Rorug07G0236000

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0002062
Physical Location & Seq
Reverse (-)
21648838 .. 21649240
403 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0236000.1

Sequence Viewer

Length: 321 bp
ATGGCTCAGATCTTCGAGAACTTCGTTGTCTATGGGATCGGACCGGAGATCCGAACCCTCGACGGCGCCAGAGGCTTCCACGGCTTCACCGAAATGTACCTGCCGTCTTTGCTCGACCAGTTCCCTCCCGCCAACCACACTCTTTACCCTCCTCCGCCGACTCAGCTCCCCACCTGTGTGTTGCCGGCTGGCGTTTCATTCTACTCATTAGGATTTGATTCCAGTGATGCGACGACATTTCCATTGAGCTATCCCATTGTTCTAACTGGTGAGGTGCCGGGGGGTGGAAAATGGGTCGTCGATGTCACAGGCGGCGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

106

Amino Acids

11.32

Weight (kDa)

4.35

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
uDENN PF03456 35 - 91 7.3e-07 uDENN domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 108
AccB1I GGYRCC 2 cut(s) 65, 274
AccII CGCG 1 cut(s) 317
AciI CCGC 3 cut(s) 129, 155, 312
AclWI GGATC 2 cut(s) 43, 44
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 284
AleI CACNNNNGTG 1 cut(s) 176
AluBI AGCT 2 cut(s) 166, 249
AluI AGCT 2 cut(s) 166, 249
AlwI GGATC 2 cut(s) 43, 44
AspLEI GCGC 2 cut(s) 68, 317
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 279
AsuHPI GGTGA 2 cut(s) 79, 281
AvaII GGWCC 1 cut(s) 41
BanI GGYRCC 2 cut(s) 65, 274
BceAI ACGGC 3 cut(s) 79, 88, 97
BcnI CCSGG 1 cut(s) 279
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 108
BglII AGATCT 1 cut(s) 9
BisI GCNGC 1 cut(s) 313
BlsI GCNGC 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 67, 276
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 217
BpuMI CCSGG 1 cut(s) 279
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 2 cut(s) 79, 278
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 284
Bse118I RCCGGY 1 cut(s) 184
Bse1I ACTGG 3 cut(s) 118, 222, 271
BseDI CCNNGG 2 cut(s) 79, 278
BseLI CCNNNNNNNGG 1 cut(s) 284
BseMII CTCAG 2 cut(s) 20, 176
BseNI ACTGG 3 cut(s) 118, 222, 271
BseRI GAGGAG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 317
BshNI GGYRCC 2 cut(s) 65, 274
BsiSI CCGG 3 cut(s) 44, 185, 278
BslI CCNNNNNNNGG 1 cut(s) 284
Bsp143I GATC 3 cut(s) 9, 36, 48
BspACI CCGC 3 cut(s) 129, 155, 312
BspCNI CTCAG 2 cut(s) 19, 175
BspFNI CGCG 1 cut(s) 317
BspLI GGNNCC 2 cut(s) 67, 276
BspMI ACCTGC 1 cut(s) 108
BspPI GGATC 2 cut(s) 43, 44
BspT107I GGYRCC 2 cut(s) 65, 274
BsrFI RCCGGY 1 cut(s) 184
BsrI ACTGG 3 cut(s) 118, 222, 271
BssAI RCCGGY 1 cut(s) 184
BssECI CCNNGG 2 cut(s) 79, 278
BssMI GATC 3 cut(s) 9, 36, 48
BssNI GRCGYC 1 cut(s) 66
BstACI GRCGYC 1 cut(s) 66
BstC8I GCNNGC 2 cut(s) 186, 190
BstDEI CTNAG 2 cut(s) 6, 162
BstDSI CCRYGG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 317
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 2 cut(s) 68, 317
BstKTI GATC 3 cut(s) 12, 39, 51
BstMBI GATC 3 cut(s) 9, 36, 48
BstMWI GCNNNNNNNGC 4 cut(s) 72, 81, 109, 163
BstSCI CCNGG 1 cut(s) 277
BstUI CGCG 1 cut(s) 317
BstX2I RGATCY 2 cut(s) 9, 48
BstYI RGATCY 2 cut(s) 9, 48
BtgI CCRYGG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 229
BveI ACCTGC 1 cut(s) 108
Cac8I GCNNGC 2 cut(s) 186, 190
CfoI GCGC 2 cut(s) 68, 317
Cfr10I RCCGGY 1 cut(s) 184
Cfr13I GGNCC 1 cut(s) 41
CpoI CGGWCCG 1 cut(s) 41
Csp6I GTAC 1 cut(s) 97
CspI CGGWCCG 1 cut(s) 41
CviJI RGCY 6 cut(s) 5, 75, 84, 166, 188, 249
CviKI_1 RGCY 6 cut(s) 5, 75, 84, 166, 188, 249
CviQI GTAC 1 cut(s) 97
DdeI CTNAG 2 cut(s) 6, 162
DinI GGCGCC 1 cut(s) 67
DpnI GATC 3 cut(s) 11, 38, 50
DpnII GATC 3 cut(s) 9, 36, 48
EciI GGCGGA 1 cut(s) 144
Eco47I GGWCC 1 cut(s) 41
EgeI GGCGCC 1 cut(s) 67
EheI GGCGCC 1 cut(s) 67
FaiI YATR 1 cut(s) 33
FauI CCCGC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 313
GlaI GCGC 2 cut(s) 67, 316
GluI GCNGC 1 cut(s) 313
HaeII RGCGCY 1 cut(s) 69
HapII CCGG 3 cut(s) 44, 185, 278
HhaI GCGC 2 cut(s) 68, 317
Hin1I GRCGYC 1 cut(s) 66
Hin6I GCGC 2 cut(s) 66, 315
HinP1I GCGC 2 cut(s) 66, 315
HinfI GANTC 2 cut(s) 160, 218
HpaII CCGG 3 cut(s) 44, 185, 278
HphI GGTGA 2 cut(s) 79, 281
Hpy188I TCNGA 3 cut(s) 9, 41, 53
Hpy188III TCNNGA 1 cut(s) 16
Hpy99I CGWCG 3 cut(s) 65, 235, 302
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 81, 109, 163
HpyF3I CTNAG 2 cut(s) 6, 162
Hsp92I GRCGYC 1 cut(s) 66
HspAI GCGC 2 cut(s) 66, 315
KasI GGCGCC 1 cut(s) 65
KroI GCCGGC 1 cut(s) 184
KroNI GCCGGC 1 cut(s) 186
Kzo9I GATC 3 cut(s) 9, 36, 48
LmnI GCTCC 1 cut(s) 171
LweI GCATC 1 cut(s) 217
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 11, 38, 50
MboI GATC 3 cut(s) 9, 36, 48
MboII GAAGA 1 cut(s) 4
MflI RGATCY 2 cut(s) 9, 48
Mly113I GGCGCC 1 cut(s) 66
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 6 cut(s) 65, 68, 135, 159, 162, 265
MroNI GCCGGC 1 cut(s) 184
MslI CAYNNNNRTG 2 cut(s) 92, 176
MspI CCGG 3 cut(s) 44, 185, 278
MspR9I CCNGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 317
MwoI GCNNNNNNNGC 4 cut(s) 72, 81, 109, 163
NaeI GCCGGC 1 cut(s) 186
NarI GGCGCC 1 cut(s) 66
NciI CCSGG 1 cut(s) 279
NdeII GATC 3 cut(s) 9, 36, 48
NgoMIV GCCGGC 1 cut(s) 184
NlaIV GGNNCC 2 cut(s) 67, 276
NmuCI GTSAC 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 21, 87
PdiI GCCGGC 1 cut(s) 186
PfeI GAWTC 1 cut(s) 218
PkrI GCNGC 1 cut(s) 314
PleI GAGTC 1 cut(s) 154
PluTI GGCGCC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 67, 276
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 2 cut(s) 9, 48
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
RseI CAYNNNNRTG 2 cut(s) 92, 176
Rsr2I CGGWCCG 1 cut(s) 41
RsrII CGGWCCG 1 cut(s) 41
SatI GCNGC 1 cut(s) 313
Sau3AI GATC 3 cut(s) 9, 36, 48
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 279
SetI ASST 5 cut(s) 102, 168, 176, 251, 276
SfaNI GCATC 1 cut(s) 217
SfoI GGCGCC 1 cut(s) 67
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 92, 176
SsiI CCGC 3 cut(s) 129, 155, 312
SspDI GGCGCC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 277
TaqI TCGA 4 cut(s) 15, 60, 114, 300
TauI GCSGC 1 cut(s) 315
TfiI GAWTC 1 cut(s) 218
TscAI CASTG 1 cut(s) 229
TseFI GTSAC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 1 cut(s) 186
TspRI CASTG 1 cut(s) 229
VpaK11BI GGWCC 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.