Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002435.1

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Forward (+)

45839 .. 47122

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002435.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

atgttcaattggaccacatcgttggagcaaagaatcgcagaaacagaatggttattacacccatcagccggaaacgagtcttgttgcatcttcagagtgcctcaactctataaggatacaaacaagaagtcctacgagcctcgtatagtctccattggtccatatcaccacggtaaaaaacatttgaagatgatgcagcagcacaaatggagatttcttcacgatctccttactcgaacaccatcaactggctcaagacttgatgactacctgcgcgaggtaacatcaatggaagaagtcatacgaaattgctattcagagacactcaaatttagcaaccgagagcttgttgagatgatggtgttggatggtctctttattattgaagtgttttgcaagatagaaaaattatcaccaatgggtaatggtgaccccatcttcaacatggcatgggtcatcattcagctcatccaagatcttttactgttagagaaccaaattccattcatggttcttcaaaaattgtttgatacatcaagatcttccagaaaagatagtaactcaacacttgccgaactttctctgaaattctttggcaactatgaattacgaataccttatggaaatgctcaaggaagacattttcttgatctacttcgcttgaattttatccctagggaaatgaggctccccagtaaacctcgagaagattatgaagttcaattatgtatccagtcagctacaaagcttcatctagctggagtaaagttcaagccaaggaaggcaaggagcttcctagatatcaaattttctgatggagtccttgaaatcccagaggtaagactaggcgatcactctaccgatctattcctgaatttcattgcatttgaacaatgctactatcattctccaagacacataactacttatgttgtattcatgtgttccctaatccgcacgcctaaggacgtagagtttctctgtgataatagtattatcgagaactattcatcttatgaggatattgcaatttttttcagaaacgtgggcaaaggtgtgacttttgattttgaacagggtcacctactgaatctgttcaacgatgtaaatgagtaccaaaaaaatatttgtcacgtgcgatgggcagaatttaggttcaagtacttcgattcaccttggtctttcttgtctgctttagctgctgtcatactcttaatattcactgcaattcaagccttctttgctgtttatgcatatttgttcccaccagaatctggtaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

427

Amino Acids

50.03

Weight (kDa)

6.9

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccB7I	CCANNNNNTGG	2 cut(s)	248, 1274
AccII	CGCG	1 cut(s)	276
AciI	CCGC	1 cut(s)	955
AcsI	RAATTY	7 cut(s)	329, 498, 587, 664, 806, 874, 1148
AcuI	CTGAAG	1 cut(s)	76
AcvI	CACGTG	1 cut(s)	1135
AfaI	GTAC	2 cut(s)	1115, 1163
AfiI	CCNNNNNNNGG	4 cut(s)	68, 248, 277, 1274
AluBI	AGCT	7 cut(s)	346, 466, 740, 748, 758, 792, 1199
AluI	AGCT	7 cut(s)	346, 466, 740, 748, 758, 792, 1199
Alw26I	GTCTC	3 cut(s)	154, 314, 377
AlwNI	CAGNNNCTG	1 cut(s)	1274
Ama87I	CYCGRG	1 cut(s)	702
ApeKI	GCWGC	3 cut(s)	196, 199, 1199
ApoI	RAATTY	7 cut(s)	329, 498, 587, 664, 806, 874, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	113, 145
Asp700I	GAANNNNTTC	1 cut(s)	1094
AspA2I	CCTAGG	1 cut(s)	674
AspLEI	GCGC	1 cut(s)	276
AspS9I	GGNCC	2 cut(s)	12, 158
AsuHPI	GGTGA	5 cut(s)	158, 405, 440, 1073, 1164
AvaI	CYCGRG	1 cut(s)	702
AvaII	GGWCC	2 cut(s)	12, 158
AvrII	CCTAGG	1 cut(s)	674
AxyI	CCTNAGG	1 cut(s)	963
BarI	GAAGNNNNNNTAC	2 cut(s)	285, 317
BbrPI	CACGTG	1 cut(s)	1135
BbsI	GAAGAC	1 cut(s)	643
BbvI	GCAGC	3 cut(s)	208, 211, 1186
BccI	CCATC	7 cut(s)	70, 250, 352, 362, 443, 809, 1134
BciVI	GTATCC	2 cut(s)	109, 740
BcoDI	GTCTC	3 cut(s)	154, 314, 377
BfaI	CTAG	4 cut(s)	675, 755, 797, 845
BfuAI	ACCTGC	1 cut(s)	279
BfuI	GTATCC	2 cut(s)	109, 740
BglII	AGATCT	2 cut(s)	475, 539
BisI	GCNGC	3 cut(s)	197, 200, 1200
BlnI	CCTAGG	1 cut(s)	674
BlsI	GCNGC	3 cut(s)	198, 201, 1201
BmcAI	AGTACT	1 cut(s)	1163
Bme18I	GGWCC	2 cut(s)	12, 158
BmeT110I	CYCGRG	1 cut(s)	702
BmgT120I	GGNCC	2 cut(s)	12, 158
BmiI	GGNNCC	1 cut(s)	689
BmrI	ACTGGG	1 cut(s)	687
BmsI	GCATC	2 cut(s)	96, 183
BmuI	ACTGGG	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	643
BpmI	CTGGAG	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	238, 615
BsaAI	YACGTR	1 cut(s)	1135
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	4 cut(s)	169, 674, 776, 1175
Bsc4I	CCNNNNNNNGG	4 cut(s)	68, 248, 277, 1274
Bse1I	ACTGG	3 cut(s)	253, 693, 733
Bse21I	CCTNAGG	1 cut(s)	963
Bse3DI	GCAATG	1 cut(s)	879
BseDI	CCNNGG	4 cut(s)	169, 674, 776, 1175
BseGI	GGATG	2 cut(s)	373, 468
BseLI	CCNNNNNNNGG	4 cut(s)	68, 248, 277, 1274
BseMI	GCAATG	1 cut(s)	879
BseNI	ACTGG	3 cut(s)	253, 693, 733
BseXI	GCAGC	3 cut(s)	208, 211, 1186
Bsh1236I	CGCG	1 cut(s)	276
BsiHKCI	CYCGRG	1 cut(s)	702
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	4 cut(s)	68, 248, 277, 1274
BsmAI	GTCTC	3 cut(s)	154, 314, 377
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	702
Bsp143I	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
BspACI	CCGC	1 cut(s)	955
BspFNI	CGCG	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	689
BspMI	ACCTGC	1 cut(s)	279
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	1 cut(s)	879
BsrI	ACTGG	3 cut(s)	253, 693, 733
BssECI	CCNNGG	4 cut(s)	169, 674, 776, 1175
BssMI	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
BssT1I	CCWWGG	3 cut(s)	674, 776, 1175
Bst4CI	ACNGT	2 cut(s)	173, 486
BstBAI	YACGTR	1 cut(s)	1135
BstC8I	GCNNGC	1 cut(s)	959
BstDEI	CTNAG	1 cut(s)	963
BstDSI	CCRYGG	1 cut(s)	169
BstEII	GGTNACC	2 cut(s)	428, 1079
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	373, 468
BstFNI	CGCG	1 cut(s)	276
BstHHI	GCGC	1 cut(s)	276
BstKTI	GATC	6 cut(s)	226, 478, 542, 652, 853, 865
BstMAI	GTCTC	3 cut(s)	154, 314, 377
BstMBI	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
BstMWI	GCNNNNNNNGC	4 cut(s)	1199, 1232, 1241, 1250
BstPI	GGTNACC	2 cut(s)	428, 1079
BstUI	CGCG	1 cut(s)	276
BstV1I	GCAGC	3 cut(s)	208, 211, 1186
BstV2I	GAAGAC	1 cut(s)	643
BstX2I	RGATCY	2 cut(s)	475, 539
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	2 cut(s)	475, 539
Bsu36I	CCTNAGG	1 cut(s)	963
BsuI	GTATCC	2 cut(s)	109, 740
BtgI	CCRYGG	1 cut(s)	169
BtgZI	GCGATG	1 cut(s)	1153
BtsCI	GGATG	2 cut(s)	373, 468
BtsI	GCAGTG	1 cut(s)	1221
BtsIMutI	CAGTG	1 cut(s)	1221
BveI	ACCTGC	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	959
CaiI	CAGNNNCTG	1 cut(s)	1274
CfoI	GCGC	1 cut(s)	276
Cfr13I	GGNCC	2 cut(s)	12, 158
Csp6I	GTAC	2 cut(s)	1114, 1162
CviAII	CATG	4 cut(s)	445, 450, 508, 940
CviQI	GTAC	2 cut(s)	1114, 1162
DdeI	CTNAG	1 cut(s)	963
DpnI	GATC	6 cut(s)	225, 477, 541, 651, 852, 864
DpnII	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
Eco130I	CCWWGG	3 cut(s)	674, 776, 1175
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	802
Eco47I	GGWCC	2 cut(s)	12, 158
Eco57I	CTGAAG	1 cut(s)	76
Eco72I	CACGTG	1 cut(s)	1135
Eco81I	CCTNAGG	1 cut(s)	963
Eco88I	CYCGRG	1 cut(s)	702
Eco91I	GGTNACC	2 cut(s)	428, 1079
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO65I	GGTNACC	2 cut(s)	428, 1079
EcoRV	GATATC	1 cut(s)	802
EcoT14I	CCWWGG	3 cut(s)	674, 776, 1175
EcoT22I	ATGCAT	1 cut(s)	1255
ErhI	CCWWGG	3 cut(s)	674, 776, 1175
FaeI	CATG	4 cut(s)	448, 453, 511, 943
FatI	CATG	4 cut(s)	444, 449, 507, 939
Fnu4HI	GCNGC	3 cut(s)	197, 200, 1200
FokI	GGATG	2 cut(s)	380, 455
Fsp4HI	GCNGC	3 cut(s)	197, 200, 1200
FspBI	CTAG	4 cut(s)	675, 755, 797, 845
GlaI	GCGC	1 cut(s)	275
GluI	GCNGC	3 cut(s)	197, 200, 1200
GsuI	CTGGAG	1 cut(s)	780
HapII	CCGG	1 cut(s)	69
HhaI	GCGC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	448, 453, 511, 943
Hin6I	GCGC	1 cut(s)	274
HinP1I	GCGC	1 cut(s)	274
HindIII	AAGCTT	1 cut(s)	746
HinfI	GANTC	6 cut(s)	33, 77, 819, 1090, 1169, 1271
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	5 cut(s)	158, 405, 440, 1073, 1164
Hpy166II	GTNNAC	1 cut(s)	698
Hpy188I	TCNGA	5 cut(s)	95, 319, 585, 814, 1040
Hpy188III	TCNNGA	8 cut(s)	221, 255, 537, 546, 647, 704, 871, 1000
Hpy8I	GTNNAC	1 cut(s)	698
HpyAV	CCTTC	2 cut(s)	775, 1246
HpyCH4III	ACNGT	2 cut(s)	173, 486
HpyCH4IV	ACGT	3 cut(s)	969, 1044, 1134
HpyCH4V	TGCA	7 cut(s)	87, 196, 396, 884, 1028, 1226, 1253
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1199, 1232, 1241, 1250
HpyF3I	CTNAG	1 cut(s)	963
HpySE526I	ACGT	3 cut(s)	969, 1044, 1134
Hsp92II	CATG	4 cut(s)	448, 453, 511, 943
HspAI	GCGC	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
LmnI	GCTCC	3 cut(s)	25, 693, 789
Lsp1109I	GCAGC	3 cut(s)	208, 211, 1186
LweI	GCATC	2 cut(s)	96, 183
MaeI	CTAG	4 cut(s)	675, 755, 797, 845
MaeII	ACGT	3 cut(s)	969, 1044, 1134
MaeIII	GTNAC	6 cut(s)	280, 428, 557, 1057, 1079, 1130
MalI	GATC	6 cut(s)	225, 477, 541, 651, 852, 864
MboI	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
MboII	GAAGA	9 cut(s)	82, 199, 209, 305, 430, 506, 534, 648, 719
MfeI	CAATTG	1 cut(s)	7
MflI	RGATCY	2 cut(s)	475, 539
MlyI	GAGTC	2 cut(s)	86, 828
MmeI	TCCRAC	1 cut(s)	345
MnlI	CCTC	7 cut(s)	111, 150, 271, 678, 711, 829, 1012
Mph1103I	ATGCAT	1 cut(s)	1255
MroXI	GAANNNNTTC	1 cut(s)	1094
MseI	TTAA	1 cut(s)	1214
MspI	CCGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	7
MvnI	CGCG	1 cut(s)	276
MwoI	GCNNNNNNNGC	4 cut(s)	1199, 1232, 1241, 1250
NdeII	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
NlaIII	CATG	4 cut(s)	448, 453, 511, 943
NlaIV	GGNNCC	1 cut(s)	689
NmuCI	GTSAC	4 cut(s)	428, 1057, 1079, 1130
NsiI	ATGCAT	1 cut(s)	1255
PaeR7I	CTCGAG	1 cut(s)	702
PdmI	GAANNNNTTC	1 cut(s)	1094
PfeI	GAWTC	4 cut(s)	33, 1090, 1169, 1271
PflMI	CCANNNNNTGG	2 cut(s)	248, 1274
PkrI	GCNGC	3 cut(s)	198, 201, 1201
PleI	GAGTC	2 cut(s)	85, 827
PmaCI	CACGTG	1 cut(s)	1135
PmlI	CACGTG	1 cut(s)	1135
PpsI	GAGTC	2 cut(s)	85, 827
Ppu21I	YACGTR	1 cut(s)	1135
PspCI	CACGTG	1 cut(s)	1135
PspEI	GGTNACC	2 cut(s)	428, 1079
PspN4I	GGNNCC	1 cut(s)	689
PspPI	GGNCC	2 cut(s)	12, 158
PstNI	CAGNNNCTG	1 cut(s)	1274
PsuI	RGATCY	2 cut(s)	475, 539
RsaI	GTAC	2 cut(s)	1115, 1163
RsaNI	GTAC	2 cut(s)	1114, 1162
SaqAI	TTAA	1 cut(s)	1214
SatI	GCNGC	3 cut(s)	197, 200, 1200
Sau3AI	GATC	6 cut(s)	223, 475, 539, 649, 850, 862
Sau96I	GGNCC	2 cut(s)	12, 158
ScaI	AGTACT	1 cut(s)	1163
SchI	GAGTC	2 cut(s)	86, 828
SfaNI	GCATC	2 cut(s)	96, 183
Sfr274I	CTCGAG	1 cut(s)	702
SinI	GGWCC	2 cut(s)	12, 158
SlaI	CTCGAG	1 cut(s)	702
SmlI	CTYRAG	3 cut(s)	253, 630, 702
SmoI	CTYRAG	3 cut(s)	253, 630, 702
SsiI	CCGC	1 cut(s)	955
SspI	AATATT	2 cut(s)	1126, 1218
SspMI	CTAG	4 cut(s)	675, 755, 797, 845
StyI	CCWWGG	3 cut(s)	674, 776, 1175
TaaI	ACNGT	2 cut(s)	173, 486
TaiI	ACGT	3 cut(s)	972, 1047, 1137
TaqI	TCGA	4 cut(s)	235, 703, 999, 1167
TatI	WGTACW	1 cut(s)	1161
TfiI	GAWTC	4 cut(s)	33, 1090, 1169, 1271
Tru1I	TTAA	1 cut(s)	1214
Tru9I	TTAA	1 cut(s)	1214
TscAI	CASTG	1 cut(s)	1228
TseFI	GTSAC	4 cut(s)	428, 1057, 1079, 1130
TseI	GCWGC	3 cut(s)	196, 199, 1199
Tsp45I	GTSAC	4 cut(s)	428, 1057, 1079, 1130
TspDTI	ATGAA	7 cut(s)	496, 618, 729, 740, 868, 928, 999
TspRI	CASTG	1 cut(s)	1228
Van91I	CCANNNNNTGG	2 cut(s)	248, 1274
VpaK11BI	GGWCC	2 cut(s)	12, 158
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	7 cut(s)	329, 498, 587, 664, 806, 874, 1148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	442
XhoI	CTCGAG	1 cut(s)	702
XmaJI	CCTAGG	1 cut(s)	674
XmnI	GAANNNNTTC	1 cut(s)	1094
XspI	CTAG	4 cut(s)	675, 755, 797, 845
ZrmI	AGTACT	1 cut(s)	1163
Zsp2I	ATGCAT	1 cut(s)	1255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.