Rh2CG169100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002062
Physical Location & Seq
Forward (+)
15102037 .. 15102273
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG169100.1

Sequence Viewer

Length: 237 bp
ATGGGGAAGGATGTGCCTTTCGATATTGGCCAGAGTTATCTACTGGAGTTGTTCAAGGATGTAAATGAGTACCAGAGGAATATGTGGCATGTCCGATGGGCGGGTTTCAGGTTGAAGTATTTTGATACACCATGGTCTTTCTTGTCTGCTTTAGCTGCTGTCATACTCCTACTCTTCACTGCAATTCAGACCTTCTTTGCTGTTTATGCATATGTGCTTCCACCAAAAGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

78

Amino Acids

9.21

Weight (kDa)

5.68

Isoelectric Point (pI)

38.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 1 - 59 2.6e-13 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 101
AcoI YGGCCR 1 cut(s) 28
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 2 cut(s) 55, 115
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 155
BalI TGGCCA 1 cut(s) 30
BbvI GCAGC 1 cut(s) 142
BccI CCATC 1 cut(s) 90
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
BpmI CTGGAG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 131
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 131
BseGI GGATG 2 cut(s) 16, 64
BseLI CCNNNNNNNGG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 142
BshFI GGCC 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 100
BsnI GGCC 1 cut(s) 30
Bsp19I CCATGG 1 cut(s) 131
BspACI CCGC 1 cut(s) 101
BspANI GGCC 1 cut(s) 30
BsrI ACTGG 1 cut(s) 48
BssECI CCNNGG 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 131
Bst6I CTCTTC 1 cut(s) 179
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 2 cut(s) 16, 64
BstMWI GCNNNNNNNGC 2 cut(s) 155, 206
BstNSI RCATGY 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 142
BsuRI GGCC 1 cut(s) 30
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 2 cut(s) 16, 64
BtsI GCAGTG 1 cut(s) 177
BtsIMutI CAGTG 1 cut(s) 177
Csp6I GTAC 1 cut(s) 70
CviAII CATG 2 cut(s) 89, 132
CviJI RGCY 2 cut(s) 30, 155
CviKI_1 RGCY 2 cut(s) 30, 155
CviQI GTAC 1 cut(s) 70
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Eco130I CCWWGG 1 cut(s) 131
EcoT14I CCWWGG 1 cut(s) 131
EcoT22I ATGCAT 1 cut(s) 211
ErhI CCWWGG 1 cut(s) 131
FaeI CATG 2 cut(s) 92, 135
FaiI YATR 7 cut(s) 83, 90, 133, 164, 207, 211, 213
FatI CATG 2 cut(s) 88, 131
FauI CCCGC 1 cut(s) 94
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 1 cut(s) 156
FokI GGATG 2 cut(s) 23, 71
Fsp4HI GCNGC 1 cut(s) 156
GluI GCNGC 1 cut(s) 156
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 30
Hin1II CATG 2 cut(s) 92, 135
Hpy188I TCNGA 2 cut(s) 95, 189
HpyAV CCTTC 1 cut(s) 202
HpyCH4V TGCA 2 cut(s) 182, 209
HpyF10VI GCNNNNNNNGC 2 cut(s) 155, 206
Hsp92II CATG 2 cut(s) 92, 135
LpnPI CCDG 4 cut(s) 29, 44, 86, 94
Lsp1109I GCAGC 1 cut(s) 142
MboII GAAGA 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 1 cut(s) 183
MluNI TGGCCA 1 cut(s) 30
MnlI CCTC 1 cut(s) 69
Mox20I TGGCCA 1 cut(s) 30
Mph1103I ATGCAT 1 cut(s) 211
MscI TGGCCA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 30
MwoI GCNNNNNNNGC 2 cut(s) 155, 206
NcoI CCATGG 1 cut(s) 131
NdeI CATATG 1 cut(s) 211
NlaIII CATG 2 cut(s) 92, 135
NsiI ATGCAT 1 cut(s) 211
NspI RCATGY 1 cut(s) 92
PkrI GCNGC 1 cut(s) 157
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SatI GCNGC 1 cut(s) 156
SetI ASST 3 cut(s) 113, 157, 194
SgeI CNNG 9 cut(s) 43, 56, 67, 85, 101, 114, 121, 144, 154
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 101
StyI CCWWGG 1 cut(s) 131
TaqI TCGA 1 cut(s) 21
TasI AATT 1 cut(s) 183
TscAI CASTG 1 cut(s) 184
TseI GCWGC 1 cut(s) 155
TspRI CASTG 1 cut(s) 184
XceI RCATGY 1 cut(s) 92
Zsp2I ATGCAT 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.