 cut(s)	220
TaaI	ACNGT	3 cut(s)	64, 85, 444
TaiI	ACGT	1 cut(s)	171
TaqI	TCGA	2 cut(s)	14, 374
TaqII	GACCGA	1 cut(s)	197
TasI	AATT	2 cut(s)	453, 477
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TseI	GCWGC	2 cut(s)	247, 250
TspDTI	ATGAA	1 cut(s)	421
TspGWI	ACGGA	1 cut(s)	51
TspMI	CCCGGG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	491
Van91I	CCANNNNNTGG	1 cut(s)	299
VpaK11BI	GGWCC	2 cut(s)	109, 209
XhoI	CTCGAG	1 cut(s)	13
XmaI	CCCGGG	1 cut(s)	304
XmiI	GTMKAC	1 cut(s)	374
XmnI	GAANNNNTTC	1 cut(s)	49
XspI	CTAG	2 cut(s)	161, 311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.