Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Reverse (-)

16165972 .. 16168820

Gene Structure 2849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G150000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGAACTCACAATCAAGCTCACCAACAGCTAATGGAGGAAGGGATCATGCTCTCATCACAATTGCAGCGACAACCAATATCCAGACGACACCATTGGACCAAAGAATCCAGGAAACAAGATGGCTTCTGCATCCATTAGCAGGAAAGGAATCTTGTTGCATCTTCAAGGTACGTCAATGCCTTGCGGAAATAAACAAGAAGACTTACCAGCCCCATATTGTCTCCTGTGGTCCATTTCACCATGGTGATCAACATTTGGAGATGATACACCAACACAAATGGAAATATCTTCGCGGTCTACTTGCTCGAACACCTTCAAACGGCCCAACACTTGATCACTATCAGCAGGTGGTAGCAGCAATGGAAGAAGAAATAAGAGAGTGCTATTCGGAGACCATCAGCTTAAGCAGTGATGATCTAGTTGAGATGATGGTGTTGGATGGTCTCTTCACTATTGAACTCTTTTGCAAAGTTGGAAAATTGTCACCAAGTGATCCAGACGATCCCATCTTTAACTTGGCATGGGTATTCGCTAATATCTTACAAGACCTTTTTCGTTTCGAGAATCAAATTCCTTTCTTCCTTCTTCAAAAACTATTTGATGAATCAAAACCTTCAAGGAAAGATAGTGATTCATCCTTAGCCAAACTTGCTTTAGACTTCTTTCGTTATGCATTAGAAACCCCTGAGCAAGTGTTAAATCAGGACTTCACTACTGTTGAAGGAAAACATTTACTGGATTTACTCCGCTGGAGTTTTATCCCTAAACCCTACGATCATTCACCTCAGGAAGAGCCTCGGAATGTTCGTCCATTAGTTCAATTGATTAAGTATGTCAAAAAGCCTCTACAAGGATTTGCAGCAGGAAGGAAGGGAAATACTTCTCCGCCCATTGAACTTATCCAGTCAGCCAAAAAGCTTCGTCAAGCTGGAATTAAGTTCAAGACAAGGGAGGCAGTGAGCTTCTTAGACATAAGATTTTGCAATGGAGTGCTGGAAATTCCACACGTAGTAATCGACAATCTACGGACTGATTTATTGATGAATTTTGTAGCATTTGAACAATGCTACTCTCATTGCTCAAAGCATGTAACAAGTTATGCTGCATTCATGAGTTGTCTGATCCGCACGCCTGAAGACGTATCATTTCTCTGTGACAAGAAAATTGTCGAGAATTATCTTGGAACTGATGAGGAGGTCGTTCATTTCTTCAAAAACCTTGGCAAAGGTGTGACGTTTGATATCGATGGGAGTTATCTATGGAAGTTGTTCAAAGAGGTGAATGAGTACCATATAAATATGTGGCATGTGCGATGGGAAGGTTTTAGATCCAAGTATTTTGGTACTCCATGGTCTTTCTTGTCTGCTTTAGCTGCTGTTATACTCCTATTACTCACTGCAATTCAGACCTTCTTTACAGTTTATGAATATGCCAGTCCATCTGGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

484

Amino Acids

55.39

Weight (kDa)

6.39

Isoelectric Point (pI)

49.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	337
Acc36I	ACCTGC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	298
AccII	CGCG	1 cut(s)	294
AciI	CCGC	5 cut(s)	185, 294, 748, 887, 1126
AclWI	GGATC	5 cut(s)	51, 488, 497, 1117, 1323
AcsI	RAATTY	3 cut(s)	570, 999, 1045
AcuI	CTGAAG	1 cut(s)	1155
AdeI	CACNNNGTG	1 cut(s)	491
AfaI	GTAC	3 cut(s)	171, 1289, 1345
AfiI	CCNNNNNNNGG	3 cut(s)	140, 320, 851
AflII	CTTAAG	1 cut(s)	403
AflIII	ACRYGT	1 cut(s)	1006
AjnI	CCWGG	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	243
AluBI	AGCT	7 cut(s)	18, 29, 402, 919, 929, 963, 1373
AluI	AGCT	7 cut(s)	18, 29, 402, 919, 929, 963, 1373
Alw26I	GTCTC	3 cut(s)	226, 386, 449
AlwI	GGATC	5 cut(s)	51, 488, 497, 1117, 1323
AoxI	GGCC	2 cut(s)	322, 1445
ApeKI	GCWGC	5 cut(s)	65, 356, 860, 1103, 1373
ApoI	RAATTY	3 cut(s)	570, 999, 1045
Asp700I	GAANNNNTTC	3 cut(s)	313, 880, 1268
AspS9I	GGNCC	4 cut(s)	97, 230, 323, 1445
AsuHPI	GGTGA	6 cut(s)	12, 230, 257, 477, 774, 1291
AvaII	GGWCC	2 cut(s)	97, 230
AxyI	CCTNAGG	1 cut(s)	786
BbsI	GAAGAC	2 cut(s)	206, 1143
BbvI	GCAGC	5 cut(s)	77, 368, 872, 1090, 1360
BccI	CCATC	8 cut(s)	114, 404, 424, 434, 515, 1241, 1308, 1447
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	110
BclI	TGATCA	2 cut(s)	247, 334
BcoDI	GTCTC	3 cut(s)	226, 386, 449
BfaI	CTAG	1 cut(s)	419
BfrI	CTTAAG	1 cut(s)	403
BfuAI	ACCTGC	1 cut(s)	337
BisI	GCNGC	5 cut(s)	66, 357, 861, 1104, 1374
BlsI	GCNGC	5 cut(s)	67, 358, 862, 1105, 1375
Bme1390I	CCNGG	1 cut(s)	110
Bme18I	GGWCC	2 cut(s)	97, 230
BmgT120I	GGNCC	4 cut(s)	97, 230, 323, 1445
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	2 cut(s)	139, 168
BpiI	GAAGAC	2 cut(s)	206, 1143
BpmI	CTGGAG	1 cut(s)	772
Bpu10I	CCTNAGC	2 cut(s)	640, 687
Bsa29I	ATCGAT	1 cut(s)	1245
BsaAI	YACGTR	1 cut(s)	1009
BsaBI	GATNNNNATC	1 cut(s)	339
BsaI	GGTCTC	2 cut(s)	386, 449
BsaJI	CCNNGG	4 cut(s)	241, 797, 1219, 1349
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 320, 851
Bse1I	ACTGG	3 cut(s)	741, 904, 1434
Bse21I	CCTNAGG	1 cut(s)	786
Bse3DI	GCAATG	3 cut(s)	366, 991, 1075
Bse8I	GATNNNNATC	1 cut(s)	339
BseBI	CCWGG	1 cut(s)	110
BseCI	ATCGAT	1 cut(s)	1245
BseDI	CCNNGG	4 cut(s)	241, 797, 1219, 1349
BseGI	GGATG	3 cut(s)	130, 445, 635
BseJI	GATNNNNATC	1 cut(s)	339
BseLI	CCNNNNNNNGG	3 cut(s)	140, 320, 851
BseMI	GCAATG	3 cut(s)	366, 991, 1075
BseMII	CTCAG	2 cut(s)	678, 800
BseNI	ACTGG	3 cut(s)	741, 904, 1434
BseRI	GAGGAG	1 cut(s)	1208
BseXI	GCAGC	5 cut(s)	77, 368, 872, 1090, 1360
Bsh1236I	CGCG	1 cut(s)	294
BshFI	GGCC	2 cut(s)	324, 1447
BshVI	ATCGAT	1 cut(s)	1245
BslI	CCNNNNNNNGG	3 cut(s)	140, 320, 851
BsmAI	GTCTC	3 cut(s)	226, 386, 449
BsmI	GAATGC	1 cut(s)	1106
BsnI	GGCC	2 cut(s)	324, 1447
Bso31I	GGTCTC	2 cut(s)	386, 449
Bsp143I	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
Bsp19I	CCATGG	2 cut(s)	241, 1349
BspACI	CCGC	5 cut(s)	185, 294, 748, 887, 1126
BspANI	GGCC	2 cut(s)	324, 1447
BspCNI	CTCAG	2 cut(s)	679, 799
BspDI	ATCGAT	1 cut(s)	1245
BspFNI	CGCG	1 cut(s)	294
BspHI	TCATGA	1 cut(s)	1110
BspMI	ACCTGC	1 cut(s)	337
BspPI	GGATC	5 cut(s)	51, 488, 497, 1117, 1323
BspQI	GCTCTTC	1 cut(s)	786
BspTI	CTTAAG	1 cut(s)	403
BspTNI	GGTCTC	2 cut(s)	386, 449
BsrDI	GCAATG	3 cut(s)	366, 991, 1075
BsrI	ACTGG	3 cut(s)	741, 904, 1434
BssECI	CCNNGG	4 cut(s)	241, 797, 1219, 1349
BssMI	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
BssT1I	CCWWGG	3 cut(s)	241, 1219, 1349
Bst2UI	CCWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	718, 1420
Bst6I	CTCTTC	2 cut(s)	452, 786
BstAFI	CTTAAG	1 cut(s)	403
BstBAI	YACGTR	1 cut(s)	1009
BstC8I	GCNNGC	1 cut(s)	1130
BstDEI	CTNAG	4 cut(s)	640, 687, 786, 967
BstDSI	CCRYGG	2 cut(s)	241, 1349
BstENI	CCTNNNNNAGG	1 cut(s)	849
BstF5I	GGATG	3 cut(s)	130, 445, 635
BstFNI	CGCG	1 cut(s)	294
BstKTI	GATC	9 cut(s)	46, 250, 337, 418, 496, 505, 778, 1125, 1331
BstMAI	GTCTC	3 cut(s)	226, 386, 449
BstMBI	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
BstMWI	GCNNNNNNNGC	2 cut(s)	650, 1373
BstNI	CCWGG	1 cut(s)	110
BstNSI	RCATGY	2 cut(s)	1091, 1310
BstSCI	CCNGG	1 cut(s)	108
BstUI	CGCG	1 cut(s)	294
BstV1I	GCAGC	5 cut(s)	77, 368, 872, 1090, 1360
BstV2I	GAAGAC	2 cut(s)	206, 1143
BstX2I	RGATCY	1 cut(s)	1328
BstYI	RGATCY	1 cut(s)	1328
Bsu15I	ATCGAT	1 cut(s)	1245
Bsu36I	CCTNAGG	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	324, 1447
BsuTUI	ATCGAT	1 cut(s)	1245
BtgI	CCRYGG	2 cut(s)	241, 1349
BtgZI	GCGATG	1 cut(s)	1327
BtsCI	GGATG	3 cut(s)	130, 445, 635
BtsI	GCAGTG	3 cut(s)	415, 963, 1395
BtsIMutI	CAGTG	3 cut(s)	415, 963, 1395
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	1 cut(s)	1130
CciI	TCATGA	1 cut(s)	1110
Cfr13I	GGNCC	4 cut(s)	97, 230, 323, 1445
ClaI	ATCGAT	1 cut(s)	1245
Csp6I	GTAC	3 cut(s)	170, 1288, 1344
CviAII	CATG	7 cut(s)	47, 242, 522, 1088, 1111, 1307, 1350
CviQI	GTAC	3 cut(s)	170, 1288, 1344
DdeI	CTNAG	4 cut(s)	640, 687, 786, 967
DpnI	GATC	9 cut(s)	45, 249, 336, 417, 495, 504, 777, 1124, 1330
DpnII	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
DraIII	CACNNNGTG	1 cut(s)	491
Eam1104I	CTCTTC	2 cut(s)	452, 786
EarI	CTCTTC	2 cut(s)	452, 786
EciI	GGCGGA	1 cut(s)	876
Eco130I	CCWWGG	3 cut(s)	241, 1219, 1349
Eco31I	GGTCTC	2 cut(s)	386, 449
Eco32I	GATATC	1 cut(s)	1243
Eco47I	GGWCC	2 cut(s)	97, 230
Eco57I	CTGAAG	1 cut(s)	1155
Eco81I	CCTNAGG	1 cut(s)	786
EcoNI	CCTNNNNNAGG	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	108
EcoRV	GATATC	1 cut(s)	1243
EcoT14I	CCWWGG	3 cut(s)	241, 1219, 1349
EcoT22I	ATGCAT	1 cut(s)	676
ErhI	CCWWGG	3 cut(s)	241, 1219, 1349
FaeI	CATG	7 cut(s)	50, 245, 525, 1091, 1114, 1310, 1353
FatI	CATG	7 cut(s)	46, 241, 521, 1087, 1110, 1306, 1349
FbaI	TGATCA	2 cut(s)	247, 334
FblI	GTMKAC	1 cut(s)	298
Fnu4HI	GCNGC	5 cut(s)	66, 357, 861, 1104, 1374
FokI	GGATG	3 cut(s)	117, 452, 622
Fsp4HI	GCNGC	5 cut(s)	66, 357, 861, 1104, 1374
FspBI	CTAG	1 cut(s)	419
GluI	GCNGC	5 cut(s)	66, 357, 861, 1104, 1374
GsuI	CTGGAG	1 cut(s)	772
HaeIII	GGCC	2 cut(s)	324, 1447
Hin1II	CATG	7 cut(s)	50, 245, 525, 1091, 1114, 1310, 1353
HindIII	AAGCTT	1 cut(s)	917
HinfI	GANTC	5 cut(s)	105, 149, 565, 605, 632
HphI	GGTGA	6 cut(s)	12, 230, 257, 477, 774, 1291
Hpy166II	GTNNAC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	391, 801, 1122, 1407
Hpy188III	TCNNGA	8 cut(s)	82, 497, 562, 704, 788, 943, 1111, 1171
Hpy8I	GTNNAC	1 cut(s)	299
HpyAV	CCTTC	9 cut(s)	33, 324, 593, 624, 716, 861, 865, 1313, 1420
HpyCH4III	ACNGT	2 cut(s)	718, 1420
HpyCH4IV	ACGT	4 cut(s)	172, 1008, 1140, 1235
HpyCH4V	TGCA	9 cut(s)	65, 130, 159, 468, 674, 860, 984, 1106, 1400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	650, 1373
HpyF3I	CTNAG	4 cut(s)	640, 687, 786, 967
HpySE526I	ACGT	4 cut(s)	172, 1008, 1140, 1235
Hsp92II	CATG	7 cut(s)	50, 245, 525, 1091, 1114, 1310, 1353
Ksp22I	TGATCA	2 cut(s)	247, 334
Kzo9I	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
LguI	GCTCTTC	1 cut(s)	786
Lsp1109I	GCAGC	5 cut(s)	77, 368, 872, 1090, 1360
LweI	GCATC	2 cut(s)	139, 168
MaeI	CTAG	1 cut(s)	419
MaeII	ACGT	4 cut(s)	172, 1008, 1140, 1235
MaeIII	GTNAC	4 cut(s)	483, 1090, 1154, 1231
MalI	GATC	9 cut(s)	45, 249, 336, 417, 495, 504, 777, 1124, 1330
MboI	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
MfeI	CAATTG	2 cut(s)	60, 821
MflI	RGATCY	1 cut(s)	1328
MmeI	TCCRAC	2 cut(s)	417, 454
MnlI	CCTC	8 cut(s)	29, 795, 807, 855, 946, 1186, 1189, 1270
Mph1103I	ATGCAT	1 cut(s)	676
MroXI	GAANNNNTTC	3 cut(s)	313, 880, 1268
MseI	TTAA	5 cut(s)	404, 513, 698, 828, 936
MslI	CAYNNNNRTG	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	750
MspCI	CTTAAG	1 cut(s)	403
MspR9I	CCNGG	1 cut(s)	110
MunI	CAATTG	2 cut(s)	60, 821
Mva1269I	GAATGC	1 cut(s)	1106
MvaI	CCWGG	1 cut(s)	110
MvnI	CGCG	1 cut(s)	294
MwoI	GCNNNNNNNGC	2 cut(s)	650, 1373
NcoI	CCATGG	2 cut(s)	241, 1349
NdeII	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
NlaIII	CATG	7 cut(s)	50, 245, 525, 1091, 1114, 1310, 1353
NmuCI	GTSAC	3 cut(s)	483, 1154, 1231
NsiI	ATGCAT	1 cut(s)	676
NspI	RCATGY	2 cut(s)	1091, 1310
OliI	CACNNNNGTG	1 cut(s)	243
PagI	TCATGA	1 cut(s)	1110
PaqCI	CACCTGC	1 cut(s)	337
PciSI	GCTCTTC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	2 cut(s)	805, 1014
PctI	GAATGC	1 cut(s)	1106
PdmI	GAANNNNTTC	3 cut(s)	313, 880, 1268
PfeI	GAWTC	5 cut(s)	105, 149, 565, 605, 632
PfoI	TCCNGGA	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	67, 358, 862, 1105, 1375
Ppu21I	YACGTR	1 cut(s)	1009
Psp6I	CCWGG	1 cut(s)	108
PspGI	CCWGG	1 cut(s)	108
PspPI	GGNCC	4 cut(s)	97, 230, 323, 1445
PsuI	RGATCY	1 cut(s)	1328
RsaI	GTAC	3 cut(s)	171, 1289, 1345
RsaNI	GTAC	3 cut(s)	170, 1288, 1344
RseI	CAYNNNNRTG	1 cut(s)	243
SapI	GCTCTTC	1 cut(s)	786
SaqAI	TTAA	5 cut(s)	404, 513, 698, 828, 936
SatI	GCNGC	5 cut(s)	66, 357, 861, 1104, 1374
Sau3AI	GATC	9 cut(s)	43, 247, 334, 415, 493, 502, 775, 1122, 1328
Sau96I	GGNCC	4 cut(s)	97, 230, 323, 1445
ScrFI	CCNGG	1 cut(s)	110
SfaNI	GCATC	2 cut(s)	139, 168
SinI	GGWCC	2 cut(s)	97, 230
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
SsiI	CCGC	5 cut(s)	185, 294, 748, 887, 1126
SspMI	CTAG	1 cut(s)	419
StyD4I	CCNGG	1 cut(s)	108
StyI	CCWWGG	3 cut(s)	241, 1219, 1349
TaaI	ACNGT	2 cut(s)	718, 1420
TaiI	ACGT	4 cut(s)	175, 1011, 1143, 1238
TaqI	TCGA	5 cut(s)	307, 561, 1017, 1170, 1245
TfiI	GAWTC	5 cut(s)	105, 149, 565, 605, 632
Tru1I	TTAA	5 cut(s)	404, 513, 698, 828, 936
Tru9I	TTAA	5 cut(s)	404, 513, 698, 828, 936
TscAI	CASTG	3 cut(s)	415, 963, 1402
TseFI	GTSAC	3 cut(s)	483, 1154, 1231
TseI	GCWGC	5 cut(s)	65, 356, 860, 1103, 1373
Tsp45I	GTSAC	3 cut(s)	483, 1154, 1231
TspDTI	ATGAA	7 cut(s)	17, 618, 624, 1058, 1099, 1193, 1440
TspGWI	ACGGA	1 cut(s)	1042
TspRI	CASTG	3 cut(s)	415, 963, 1402
Vha464I	CTTAAG	1 cut(s)	403
VpaK11BI	GGWCC	2 cut(s)	97, 230
XagI	CCTNNNNNAGG	1 cut(s)	849
XapI	RAATTY	3 cut(s)	570, 999, 1045
XceI	RCATGY	2 cut(s)	1091, 1310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XmiI	GTMKAC	1 cut(s)	298
XmnI	GAANNNNTTC	3 cut(s)	313, 880, 1268
XspI	CTAG	1 cut(s)	419
Zsp2I	ATGCAT	1 cut(s)	676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.