Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Forward (+)

13805028 .. 13806148

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1114700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCAAATACAGGAAGAAATCATACTGCCGTTACAGTTACCACTACGGAATATAATCGCATGACGACGTTGAAGCAAAGAATCGAAGAAACGAAATGGCTACTGCATCCGTTAGCAGGTAAGAGCTCTTGTTGCATCTTCAAAGTACCTCATTGCCTGGCGAAAACAAACGAGGGGAAGTACCGGCCTCATATCATCTCAATCGGCCCTTATCACTACGGTGATAAACACGTGGTGATGATGCAACAACACAAATGGAGATTTCTTGACAATCTTCTCGGTCGAACGCAGTTGATCGGACTTGATGACTACCGGCAGGTTGTAGCAGAAATCGAAGATGATATAAGAGAGTGCTATGCAGAGACCATTAACTTATGCAGCCGCCATCTGGTTGAGATGATGGTACCAGACGGTCTCTTCATCATCGAAATGTTCTGCAAAGTAAAATTATTATCGAGATCTTGTTCTATTGGAGAATCAAGGAGGCCTCCTCAAGTCTTGAGGCATTATTTCAGTGTCGAAGGAAAGCATCTACTCGATTTACTTCACCTGAGTTTTGTCCCCGAACCTCAGGATGATTCGCCTCAGGAGGACGTTGAGTTTATCCAATCGGCAAAAAAGCTTCACGATCTCGCCGGAATTATGTTCAAAACACGGGAGGCGCAGAGCTTCCTAGACATCAGATTTTGCAATGGAGTTCTTGAAATTCCGCACATAAAACTAGATGATCTCCACACCCATTTCTTCTTAAACTTGGTTGCATTTGAACAACGCTACTCTCATTGCCCAAAGTATATAAACACTTACGCTGCATTCATGAGTTGTCTCGTCCGCACGCCGATGGACGCGACATTTCTGTCCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

289

Amino Acids

33.4

Weight (kDa)

6.75

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	46 - 150	4.9e-31	Plant protein of unknown function
DUF247	PF03140	172 - 287	1e-27	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	856
Acc36I	ACCTGC	2 cut(s)	107, 307
Acc65I	GGTACC	1 cut(s)	403
AccB1I	GGYRCC	1 cut(s)	403
AccII	CGCG	1 cut(s)	848
AciI	CCGC	3 cut(s)	382, 710, 832
AcsI	RAATTY	1 cut(s)	705
AcvI	CACGTG	1 cut(s)	232
AdeI	CACNNNGTG	1 cut(s)	235
AfaI	GTAC	3 cut(s)	147, 182, 405
AfiI	CCNNNNNNNGG	2 cut(s)	116, 388
AflIII	ACRYGT	1 cut(s)	229
AgsI	TTSAA	5 cut(s)	73, 142, 649, 704, 767
AjnI	CCWGG	1 cut(s)	156
AleI	CACNNNNGTG	1 cut(s)	219
AluBI	AGCT	3 cut(s)	126, 622, 669
AluI	AGCT	3 cut(s)	126, 622, 669
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	356, 419, 830
AoxI	GGCC	3 cut(s)	185, 205, 485
ApeKI	GCWGC	2 cut(s)	378, 809
ApoI	RAATTY	1 cut(s)	705
Asp718I	GGTACC	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	664
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	233, 247, 539
AxyI	CCTNAGG	2 cut(s)	570, 585
BanI	GGYRCC	1 cut(s)	403
BanII	GRGCYC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	7, 39
BbrPI	CACGTG	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	128
BbvI	GCAGC	2 cut(s)	390, 796
BccI	CCATC	3 cut(s)	393, 394, 835
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	158
BcoDI	GTCTC	3 cut(s)	356, 419, 830
BfaI	CTAG	2 cut(s)	674, 722
BfuAI	ACCTGC	2 cut(s)	107, 307
BglII	AGATCT	1 cut(s)	458
BisI	GCNGC	3 cut(s)	379, 382, 810
BlsI	GCNGC	3 cut(s)	380, 383, 811
Bme1390I	CCNGG	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	206
BmiI	GGNNCC	1 cut(s)	405
BmrFI	CCNGG	1 cut(s)	158
BmsI	GCATC	4 cut(s)	115, 144, 231, 538
BplI	GAGNNNNNCTC	2 cut(s)	475, 507
BpuEI	CTTGAG	2 cut(s)	477, 520
BsaAI	YACGTR	1 cut(s)	232
BsaI	GGTCTC	2 cut(s)	356, 419
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 388
Bse118I	RCCGGY	2 cut(s)	183, 312
Bse21I	CCTNAGG	2 cut(s)	570, 585
Bse3DI	GCAATG	3 cut(s)	151, 697, 781
BseBI	CCWGG	1 cut(s)	158
BseGI	GGATG	2 cut(s)	106, 580
BseLI	CCNNNNNNNGG	2 cut(s)	116, 388
BseMI	GCAATG	3 cut(s)	151, 697, 781
BseMII	CTCAG	3 cut(s)	542, 584, 599
BseRI	GAGGAG	1 cut(s)	480
BseXI	GCAGC	2 cut(s)	390, 796
Bsh1236I	CGCG	1 cut(s)	848
Bsh1285I	CGRYCG	1 cut(s)	283
BshFI	GGCC	3 cut(s)	187, 207, 487
BshNI	GGYRCC	1 cut(s)	403
BsiEI	CGRYCG	1 cut(s)	283
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	184, 313, 636
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	116, 388
BsmAI	GTCTC	3 cut(s)	356, 419, 830
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	1 cut(s)	812
BsnI	GGCC	3 cut(s)	187, 207, 487
Bso31I	GGTCTC	2 cut(s)	356, 419
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	294, 458, 628, 727
BspACI	CCGC	3 cut(s)	382, 710, 832
BspANI	GGCC	3 cut(s)	187, 207, 487
BspCNI	CTCAG	3 cut(s)	543, 583, 598
BspFNI	CGCG	1 cut(s)	848
BspHI	TCATGA	1 cut(s)	816
BspLI	GGNNCC	1 cut(s)	405
BspMI	ACCTGC	2 cut(s)	107, 307
BspT107I	GGYRCC	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	356, 419
BsrDI	GCAATG	3 cut(s)	151, 697, 781
BsrFI	RCCGGY	2 cut(s)	183, 312
BssAI	RCCGGY	2 cut(s)	183, 312
BssMI	GATC	4 cut(s)	294, 458, 628, 727
Bst2UI	CCWGG	1 cut(s)	158
Bst4CI	ACNGT	3 cut(s)	37, 221, 413
Bst6I	CTCTTC	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	836
BstDEI	CTNAG	3 cut(s)	551, 570, 585
BstF5I	GGATG	2 cut(s)	106, 580
BstFNI	CGCG	1 cut(s)	848
BstHHI	GCGC	1 cut(s)	664
BstKTI	GATC	4 cut(s)	297, 461, 631, 730
BstMAI	GTCTC	3 cut(s)	356, 419, 830
BstMBI	GATC	4 cut(s)	294, 458, 628, 727
BstMCI	CGRYCG	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	158
BstSCI	CCNGG	1 cut(s)	156
BstUI	CGCG	1 cut(s)	848
BstV1I	GCAGC	2 cut(s)	390, 796
BstX2I	RGATCY	1 cut(s)	458
BstYI	RGATCY	1 cut(s)	458
Bsu36I	CCTNAGG	2 cut(s)	570, 585
BsuRI	GGCC	3 cut(s)	187, 207, 487
BtsCI	GGATG	2 cut(s)	106, 580
BtsIMutI	CAGTG	1 cut(s)	520
BveI	ACCTGC	2 cut(s)	107, 307
Cac8I	GCNNGC	1 cut(s)	836
CciI	TCATGA	1 cut(s)	816
CfoI	GCGC	1 cut(s)	664
Cfr10I	RCCGGY	2 cut(s)	183, 312
Cfr13I	GGNCC	1 cut(s)	206
CseI	GACGC	1 cut(s)	854
Csp6I	GTAC	3 cut(s)	146, 181, 404
CviAII	CATG	2 cut(s)	61, 817
CviJI	RGCY	8 cut(s)	100, 126, 187, 207, 381, 487, 622, 669
CviKI_1	RGCY	8 cut(s)	100, 126, 187, 207, 381, 487, 622, 669
CviQI	GTAC	3 cut(s)	146, 181, 404
DdeI	CTNAG	3 cut(s)	551, 570, 585
DpnI	GATC	4 cut(s)	296, 460, 630, 729
DpnII	GATC	4 cut(s)	294, 458, 628, 727
DraIII	CACNNNGTG	1 cut(s)	235
DrdI	GACNNNNNNGTC	1 cut(s)	856
DseDI	GACNNNNNNGTC	1 cut(s)	856
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
Ecl136II	GAGCTC	1 cut(s)	126
Eco147I	AGGCCT	1 cut(s)	487
Eco24I	GRGCYC	1 cut(s)	128
Eco31I	GGTCTC	2 cut(s)	356, 419
Eco53kI	GAGCTC	1 cut(s)	126
Eco72I	CACGTG	1 cut(s)	232
Eco81I	CCTNAGG	2 cut(s)	570, 585
EcoICRI	GAGCTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	128
FaeI	CATG	2 cut(s)	64, 820
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	2 cut(s)	60, 816
Fnu4HI	GCNGC	3 cut(s)	379, 382, 810
FokI	GGATG	2 cut(s)	93, 587
FriOI	GRGCYC	1 cut(s)	128
Fsp4HI	GCNGC	3 cut(s)	379, 382, 810
FspBI	CTAG	2 cut(s)	674, 722
GlaI	GCGC	1 cut(s)	663
GluI	GCNGC	3 cut(s)	379, 382, 810
HaeIII	GGCC	3 cut(s)	187, 207, 487
HapII	CCGG	3 cut(s)	184, 313, 636
HgaI	GACGC	1 cut(s)	854
HhaI	GCGC	1 cut(s)	664
Hin1II	CATG	2 cut(s)	64, 820
Hin6I	GCGC	1 cut(s)	662
HinP1I	GCGC	1 cut(s)	662
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	3 cut(s)	81, 476, 578
HpaII	CCGG	3 cut(s)	184, 313, 636
HphI	GGTGA	3 cut(s)	233, 247, 539
Hpy188I	TCNGA	3 cut(s)	299, 683, 862
Hpy188III	TCNNGA	8 cut(s)	266, 456, 499, 572, 587, 626, 701, 817
Hpy99I	CGWCG	1 cut(s)	70
HpyAV	CCTTC	1 cut(s)	515
HpyCH4III	ACNGT	3 cut(s)	37, 221, 413
HpyCH4IV	ACGT	3 cut(s)	68, 231, 594
HpyCH4V	TGCA	9 cut(s)	106, 135, 244, 359, 378, 438, 690, 761, 812
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	3 cut(s)	551, 570, 585
HpySE526I	ACGT	3 cut(s)	68, 231, 594
Hsp92II	CATG	2 cut(s)	64, 820
HspAI	GCGC	1 cut(s)	662
KpnI	GGTACC	1 cut(s)	407
Kzo9I	GATC	4 cut(s)	294, 458, 628, 727
Lsp1109I	GCAGC	2 cut(s)	390, 796
LweI	GCATC	4 cut(s)	115, 144, 231, 538
MaeI	CTAG	2 cut(s)	674, 722
MaeII	ACGT	3 cut(s)	68, 231, 594
MaeIII	GTNAC	2 cut(s)	31, 37
MalI	GATC	4 cut(s)	296, 460, 630, 729
MboI	GATC	4 cut(s)	294, 458, 628, 727
MboII	GAAGA	7 cut(s)	27, 98, 130, 266, 347, 409, 736
MflI	RGATCY	1 cut(s)	458
MhlI	GDGCHC	1 cut(s)	128
MluCI	AATT	3 cut(s)	446, 639, 705
MseI	TTAA	3 cut(s)	369, 749, 865
MslI	CAYNNNNRTG	3 cut(s)	219, 428, 839
MspI	CCGG	3 cut(s)	184, 313, 636
MspR9I	CCNGG	1 cut(s)	158
Mva1269I	GAATGC	1 cut(s)	812
MvaI	CCWGG	1 cut(s)	158
MvnI	CGCG	1 cut(s)	848
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	4 cut(s)	294, 458, 628, 727
NlaIII	CATG	2 cut(s)	64, 820
NlaIV	GGNNCC	1 cut(s)	405
OliI	CACNNNNGTG	1 cut(s)	219
PagI	TCATGA	1 cut(s)	816
PceI	AGGCCT	1 cut(s)	487
PctI	GAATGC	1 cut(s)	812
PfeI	GAWTC	3 cut(s)	81, 476, 578
PkrI	GCNGC	3 cut(s)	380, 383, 811
PmaCI	CACGTG	1 cut(s)	232
PmlI	CACGTG	1 cut(s)	232
Ppu21I	YACGTR	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	156
PspCI	CACGTG	1 cut(s)	232
PspGI	CCWGG	1 cut(s)	156
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	458
RsaI	GTAC	3 cut(s)	147, 182, 405
RsaNI	GTAC	3 cut(s)	146, 181, 404
RseI	CAYNNNNRTG	3 cut(s)	219, 428, 839
SacI	GAGCTC	1 cut(s)	128
SaqAI	TTAA	3 cut(s)	369, 749, 865
SatI	GCNGC	3 cut(s)	379, 382, 810
Sau3AI	GATC	4 cut(s)	294, 458, 628, 727
Sau96I	GGNCC	1 cut(s)	206
ScrFI	CCNGG	1 cut(s)	158
SduI	GDGCHC	1 cut(s)	128
SfaNI	GCATC	4 cut(s)	115, 144, 231, 538
SmiMI	CAYNNNNRTG	3 cut(s)	219, 428, 839
SmlI	CTYRAG	2 cut(s)	492, 499
SmoI	CTYRAG	2 cut(s)	492, 499
Sse9I	AATT	3 cut(s)	446, 639, 705
SseBI	AGGCCT	1 cut(s)	487
SsiI	CCGC	3 cut(s)	382, 710, 832
SspMI	CTAG	2 cut(s)	674, 722
SstI	GAGCTC	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	487
StyD4I	CCNGG	1 cut(s)	156
TaaI	ACNGT	3 cut(s)	37, 221, 413
TaiI	ACGT	3 cut(s)	71, 234, 597
TaqI	TCGA	7 cut(s)	84, 283, 333, 426, 455, 519, 537
TaqII	GACCGA	1 cut(s)	269
TasI	AATT	3 cut(s)	446, 639, 705
TauI	GCSGC	1 cut(s)	384
TfiI	GAWTC	3 cut(s)	81, 476, 578
Tru1I	TTAA	3 cut(s)	369, 749, 865
Tru9I	TTAA	3 cut(s)	369, 749, 865
TscAI	CASTG	1 cut(s)	520
TseI	GCWGC	2 cut(s)	378, 809
TspDTI	ATGAA	2 cut(s)	409, 805
TspGWI	ACGGA	2 cut(s)	62, 99
TspRI	CASTG	1 cut(s)	520
XapI	RAATTY	1 cut(s)	705
XspI	CTAG	2 cut(s)	674, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.