AT3G44710

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0002062
Physical Location & Seq
Reverse (-)
16251802 .. 16253535
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44710.1

Sequence Viewer

Length: 1515 bp
ATGAACCCTCGTGAAGAAGCAAAGAGAGGAAACAATGATGAAGACAATGGTGGTATAGTTGTAGAAGAACCACATGATTTATTTTCAAGAGAATCGGCCCTCCCAAAGCTTCTGAGGGAATCAGCCGGTGGAAAAAAGTGTTGCATCTTTAAAATCTCTCATAAACCCGAAAACAAGAAGTACAAGGCCGCTTATGAACCTAGAGTTGTATCACTCGGCCCATACCATCACGGAAAAAAGAATCTACAGATGATTGAAGAGCACAAACTTAGATTCCTCAAGATTTTCATGGATGAAGCCAAAAGAAAGGGTGTGGATACGAATGGTCTGATCAAAGCAGTTTCAGTCTTGGAGGAAGATATAAGAGACTCGTACTCGGAGAGCCTCTATAGTGATGGGAAGAAATTGATTGAAATGATGGTTCTTGATGGTTGCTTCATCCTGATGATATTTCTGGTGGTAGCTGGAGTAGTCAGCCACTCTGAGATTGAGAATGATCCTATTTTTGCAATCCCATGGATTCTACCGGCTATAAGGAATGACCTAATACTTTTGGAGAATCAGGTTCCGTTCTTTCTTCTTCAAACTATATTTGATAGATCGAAGATAGAAAAATCGAGTGGGCTAAATGAGATTATATTTCATTTCTTCAACTATTCCTTACAAAAATCAAATACGTTTTGGTTAAAACACCAAAAAGTTGAGGCAAATCATCTTCTTGATTTGATTCGAAATATTTACATGCCTGATGTTCCTAAAGAAGAAAAAAAGTCAAATCATCTTCTTGATTGTATGATGATCCGGAAGATATGTATGCCTAGAGAATCAAAACAAGAATTGGATGTCATGCTCAAGAAAGGAAAACAGGAAGTGGATATTTCCATGCTGGAAGAAGGAATACCAAAATCAGATTCGCTCGAAGAAGAAGATAGTACTACTGGTCGCCATCATCTGAAAATGGTTCTTTCAGCAAGAAAACTTCAGTTGAAGGGGATAAAGTTCAAAGCGAGGAAAAAAGCAGAAACACTAATGGACATAAGGCATAAGGGGAAACTCCTCCAGATACCACCATTGATCTTGGATGACTTTCTCATTGCTGTCTTACTTAACTGTGTTGCATTTGAACAGTATTATTCTTATTGTACCAAGCAGCACATGACGAGCTATGTAGCTTTCATGGGATGTCTTCTCAAAAGCGAGGCTGATGCGATGTTTCTAAGCGAAGTAGGGATTCTAGAGAACTATTTCGGGTCAGGGGATGAAGTCTCCCGATTCTTTAAGGTTGTTGGTAAAGATGTCTTATTTGACATTGATGAAAGTTACTTAGCTGGTATTTTCGAAGGAGTTAATAAGTATACTTCAAGTGGATGGCATGTACAATGGGCGGGATTCAAGCATACCCATTTTGATAGTCCTTGGACAGCTCTTTCATCTTGCGCTGCTTTGACGCTTGTCATTCTCACGATAATTCAAGCCTTTTTTGCAGCGTATGGCTATTTTCATCCGCCTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

504

Amino Acids

57.74

Weight (kDa)

6.82

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 49 - 487 1.3e-107 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1355
AccIII TCCGGA 1 cut(s) 801
AciI CCGC 3 cut(s) 189, 1385, 1505
AclWI GGATC 2 cut(s) 491, 793
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 5 cut(s) 182, 374, 934, 1144, 1377
AjuI GAANNNNNNNTTGG 2 cut(s) 895, 927
AluBI AGCT 6 cut(s) 109, 464, 1164, 1172, 1328, 1424
AluI AGCT 6 cut(s) 109, 464, 1164, 1172, 1328, 1424
Alw21I GWGCWC 1 cut(s) 264
Alw26I GTCTC 2 cut(s) 360, 1270
AlwI GGATC 2 cut(s) 491, 793
Aor13HI TCCGGA 1 cut(s) 801
AoxI GGCC 3 cut(s) 96, 186, 217
ApeKI GCWGC 3 cut(s) 1150, 1439, 1484
Asp700I GAANNNNTTC 1 cut(s) 1244
AspLEI GCGC 1 cut(s) 1439
AspS9I GGNCC 2 cut(s) 97, 218
AsuII TTCGAA 2 cut(s) 730, 1338
BarI GAAGNNNNNNTAC 2 cut(s) 882, 914
BauI CACGAG 1 cut(s) 9
BbsI GAAGAC 2 cut(s) 48, 1178
Bbv12I GWGCWC 1 cut(s) 264
BbvI GCAGC 3 cut(s) 1162, 1426, 1496
BccI CCATC 6 cut(s) 234, 389, 412, 422, 954, 1362
BcgI CGANNNNNNTGC 2 cut(s) 1187, 1221
BciVI GTATCC 1 cut(s) 310
BclI TGATCA 1 cut(s) 330
BcoDI GTCTC 2 cut(s) 360, 1270
BfaI CTAG 3 cut(s) 201, 819, 1235
BfmI CTRYAG 2 cut(s) 245, 388
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 4 cut(s) 189, 1151, 1440, 1485
BlsI GCNGC 4 cut(s) 190, 1152, 1441, 1486
BmcAI AGTACT 1 cut(s) 934
BmgT120I GGNCC 2 cut(s) 97, 218
BmiI GGNNCC 1 cut(s) 567
BmsI GCATC 2 cut(s) 153, 1195
BoxI GACNNNNGTC 1 cut(s) 1451
BpiI GAAGAC 2 cut(s) 48, 1178
BpmI CTGGAG 2 cut(s) 486, 1043
Bpu14I TTCGAA 2 cut(s) 730, 1338
BpuEI CTTGAG 2 cut(s) 263, 836
BsaJI CCNNGG 2 cut(s) 515, 1415
BsaWI WCCGGW 1 cut(s) 801
Bse118I RCCGGY 2 cut(s) 125, 526
Bse1I ACTGG 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 1092
BseAI TCCGGA 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 515, 1415
BseGI GGATG 8 cut(s) 298, 438, 847, 1087, 1187, 1264, 1373, 1501
BseMI GCAATG 1 cut(s) 1092
BseMII CTCAG 2 cut(s) 104, 474
BseNI ACTGG 1 cut(s) 943
BseRI GAGGAG 1 cut(s) 1046
BseXI GCAGC 3 cut(s) 1162, 1426, 1496
BshFI GGCC 3 cut(s) 98, 188, 219
BsiHKAI GWGCWC 1 cut(s) 264
BsiSI CCGG 3 cut(s) 126, 527, 802
BsmAI GTCTC 2 cut(s) 360, 1270
BsnI GGCC 3 cut(s) 98, 188, 219
Bsp119I TTCGAA 2 cut(s) 730, 1338
Bsp1286I GDGCHC 1 cut(s) 264
Bsp13I TCCGGA 1 cut(s) 801
Bsp1407I TGTACA 1 cut(s) 1375
Bsp143I GATC 5 cut(s) 330, 496, 599, 798, 1074
Bsp19I CCATGG 1 cut(s) 515
BspACI CCGC 3 cut(s) 189, 1385, 1505
BspANI GGCC 3 cut(s) 98, 188, 219
BspCNI CTCAG 2 cut(s) 105, 475
BspEI TCCGGA 1 cut(s) 801
BspLI GGNNCC 1 cut(s) 567
BspPI GGATC 2 cut(s) 491, 793
BspQI GCTCTTC 1 cut(s) 252
BspT104I TTCGAA 2 cut(s) 730, 1338
BsrDI GCAATG 1 cut(s) 1092
BsrFI RCCGGY 2 cut(s) 125, 526
BsrGI TGTACA 1 cut(s) 1375
BsrI ACTGG 1 cut(s) 943
BssAI RCCGGY 2 cut(s) 125, 526
BssECI CCNNGG 2 cut(s) 515, 1415
BssMI GATC 5 cut(s) 330, 496, 599, 798, 1074
BssNAI GTATAC 1 cut(s) 1356
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 2 cut(s) 515, 1415
Bst1107I GTATAC 1 cut(s) 1356
Bst2BI CACGAG 1 cut(s) 9
Bst4CI ACNGT 2 cut(s) 1112, 1128
Bst6I CTCTTC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 1375
BstBI TTCGAA 2 cut(s) 730, 1338
BstDEI CTNAG 6 cut(s) 113, 269, 483, 1217, 1324, 1509
BstDSI CCRYGG 1 cut(s) 515
BstF5I GGATG 8 cut(s) 298, 438, 847, 1087, 1187, 1264, 1373, 1501
BstHHI GCGC 1 cut(s) 1439
BstKTI GATC 5 cut(s) 333, 499, 602, 801, 1077
BstMAI GTCTC 2 cut(s) 360, 1270
BstMBI GATC 5 cut(s) 330, 496, 599, 798, 1074
BstMWI GCNNNNNNNGC 1 cut(s) 1481
BstNSI RCATGY 2 cut(s) 745, 1376
BstPAI GACNNNNGTC 1 cut(s) 1451
BstSFI CTRYAG 2 cut(s) 245, 388
BstV1I GCAGC 3 cut(s) 1162, 1426, 1496
BstV2I GAAGAC 2 cut(s) 48, 1178
BstZ17I GTATAC 1 cut(s) 1356
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 3 cut(s) 98, 188, 219
BtgI CCRYGG 1 cut(s) 515
BtgZI GCGATG 1 cut(s) 1223
BtsCI GGATG 8 cut(s) 298, 438, 847, 1087, 1187, 1264, 1373, 1501
CfoI GCGC 1 cut(s) 1439
Cfr10I RCCGGY 2 cut(s) 125, 526
Cfr13I GGNCC 2 cut(s) 97, 218
CseI GACGC 1 cut(s) 1456
Csp6I GTAC 5 cut(s) 181, 373, 933, 1143, 1376
CviAII CATG 9 cut(s) 74, 289, 516, 742, 847, 883, 1156, 1177, 1373
CviQI GTAC 5 cut(s) 181, 373, 933, 1143, 1376
DdeI CTNAG 6 cut(s) 113, 269, 483, 1217, 1324, 1509
DpnI GATC 5 cut(s) 332, 498, 601, 800, 1076
DpnII GATC 5 cut(s) 330, 496, 599, 798, 1074
DraI TTTAAA 1 cut(s) 151
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
EciI GGCGGA 1 cut(s) 1494
Eco130I CCWWGG 2 cut(s) 515, 1415
Eco57I CTGAAG 1 cut(s) 965
EcoT14I CCWWGG 2 cut(s) 515, 1415
ErhI CCWWGG 2 cut(s) 515, 1415
FaeI CATG 9 cut(s) 77, 292, 519, 745, 850, 886, 1159, 1180, 1376
FatI CATG 9 cut(s) 73, 288, 515, 741, 846, 882, 1155, 1176, 1372
FauI CCCGC 1 cut(s) 1378
FbaI TGATCA 1 cut(s) 330
FblI GTMKAC 1 cut(s) 1355
Fnu4HI GCNGC 4 cut(s) 189, 1151, 1440, 1485
FokI GGATG 8 cut(s) 305, 425, 854, 1094, 1194, 1271, 1380, 1488
Fsp4HI GCNGC 4 cut(s) 189, 1151, 1440, 1485
FspBI CTAG 3 cut(s) 201, 819, 1235
GlaI GCGC 1 cut(s) 1438
GluI GCNGC 4 cut(s) 189, 1151, 1440, 1485
GsuI CTGGAG 2 cut(s) 486, 1043
HaeIII GGCC 3 cut(s) 98, 188, 219
HapII CCGG 3 cut(s) 126, 527, 802
HgaI GACGC 1 cut(s) 1456
HhaI GCGC 1 cut(s) 1439
Hin1II CATG 9 cut(s) 77, 292, 519, 745, 850, 886, 1159, 1180, 1376
Hin6I GCGC 1 cut(s) 1437
HinP1I GCGC 1 cut(s) 1437
HindIII AAGCTT 1 cut(s) 107
HpaII CCGG 3 cut(s) 126, 527, 802
Hpy166II GTNNAC 1 cut(s) 1356
Hpy188I TCNGA 6 cut(s) 114, 330, 379, 484, 910, 954
Hpy8I GTNNAC 1 cut(s) 1356
HpyAV CCTTC 3 cut(s) 887, 982, 1334
HpyCH4III ACNGT 2 cut(s) 1112, 1128
HpyCH4IV ACGT 1 cut(s) 677
HpyCH4V TGCA 4 cut(s) 144, 509, 1118, 1484
HpyF10VI GCNNNNNNNGC 1 cut(s) 1481
HpyF3I CTNAG 6 cut(s) 113, 269, 483, 1217, 1324, 1509
HpySE526I ACGT 1 cut(s) 677
Hsp92II CATG 9 cut(s) 77, 292, 519, 745, 850, 886, 1159, 1180, 1376
HspAI GCGC 1 cut(s) 1437
Kpn2I TCCGGA 1 cut(s) 801
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 5 cut(s) 330, 496, 599, 798, 1074
LguI GCTCTTC 1 cut(s) 252
Lsp1109I GCAGC 3 cut(s) 1162, 1426, 1496
LweI GCATC 2 cut(s) 153, 1195
MaeI CTAG 3 cut(s) 201, 819, 1235
MaeII ACGT 1 cut(s) 677
MaeIII GTNAC 1 cut(s) 1319
MalI GATC 5 cut(s) 332, 498, 601, 800, 1076
MboI GATC 5 cut(s) 330, 496, 599, 798, 1074
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 404, 836, 1467
MlyI GAGTC 1 cut(s) 362
MroI TCCGGA 1 cut(s) 801
MroXI GAANNNNTTC 1 cut(s) 1244
MseI TTAA 5 cut(s) 150, 686, 1107, 1278, 1347
MslI CAYNNNNRTG 1 cut(s) 443
MspI CCGG 3 cut(s) 126, 527, 802
MwoI GCNNNNNNNGC 1 cut(s) 1481
NcoI CCATGG 1 cut(s) 515
NdeII GATC 5 cut(s) 330, 496, 599, 798, 1074
NlaIII CATG 9 cut(s) 77, 292, 519, 745, 850, 886, 1159, 1180, 1376
NlaIV GGNNCC 1 cut(s) 567
NmeAIII GCCGAG 1 cut(s) 195
NspI RCATGY 2 cut(s) 745, 1376
NspV TTCGAA 2 cut(s) 730, 1338
PciSI GCTCTTC 1 cut(s) 252
PdmI GAANNNNTTC 1 cut(s) 1244
PkrI GCNGC 4 cut(s) 190, 1152, 1441, 1486
PleI GAGTC 1 cut(s) 362
PpsI GAGTC 1 cut(s) 362
PshAI GACNNNNGTC 1 cut(s) 1451
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 2 cut(s) 97, 218
RsaI GTAC 5 cut(s) 182, 374, 934, 1144, 1377
RsaNI GTAC 5 cut(s) 181, 373, 933, 1143, 1376
RseI CAYNNNNRTG 1 cut(s) 443
SapI GCTCTTC 1 cut(s) 252
SaqAI TTAA 5 cut(s) 150, 686, 1107, 1278, 1347
SatI GCNGC 4 cut(s) 189, 1151, 1440, 1485
Sau3AI GATC 5 cut(s) 330, 496, 599, 798, 1074
Sau96I GGNCC 2 cut(s) 97, 218
ScaI AGTACT 1 cut(s) 934
SchI GAGTC 1 cut(s) 362
SduI GDGCHC 1 cut(s) 264
SfaNI GCATC 2 cut(s) 153, 1195
SfcI CTRYAG 2 cut(s) 245, 388
SfuI TTCGAA 2 cut(s) 730, 1338
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 2 cut(s) 278, 851
SmoI CTYRAG 2 cut(s) 278, 851
Sse9I AATT 3 cut(s) 404, 836, 1467
SsiI CCGC 3 cut(s) 189, 1385, 1505
SspI AATATT 1 cut(s) 736
SspMI CTAG 3 cut(s) 201, 819, 1235
StyI CCWWGG 2 cut(s) 515, 1415
TaaI ACNGT 2 cut(s) 1112, 1128
TaiI ACGT 1 cut(s) 680
TaqI TCGA 5 cut(s) 602, 617, 730, 918, 1338
TasI AATT 3 cut(s) 404, 836, 1467
TatI WGTACW 3 cut(s) 180, 932, 1375
TauI GCSGC 1 cut(s) 191
Tru1I TTAA 5 cut(s) 150, 686, 1107, 1278, 1347
Tru9I TTAA 5 cut(s) 150, 686, 1107, 1278, 1347
TseI GCWGC 3 cut(s) 1150, 1439, 1484
TspGWI ACGGA 2 cut(s) 246, 558
XbaI TCTAGA 1 cut(s) 1234
XceI RCATGY 2 cut(s) 745, 1376
XmiI GTMKAC 1 cut(s) 1355
XmnI GAANNNNTTC 1 cut(s) 1244
XspI CTAG 3 cut(s) 201, 819, 1235
ZrmI AGTACT 1 cut(s) 934
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.