Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Reverse (-)

12593424 .. 12596001

Gene Structure 2578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1152400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1587 bp

ATGCCTCAACATCTCTTGGAAATAAATGAGAAGGCCTACCAACCTCATATAGTTTCCATCGGTCCTTATCACTATGGCGACACGCGTGTGGAGATGATGCAGCAGCATAAACGGAGATTTCTTCGTGATCTACTTGCGCGAACACCATCAAATGGCCGGAGACTTGATCACTACAGGCAGGTTGTAGCATCAATGGAAGAAAGCATACGAGGGTGCTATTCGGAGACAATCGATTTAAGCAGTCATGACCTAGTTGAGATAATGGTGTTGGATGGCTTGTTTACTGTTGAGCTCTTTTGCAAAGTTGGAAGGAAGTCACCAAGTGATCCAGATGATCTTGCAAGCTTGTCACCAAGTGATCCAGATGATCCCATCTTTAACTTGGCATGGGTATTTCCTAACCTCATACGCGATCTTTTGCGTTTGGAAAACCAAATTCCTTTCTTCGTTCTTCAAAAATTATTCGATGAATCAAAAGCATCAAGAGAAGATAGTGAGTCATCCCTTGCCAAACTTGCTTTGGAATTCTTTAATCATGCAGTAGAAAGAACTGATATCAGTACTACTGAAGAAAAACATTTACTCGACTTACTTCGCTTAAGTTTTATTCCTAAACCTTATGATCAGTCACCTCAAGGTCCAGCTAGAAATATTCGTCCATTAGTTCAATTGATCCGATCTGCGAAAAAGCCTCTACAAGGAACAAGGAAGGCAGTGAAAAAGTTTGTAGCAGGAATTAAGTCCAAGACAAGGAAGGGAAATACCTCTGCATCGATTGAATTCATTCAATCAGCCGAAAAGCTTCATCTTGCTGGAATTAAGTTCAAGACAAGGGATGCGATGAGCATCTTGGATATAAGATTTTGCAAAGGAGTGCTCGAAATTCCACACATAGTACTAGACGATCTACGCACTGTTTTATTCATCAATTTTGTAGCATTTGAACAATGCCACTACTTTCATTGCTCAAAGCATGTCACCACTTATGCTGCATTTAGGGGTGGATTTTTTTGCCAAATTGCCGTGCCAACCGAATTGCCAACCGTACCATACCGATTTTGTGTCAAATTTTTCGTACCAATCGGTAATGGTACGGTATTGTACCGTACCGAAATTTCATGGTACGGTATTAGTAATGGATACTATTACCACGATTTTACCAAACCGAAAGTTTGGTATGGTAATTGGTACACGGGGTTTGGTACGGTAACCGTACCGAACCCACCCCTAGCTGCATTCATGAGTTGCCTCATCCGCACTCCTGCAGATGTCTCATTCCTCTGCGACAAAACGATTATTGAGAATCGCCTCGGAAGTAATGAGGAGGCTGCTGATTTCTTCAAAAACTTTGGAAAAGACGTGCCCTTTGATATTGATGAGAGTTATCTATGCGAATTGTTCAAGGATATGAATGAGTACCATAGAAATATTTGGCATGTACGATGGGCGAGTTTCAGATTCGAGTACTTCCATACTCCGTGGTCTTTCTTATCAGCTGTAGCTGCTGTTGTGCTCCTACTACTTACCGCTTTTCAAGTCGTCCTTGCTTGTTTTGTGTATTTCCGTCCCCCAAAATCTGGGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

529

Amino Acids

60.67

Weight (kDa)

8.18

Isoelectric Point (pI)

43.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	2 - 332	2.9e-81	Plant protein of unknown function
DUF247	PF03140	412 - 508	1e-29	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	169
AccB7I	CCANNNNNTGG	2 cut(s)	152, 1577
AccII	CGCG	3 cut(s)	85, 139, 411
AciI	CCGC	2 cut(s)	1255, 1527
AclWI	GGATC	4 cut(s)	320, 353, 362, 667
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	6 cut(s)	435, 524, 779, 882, 1067, 1113
AcuI	CTGAAG	1 cut(s)	588
AdeI	CACNNNGTG	2 cut(s)	323, 356
AfiI	CCNNNNNNNGG	4 cut(s)	152, 698, 750, 1577
AflII	CTTAAG	1 cut(s)	598
AflIII	ACRYGT	1 cut(s)	83
AgsI	TTSAA	9 cut(s)	455, 668, 779, 788, 826, 944, 1342, 1402, 1535
AjiI	CACGTC	1 cut(s)	1360
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	7 cut(s)	292, 345, 644, 802, 1232, 1496, 1502
AluI	AGCT	7 cut(s)	292, 345, 644, 802, 1232, 1496, 1502
Alw21I	GWGCWC	3 cut(s)	294, 879, 1515
Alw26I	GTCTC	3 cut(s)	154, 218, 1276
AlwI	GGATC	4 cut(s)	320, 353, 362, 667
AoxI	GGCC	2 cut(s)	33, 154
ApeKI	GCWGC	6 cut(s)	100, 103, 989, 1232, 1328, 1502
ApoI	RAATTY	6 cut(s)	435, 524, 779, 882, 1067, 1113
ArsI	GACNNNNNNTTYG	2 cut(s)	1349, 1381
Asp700I	GAANNNNTTC	2 cut(s)	783, 801
AspLEI	GCGC	1 cut(s)	139
AspS9I	GGNCC	2 cut(s)	62, 638
AsuHPI	GGTGA	4 cut(s)	309, 342, 621, 970
AvaII	GGWCC	2 cut(s)	62, 638
BaeGI	GKGCMC	1 cut(s)	1365
BanII	GRGCYC	1 cut(s)	294
BarI	GAAGNNNNNNTAC	2 cut(s)	189, 221
Bbv12I	GWGCWC	3 cut(s)	294, 879, 1515
BbvI	GCAGC	6 cut(s)	112, 115, 976, 1219, 1315, 1489
BccI	CCATC	5 cut(s)	65, 154, 266, 380, 1437
BceAI	ACGGC	1 cut(s)	1007
BciVI	GTATCC	1 cut(s)	1133
BclI	TGATCA	2 cut(s)	166, 622
BcoDI	GTCTC	3 cut(s)	154, 218, 1276
BfaI	CTAG	4 cut(s)	251, 645, 899, 1229
BfmI	CTRYAG	3 cut(s)	172, 1263, 1497
BfrI	CTTAAG	1 cut(s)	598
BfuAI	ACCTGC	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	1133
BisI	GCNGC	6 cut(s)	101, 104, 990, 1233, 1329, 1503
BlsI	GCNGC	6 cut(s)	102, 105, 991, 1234, 1330, 1504
BmcAI	AGTACT	3 cut(s)	562, 897, 1466
Bme18I	GGWCC	2 cut(s)	62, 638
BmgBI	CACGTC	1 cut(s)	1360
BmgT120I	GGNCC	2 cut(s)	62, 638
BmsI	GCATC	6 cut(s)	87, 197, 488, 779, 826, 855
BpuEI	CTTGAG	1 cut(s)	618
Bsa29I	ATCGAT	2 cut(s)	231, 773
BsaBI	GATNNNNATC	1 cut(s)	845
BsaJI	CCNNGG	2 cut(s)	1309, 1478
Bsc4I	CCNNNNNNNGG	4 cut(s)	152, 698, 750, 1577
Bse3DI	GCAATG	1 cut(s)	961
Bse8I	GATNNNNATC	1 cut(s)	845
BseCI	ATCGAT	2 cut(s)	231, 773
BseDI	CCNNGG	2 cut(s)	1309, 1478
BseGI	GGATG	4 cut(s)	277, 500, 841, 1251
BseJI	GATNNNNATC	1 cut(s)	845
BseLI	CCNNNNNNNGG	4 cut(s)	152, 698, 750, 1577
BseMI	GCAATG	1 cut(s)	961
BseRI	GAGGAG	1 cut(s)	1337
BseSI	GKGCMC	1 cut(s)	1365
BseXI	GCAGC	6 cut(s)	112, 115, 976, 1219, 1315, 1489
Bsh1236I	CGCG	3 cut(s)	85, 139, 411
BshFI	GGCC	2 cut(s)	35, 156
BshVI	ATCGAT	2 cut(s)	231, 773
BsiHKAI	GWGCWC	3 cut(s)	294, 879, 1515
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	1551
BslI	CCNNNNNNNGG	4 cut(s)	152, 698, 750, 1577
BsmAI	GTCTC	3 cut(s)	154, 218, 1276
BsmFI	GGGAC	1 cut(s)	1551
BsmI	GAATGC	1 cut(s)	1235
BsnI	GGCC	2 cut(s)	35, 156
Bsp1286I	GDGCHC	4 cut(s)	294, 879, 1365, 1515
BspACI	CCGC	2 cut(s)	1255, 1527
BspANI	GGCC	2 cut(s)	35, 156
BspDI	ATCGAT	2 cut(s)	231, 773
BspFNI	CGCG	3 cut(s)	85, 139, 411
BspHI	TCATGA	2 cut(s)	244, 1239
BspMAI	CTGCAG	1 cut(s)	1267
BspMI	ACCTGC	1 cut(s)	169
BspPI	GGATC	4 cut(s)	320, 353, 362, 667
BspTI	CTTAAG	1 cut(s)	598
BsrDI	GCAATG	1 cut(s)	961
BssECI	CCNNGG	2 cut(s)	1309, 1478
Bst4CI	ACNGT	8 cut(s)	286, 916, 1045, 1096, 1106, 1127, 1207, 1213
BstAFI	CTTAAG	1 cut(s)	598
BstC8I	GCNNGC	1 cut(s)	343
BstDSI	CCRYGG	1 cut(s)	1478
BstEII	GGTNACC	1 cut(s)	1207
BstENI	CCTNNNNNAGG	1 cut(s)	696
BstF5I	GGATG	4 cut(s)	277, 500, 841, 1251
BstFNI	CGCG	3 cut(s)	85, 139, 411
BstHHI	GCGC	1 cut(s)	139
BstMAI	GTCTC	3 cut(s)	154, 218, 1276
BstMWI	GCNNNNNNNGC	3 cut(s)	515, 1254, 1502
BstNSI	RCATGY	2 cut(s)	977, 1439
BstPI	GGTNACC	1 cut(s)	1207
BstSFI	CTRYAG	3 cut(s)	172, 1263, 1497
BstSLI	GKGCMC	1 cut(s)	1365
BstUI	CGCG	3 cut(s)	85, 139, 411
BstV1I	GCAGC	6 cut(s)	112, 115, 976, 1219, 1315, 1489
Bsu15I	ATCGAT	2 cut(s)	231, 773
BsuI	GTATCC	1 cut(s)	1133
BsuRI	GGCC	2 cut(s)	35, 156
BsuTUI	ATCGAT	2 cut(s)	231, 773
BtgI	CCRYGG	1 cut(s)	1478
BtgZI	GCGATG	1 cut(s)	854
BtrI	CACGTC	1 cut(s)	1360
BtsCI	GGATG	4 cut(s)	277, 500, 841, 1251
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	720, 912
BveI	ACCTGC	1 cut(s)	169
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	2 cut(s)	244, 1239
CfoI	GCGC	1 cut(s)	139
Cfr13I	GGNCC	2 cut(s)	62, 638
ClaI	ATCGAT	2 cut(s)	231, 773
CviAII	CATG	7 cut(s)	245, 387, 536, 974, 1119, 1240, 1436
DraIII	CACNNNGTG	2 cut(s)	323, 356
EaeI	YGGCCR	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	292
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	62, 638
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	588
Eco91I	GGTNACC	1 cut(s)	1207
EcoICRI	GAGCTC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	696
EcoO65I	GGTNACC	1 cut(s)	1207
EcoRI	GAATTC	2 cut(s)	524, 779
EcoRV	GATATC	1 cut(s)	556
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	7 cut(s)	248, 390, 539, 977, 1122, 1243, 1439
FalI	AAGNNNNNCTT	2 cut(s)	1527, 1559
FaqI	GGGAC	1 cut(s)	1551
FatI	CATG	7 cut(s)	244, 386, 535, 973, 1118, 1239, 1435
FbaI	TGATCA	2 cut(s)	166, 622
Fnu4HI	GCNGC	6 cut(s)	101, 104, 990, 1233, 1329, 1503
FokI	GGATG	4 cut(s)	284, 487, 848, 1238
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	6 cut(s)	101, 104, 990, 1233, 1329, 1503
FspBI	CTAG	4 cut(s)	251, 645, 899, 1229
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	6 cut(s)	101, 104, 990, 1233, 1329, 1503
HaeIII	GGCC	2 cut(s)	35, 156
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	139
Hin1II	CATG	7 cut(s)	248, 390, 539, 977, 1122, 1243, 1439
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HindIII	AAGCTT	2 cut(s)	343, 800
HinfI	GANTC	4 cut(s)	470, 497, 1303, 1458
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	4 cut(s)	309, 342, 621, 970
Hpy166II	GTNNAC	2 cut(s)	282, 1191
Hpy188I	TCNGA	4 cut(s)	223, 677, 1313, 1457
Hpy188III	TCNNGA	7 cut(s)	125, 245, 329, 362, 483, 826, 1240
Hpy8I	GTNNAC	2 cut(s)	282, 1191
HpyAV	CCTTC	4 cut(s)	25, 303, 703, 748
HpyCH4III	ACNGT	8 cut(s)	286, 916, 1045, 1096, 1106, 1127, 1207, 1213
HpyCH4IV	ACGT	1 cut(s)	1359
HpyCH4V	TGCA	9 cut(s)	100, 300, 341, 539, 770, 867, 992, 1235, 1265
HpyF10VI	GCNNNNNNNGC	3 cut(s)	515, 1254, 1502
HpySE526I	ACGT	1 cut(s)	1359
Hsp92II	CATG	7 cut(s)	248, 390, 539, 977, 1122, 1243, 1439
HspAI	GCGC	1 cut(s)	137
Ksp22I	TGATCA	2 cut(s)	166, 622
LmnI	GCTCC	1 cut(s)	1518
Lsp1109I	GCAGC	6 cut(s)	112, 115, 976, 1219, 1315, 1489
LweI	GCATC	6 cut(s)	87, 197, 488, 779, 826, 855
MaeI	CTAG	4 cut(s)	251, 645, 899, 1229
MaeII	ACGT	1 cut(s)	1359
MaeIII	GTNAC	5 cut(s)	315, 348, 627, 976, 1207
MboII	GAAGA	7 cut(s)	113, 209, 436, 443, 500, 581, 1330
MfeI	CAATTG	1 cut(s)	668
MhlI	GDGCHC	4 cut(s)	294, 879, 1365, 1515
MluI	ACGCGT	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	506
MmeI	TCCRAC	2 cut(s)	249, 286
MroXI	GAANNNNTTC	2 cut(s)	783, 801
MseI	TTAA	6 cut(s)	236, 378, 531, 599, 738, 819
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	1496
MspCI	CTTAAG	1 cut(s)	598
MspI	CCGG	1 cut(s)	157
MunI	CAATTG	1 cut(s)	668
Mva1269I	GAATGC	1 cut(s)	1235
MvnI	CGCG	3 cut(s)	85, 139, 411
MwoI	GCNNNNNNNGC	3 cut(s)	515, 1254, 1502
NlaIII	CATG	7 cut(s)	248, 390, 539, 977, 1122, 1243, 1439
NmuCI	GTSAC	4 cut(s)	315, 348, 627, 976
NspI	RCATGY	2 cut(s)	977, 1439
OliI	CACNNNNGTG	1 cut(s)	86
PagI	TCATGA	2 cut(s)	244, 1239
PceI	AGGCCT	1 cut(s)	35
PctI	GAATGC	1 cut(s)	1235
PdmI	GAANNNNTTC	2 cut(s)	783, 801
PfeI	GAWTC	3 cut(s)	470, 1303, 1458
PflMI	CCANNNNNTGG	2 cut(s)	152, 1577
PkrI	GCNGC	6 cut(s)	102, 105, 991, 1234, 1330, 1504
PleI	GAGTC	1 cut(s)	505
PpsI	GAGTC	1 cut(s)	505
Psp124BI	GAGCTC	1 cut(s)	294
PspEI	GGTNACC	1 cut(s)	1207
PspPI	GGNCC	2 cut(s)	62, 638
PstI	CTGCAG	1 cut(s)	1267
PvuII	CAGCTG	1 cut(s)	1496
RseI	CAYNNNNRTG	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	6 cut(s)	236, 378, 531, 599, 738, 819
SatI	GCNGC	6 cut(s)	101, 104, 990, 1233, 1329, 1503
Sau96I	GGNCC	2 cut(s)	62, 638
ScaI	AGTACT	3 cut(s)	562, 897, 1466
SchI	GAGTC	1 cut(s)	506
SduI	GDGCHC	4 cut(s)	294, 879, 1365, 1515
SfaNI	GCATC	6 cut(s)	87, 197, 488, 779, 826, 855
SfcI	CTRYAG	3 cut(s)	172, 1263, 1497
SinI	GGWCC	2 cut(s)	62, 638
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	598, 633
SmoI	CTYRAG	2 cut(s)	598, 633
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	1255, 1527
SspI	AATATT	2 cut(s)	652, 1429
SspMI	CTAG	4 cut(s)	251, 645, 899, 1229
SstI	GAGCTC	1 cut(s)	294
StuI	AGGCCT	1 cut(s)	35
TaaI	ACNGT	8 cut(s)	286, 916, 1045, 1096, 1106, 1127, 1207, 1213
TaiI	ACGT	1 cut(s)	1362
TaqI	TCGA	6 cut(s)	231, 465, 585, 773, 879, 1461
TaqII	GACCGA	1 cut(s)	50
TatI	WGTACW	3 cut(s)	560, 895, 1464
TfiI	GAWTC	3 cut(s)	470, 1303, 1458
Tru1I	TTAA	6 cut(s)	236, 378, 531, 599, 738, 819
Tru9I	TTAA	6 cut(s)	236, 378, 531, 599, 738, 819
TscAI	CASTG	2 cut(s)	720, 919
TseFI	GTSAC	4 cut(s)	315, 348, 627, 976
TseI	GCWGC	6 cut(s)	100, 103, 989, 1232, 1328, 1502
Tsp45I	GTSAC	4 cut(s)	315, 348, 627, 976
TspDTI	ATGAA	8 cut(s)	483, 772, 794, 913, 950, 1107, 1228, 1424
TspGWI	ACGGA	3 cut(s)	127, 1467, 1553
TspRI	CASTG	2 cut(s)	720, 919
Van91I	CCANNNNNTGG	2 cut(s)	152, 1577
Vha464I	CTTAAG	1 cut(s)	598
VpaK11BI	GGWCC	2 cut(s)	62, 638
XagI	CCTNNNNNAGG	1 cut(s)	696
XapI	RAATTY	6 cut(s)	435, 524, 779, 882, 1067, 1113
XceI	RCATGY	2 cut(s)	977, 1439
XcmI	CCANNNNNNNNNTGG	2 cut(s)	379, 517
XmnI	GAANNNNTTC	2 cut(s)	783, 801
XspI	CTAG	4 cut(s)	251, 645, 899, 1229
ZrmI	AGTACT	3 cut(s)	562, 897, 1466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.