Rorug02G0105700

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002062
Physical Location & Seq
Reverse (-)
8983639 .. 8987460
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0105700.1

Sequence Viewer

Length: 1734 bp
ATGGACGTTCGCCGGCGACCCCCACTACCTCCCCGCGCCTTCGGCGGCGAACCCATGAAGCAGCACCAGAGAAATCACCCCAAGGCCTCCGACGCGCTACCGTTGCCGCTGTACTTGACCAACGGCTTGTTCTTCACGCTCTTCTTCACCGTCGCTTACTTCCTCCTCCACCGCTGGCGCGAGAAGATCCGCACCTCCATTCCCCTCCACGTCGTCACGCTCTCCGAGATCGCCGCCCTCTTCTCCCTCTTCGCCTCCGTCATCTACCTCCTCGGCTTCTTCGGCATTGACTTCGTCCAGTCCTTCGTCGCCCCCCGCGCTCCCCACGACCCCTGGAACGACGTCGTCAAGGCGCGGCGCCCCCGAAACGATGTCGTAAGGCGGCCACGCCCCAGAAACGACGTCGTAAAGAGGTCGCAGTTAGTGCCGCAGCGCTGCGACACTAACTCTCCTCCTCCTTCTTTTTCGGTACGGCCCGAGCAGGTGGACGAGGAGATAATTAATTCCGTAGTGTCCGGAGAGACGCTGTCGCACACTCTGGAGTCGAATCTCGGGGACTGCCGGAGAGCCGCCGCCATACGGCGGGAGGCCCTGCAGCGAAGGACGAGTCGTTCGCTGGAGGGACTCCCCTTGGAAGGCTTCGATTACGACTCTATACTCGGACAGTGCTGCGAGATGCCGATTGGGTATGTGCAGATTCCGGTGGGAGTCGCCGGACCTCTGCTGCTCGACGGCGAGGAGCTCACTATCCCAATGGCGACCACCGAGGGCTGCCTCGTCGCCAGCACCAACCGAGGCTGCAAGGCCATTTACGCTTCCGGTGGGGCCCACAGCGTCATTCTCAAGGACGGCATGACCAGAGCTCCGGTCGTGAGGTTCAACTCCGCCTTCAGAACCGCCGAGCTCAAGTTCTTCCTGGAGGACCCGGAAAACTTCGATTCTGTTGCCATCGTTTTCAACAGATCTAGTAGATTTGCAAAGCTTCAGGAGATCAAATGCGCGGTTGCAGGCAAGAATCTGTTCATGAGGTTCACATGCAGCACTGGAGATGCGATGGGGATGAACATGGTCTCCAAAGGGGTCCAAAATGTGTTGGATTTTCTCCAGAGTGACTTCCCCGACATGGATGTTATCGGCATCTCCGGGAATTTCTGCTCAGACAAGAAACCGGCAGCGGTGAATTGGATAGAAGGGCGAGGCAAATCAGTAGTGTGCGAGACTGTGATCAATGAAGAAGTGGTGAGGAAGGTACTGAAGACCAATGTAGCTGCCTTGGTGGAGCTCAACATGCTTAAAAACCTTACCGGGTCTGCAATGGCCGGTGCTCTTGGCGGGTTCAATGCCCACGCCAGCAACATTGTCAGCGCAGTGTACATAGCTACCGGCCAGGACCCTGCTCAGAATGTGGAGAGCTCTCACTGCATTACCATGATGGAGGCCATAAACGATGGAAAGGACCTACATGTCTCGGTCACCATGCCTTCCATTGAGGTGGGAACGGTTGGAGGTGGAACACAACTAGCATCACAGTCAGCCTGCCTGAACTTACTGGGAGTTAAGGGTGCCAGCAAGGACTCTCCTGGTTCAAACTCAAGGAAACTAGCCACCATTGTTGCAGGTTCTGTTCTAGCAGGAGAGCTCTCTCTCATGTCAGCCCTTGCAGCAGGTCAGCTAGTTAACAGTCACTTGAAATACAACAGGTCTAGTAAGGATGTGTCAAAACTTGCCTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

577

Amino Acids

62.59

Weight (kDa)

8.71

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMG-CoA_red PF00368 191 - 567 2.4e-145 Hydroxymethylglutaryl-coenzyme A reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 472
AasI GACNNNNNNGTC 1 cut(s) 1463
AatII GACGTC 2 cut(s) 345, 405
Acc36I ACCTGC 3 cut(s) 472, 1607, 1655
AccB1I GGYRCC 2 cut(s) 357, 1562
AccII CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
AccIII TCCGGA 1 cut(s) 515
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 3 cut(s) 383, 1317, 1384
AcsI RAATTY 1 cut(s) 1147
AcuI CTGAAG 3 cut(s) 874, 968, 1274
AcyI GRCGYC 3 cut(s) 342, 358, 402
AfaI GTAC 4 cut(s) 113, 471, 1251, 1373
AfeI AGCGCT 1 cut(s) 434
AfiI CCNNNNNNNGG 4 cut(s) 579, 582, 635, 1123
AflIII ACRYGT 1 cut(s) 1462
AgsI TTSAA 5 cut(s) 880, 958, 1339, 1587, 1690
AjiI CACGTC 1 cut(s) 211
AjnI CCWGG 4 cut(s) 332, 915, 1386, 1579
AjuI GAANNNNNNNTTGG 2 cut(s) 113, 145
AloI GAACNNNNNNTCC 4 cut(s) 595, 627, 1055, 1087
Alw21I GWGCWC 7 cut(s) 744, 865, 906, 1284, 1327, 1415, 1641
Alw26I GTCTC 4 cut(s) 515, 1075, 1211, 1471
AlwI GGATC 1 cut(s) 181
AlwNI CAGNNNCTG 1 cut(s) 1622
Ama87I CYCGRG 2 cut(s) 476, 551
Aor13HI TCCGGA 1 cut(s) 515
Aor51HI AGCGCT 1 cut(s) 434
AoxI GGCC 9 cut(s) 84, 383, 473, 588, 804, 825, 1317, 1384, 1437
ApaI GGGCCC 1 cut(s) 829
ApoI RAATTY 1 cut(s) 1147
ArsI GACNNNNNNTTYG 4 cut(s) 592, 595, 624, 627
AseI ATTAAT 1 cut(s) 501
Asp700I GAANNNNTTC 1 cut(s) 1019
AspLEI GCGC 9 cut(s) 38, 97, 180, 320, 355, 360, 435, 1001, 1367
AspS9I GGNCC 9 cut(s) 474, 589, 716, 825, 826, 922, 1081, 1390, 1456
AsuC2I CCSGG 3 cut(s) 926, 1144, 1306
AsuHPI GGTGA 5 cut(s) 68, 139, 1189, 1252, 1465
AvaI CYCGRG 2 cut(s) 476, 551
AvaII GGWCC 5 cut(s) 716, 922, 1081, 1390, 1456
BaeGI GKGCMC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 357, 1562
BanII GRGCYC 7 cut(s) 744, 829, 865, 906, 1284, 1415, 1641
BbsI GAAGAC 1 cut(s) 1262
Bbv12I GWGCWC 7 cut(s) 744, 865, 906, 1284, 1327, 1415, 1641
BccI CCATC 4 cut(s) 956, 1048, 1426, 1442
BceAI ACGGC 5 cut(s) 139, 488, 596, 748, 865
BcgI CGANNNNNNTGC 4 cut(s) 274, 308, 926, 960
BciT130I CCWGG 4 cut(s) 334, 917, 1388, 1581
BclI TGATCA 1 cut(s) 1224
BcnI CCSGG 3 cut(s) 926, 1144, 1306
BcoDI GTCTC 4 cut(s) 515, 1075, 1211, 1471
BfaI CTAG 6 cut(s) 966, 1520, 1601, 1628, 1673, 1704
BfmI CTRYAG 1 cut(s) 593
BfoI RGCGCY 2 cut(s) 361, 436
BfuAI ACCTGC 3 cut(s) 472, 1607, 1655
BglII AGATCT 1 cut(s) 962
Bme1390I CCNGG 7 cut(s) 334, 917, 926, 1144, 1306, 1388, 1581
Bme18I GGWCC 5 cut(s) 716, 922, 1081, 1390, 1456
BmeT110I CYCGRG 2 cut(s) 476, 551
BmgBI CACGTC 1 cut(s) 211
BmgT120I GGNCC 9 cut(s) 474, 589, 716, 825, 826, 922, 1081, 1390, 1456
BmiI GGNNCC 7 cut(s) 359, 826, 827, 924, 1082, 1392, 1564
BmrFI CCNGG 7 cut(s) 334, 917, 926, 1144, 1306, 1388, 1581
BmrI ACTGGG 1 cut(s) 1559
BmsI GCATC 4 cut(s) 666, 1039, 1146, 1532
BmuI ACTGGG 1 cut(s) 1559
BpiI GAAGAC 1 cut(s) 1262
BpmI CTGGAG 5 cut(s) 560, 638, 938, 1065, 1088
BpuEI CTTGAG 3 cut(s) 827, 890, 1576
BpuMI CCSGG 3 cut(s) 926, 1144, 1306
BsaHI GRCGYC 3 cut(s) 342, 358, 402
BsaI GGTCTC 1 cut(s) 1075
BsaJI CCNNGG 7 cut(s) 81, 271, 332, 630, 765, 793, 1272
BsaWI WCCGGW 4 cut(s) 515, 700, 818, 865
BsaXI ACNNNNNCTCC 6 cut(s) 433, 463, 847, 877, 1055, 1085
Bsc4I CCNNNNNNNGG 4 cut(s) 579, 582, 635, 1123
Bse118I RCCGGY 4 cut(s) 12, 1168, 1319, 1382
Bse1I ACTGG 3 cut(s) 298, 1048, 1554
Bse3DI GCAATG 1 cut(s) 1320
BseAI TCCGGA 1 cut(s) 515
BseBI CCWGG 4 cut(s) 334, 917, 1388, 1581
BseDI CCNNGG 7 cut(s) 81, 271, 332, 630, 765, 793, 1272
BseGI GGATG 3 cut(s) 1065, 1132, 1717
BseLI CCNNNNNNNGG 4 cut(s) 579, 582, 635, 1123
BseMI GCAATG 1 cut(s) 1320
BseMII CTCAG 2 cut(s) 1170, 1412
BseNI ACTGG 3 cut(s) 298, 1048, 1554
BseRI GAGGAG 6 cut(s) 155, 260, 441, 444, 506, 752
BseSI GKGCMC 1 cut(s) 829
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
Bsh1285I CGRYCG 1 cut(s) 870
BshFI GGCC 9 cut(s) 86, 385, 475, 590, 806, 827, 1319, 1386, 1439
BshNI GGYRCC 2 cut(s) 357, 1562
BsiEI CGRYCG 1 cut(s) 870
BsiHKAI GWGCWC 7 cut(s) 744, 865, 906, 1284, 1327, 1415, 1641
BsiHKCI CYCGRG 2 cut(s) 476, 551
BslFI GGGAC 2 cut(s) 569, 636
BslI CCNNNNNNNGG 4 cut(s) 579, 582, 635, 1123
BsmAI GTCTC 4 cut(s) 515, 1075, 1211, 1471
BsmBI CGTCTC 1 cut(s) 515
BsmFI GGGAC 2 cut(s) 569, 636
BsnI GGCC 9 cut(s) 86, 385, 475, 590, 806, 827, 1319, 1386, 1439
Bso31I GGTCTC 1 cut(s) 1075
BsoBI CYCGRG 2 cut(s) 476, 551
Bsp120I GGGCCC 1 cut(s) 825
Bsp1286I GDGCHC 8 cut(s) 744, 829, 865, 906, 1284, 1327, 1415, 1641
Bsp13I TCCGGA 1 cut(s) 515
Bsp1407I TGTACA 1 cut(s) 1371
Bsp143I GATC 5 cut(s) 186, 228, 962, 990, 1224
BspANI GGCC 9 cut(s) 86, 385, 475, 590, 806, 827, 1319, 1386, 1439
BspCNI CTCAG 2 cut(s) 1169, 1411
BspEI TCCGGA 1 cut(s) 515
BspFNI CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
BspHI TCATGA 1 cut(s) 1023
BspLI GGNNCC 7 cut(s) 359, 826, 827, 924, 1082, 1392, 1564
BspMAI CTGCAG 1 cut(s) 597
BspMI ACCTGC 3 cut(s) 472, 1607, 1655
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 2 cut(s) 357, 1562
BspTNI GGTCTC 1 cut(s) 1075
BsrDI GCAATG 1 cut(s) 1320
BsrFI RCCGGY 4 cut(s) 12, 1168, 1319, 1382
BsrGI TGTACA 1 cut(s) 1371
BsrI ACTGG 3 cut(s) 298, 1048, 1554
BssAI RCCGGY 4 cut(s) 12, 1168, 1319, 1382
BssECI CCNNGG 7 cut(s) 81, 271, 332, 630, 765, 793, 1272
BssMI GATC 5 cut(s) 186, 228, 962, 990, 1224
BssNI GRCGYC 3 cut(s) 342, 358, 402
BssT1I CCWWGG 3 cut(s) 81, 630, 1272
Bst2UI CCWGG 4 cut(s) 334, 917, 1388, 1581
Bst4CI ACNGT 7 cut(s) 102, 151, 666, 1222, 1501, 1530, 1682
Bst6I CTCTTC 3 cut(s) 146, 245, 254
BstACI GRCGYC 3 cut(s) 342, 358, 402
BstAPI GCANNNNNTGC 1 cut(s) 424
BstAUI TGTACA 1 cut(s) 1371
BstC8I GCNNGC 8 cut(s) 14, 176, 784, 1009, 1351, 1537, 1567, 1729
BstDEI CTNAG 2 cut(s) 1156, 1398
BstEII GGTNACC 1 cut(s) 1471
BstF5I GGATG 3 cut(s) 1065, 1132, 1717
BstFNI CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
BstH2I RGCGCY 2 cut(s) 361, 436
BstHHI GCGC 9 cut(s) 38, 97, 180, 320, 355, 360, 435, 1001, 1367
BstKTI GATC 5 cut(s) 189, 231, 965, 993, 1227
BstMAI GTCTC 4 cut(s) 515, 1075, 1211, 1471
BstMBI GATC 5 cut(s) 186, 228, 962, 990, 1224
BstMCI CGRYCG 1 cut(s) 870
BstNI CCWGG 4 cut(s) 334, 917, 1388, 1581
BstNSI RCATGY 3 cut(s) 1038, 1291, 1466
BstPI GGTNACC 1 cut(s) 1471
BstSCI CCNGG 7 cut(s) 332, 915, 924, 1142, 1304, 1386, 1579
BstSFI CTRYAG 1 cut(s) 593
BstSLI GKGCMC 1 cut(s) 829
BstUI CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
BstV2I GAAGAC 1 cut(s) 1262
BstX2I RGATCY 2 cut(s) 186, 962
BstXI CCANNNNNNTGG 1 cut(s) 1492
BstYI RGATCY 2 cut(s) 186, 962
BsuRI GGCC 9 cut(s) 86, 385, 475, 590, 806, 827, 1319, 1386, 1439
BtgZI GCGATG 1 cut(s) 1067
BtrI CACGTC 1 cut(s) 211
BtsCI GGATG 3 cut(s) 1065, 1132, 1717
BtsI GCAGTG 2 cut(s) 1374, 1417
BtsIMutI CAGTG 4 cut(s) 671, 1041, 1374, 1417
BveI ACCTGC 3 cut(s) 472, 1607, 1655
Cac8I GCNNGC 8 cut(s) 14, 176, 784, 1009, 1351, 1537, 1567, 1729
CaiI CAGNNNCTG 1 cut(s) 1622
CciI TCATGA 1 cut(s) 1023
CfoI GCGC 9 cut(s) 38, 97, 180, 320, 355, 360, 435, 1001, 1367
Cfr10I RCCGGY 4 cut(s) 12, 1168, 1319, 1382
Cfr13I GGNCC 9 cut(s) 474, 589, 716, 825, 826, 922, 1081, 1390, 1456
CseI GACGC 3 cut(s) 101, 532, 823
Csp6I GTAC 4 cut(s) 112, 470, 1250, 1372
CspCI CAANNNNNGTGG 2 cut(s) 1594, 1629
CviQI GTAC 4 cut(s) 112, 470, 1250, 1372
DdeI CTNAG 2 cut(s) 1156, 1398
DinI GGCGCC 1 cut(s) 359
DpnI GATC 5 cut(s) 188, 230, 964, 992, 1226
DpnII GATC 5 cut(s) 186, 228, 962, 990, 1224
DrdI GACNNNNNNGTC 1 cut(s) 1463
DseDI GACNNNNNNGTC 1 cut(s) 1463
EaeI YGGCCR 3 cut(s) 383, 1317, 1384
Eam1104I CTCTTC 3 cut(s) 146, 245, 254
EarI CTCTTC 3 cut(s) 146, 245, 254
EciI GGCGGA 1 cut(s) 874
Ecl136II GAGCTC 6 cut(s) 742, 863, 904, 1282, 1413, 1639
Eco130I CCWWGG 3 cut(s) 81, 630, 1272
Eco147I AGGCCT 1 cut(s) 86
Eco24I GRGCYC 7 cut(s) 744, 829, 865, 906, 1284, 1415, 1641
Eco31I GGTCTC 1 cut(s) 1075
Eco47I GGWCC 5 cut(s) 716, 922, 1081, 1390, 1456
Eco47III AGCGCT 1 cut(s) 434
Eco53kI GAGCTC 6 cut(s) 742, 863, 904, 1282, 1413, 1639
Eco57I CTGAAG 3 cut(s) 874, 968, 1274
Eco88I CYCGRG 2 cut(s) 476, 551
Eco91I GGTNACC 1 cut(s) 1471
EcoICRI GAGCTC 6 cut(s) 742, 863, 904, 1282, 1413, 1639
EcoO109I RGGNCCY 5 cut(s) 589, 825, 922, 1390, 1456
EcoO65I GGTNACC 1 cut(s) 1471
EcoRII CCWGG 4 cut(s) 332, 915, 1386, 1579
EcoT14I CCWWGG 3 cut(s) 81, 630, 1272
EcoT38I GRGCYC 7 cut(s) 744, 829, 865, 906, 1284, 1415, 1641
EgeI GGCGCC 1 cut(s) 359
EheI GGCGCC 1 cut(s) 359
ErhI CCWWGG 3 cut(s) 81, 630, 1272
Esp3I CGTCTC 1 cut(s) 515
FaqI GGGAC 2 cut(s) 569, 636
FauI CCCGC 4 cut(s) 41, 323, 576, 1325
FbaI TGATCA 1 cut(s) 1224
FokI GGATG 3 cut(s) 1072, 1139, 1724
FriOI GRGCYC 7 cut(s) 744, 829, 865, 906, 1284, 1415, 1641
FspBI CTAG 6 cut(s) 966, 1520, 1601, 1628, 1673, 1704
GlaI GCGC 9 cut(s) 37, 96, 179, 319, 354, 359, 434, 1000, 1366
GsuI CTGGAG 5 cut(s) 560, 638, 938, 1065, 1088
HaeII RGCGCY 2 cut(s) 361, 436
HaeIII GGCC 9 cut(s) 86, 385, 475, 590, 806, 827, 1319, 1386, 1439
HgaI GACGC 3 cut(s) 101, 532, 823
HhaI GCGC 9 cut(s) 38, 97, 180, 320, 355, 360, 435, 1001, 1367
Hin1I GRCGYC 3 cut(s) 342, 358, 402
Hin6I GCGC 9 cut(s) 36, 95, 178, 318, 353, 358, 433, 999, 1365
HinP1I GCGC 9 cut(s) 36, 95, 178, 318, 353, 358, 433, 999, 1365
HincII GTYRAC 1 cut(s) 1678
HindII GTYRAC 1 cut(s) 1678
HindIII AAGCTT 1 cut(s) 980
HpaI GTTAAC 1 cut(s) 1678
HphI GGTGA 5 cut(s) 68, 139, 1189, 1252, 1465
Hpy166II GTNNAC 4 cut(s) 487, 1032, 1372, 1678
Hpy188I TCNGA 6 cut(s) 91, 226, 662, 893, 1159, 1401
Hpy188III TCNNGA 6 cut(s) 516, 539, 871, 986, 1024, 1105
Hpy8I GTNNAC 4 cut(s) 487, 1032, 1372, 1678
HpyAV CCTTC 9 cut(s) 49, 313, 468, 594, 629, 898, 1184, 1240, 1491
HpyCH4III ACNGT 7 cut(s) 102, 151, 666, 1222, 1501, 1530, 1682
HpyCH4IV ACGT 4 cut(s) 6, 210, 342, 402
HpyF3I CTNAG 2 cut(s) 1156, 1398
HpySE526I ACGT 4 cut(s) 6, 210, 342, 402
Hsp92I GRCGYC 3 cut(s) 342, 358, 402
HspAI GCGC 9 cut(s) 36, 95, 178, 318, 353, 358, 433, 999, 1365
KasI GGCGCC 1 cut(s) 357
Kpn2I TCCGGA 1 cut(s) 515
KroI GCCGGC 1 cut(s) 12
KroNI GCCGGC 1 cut(s) 14
Ksp22I TGATCA 1 cut(s) 1224
KspAI GTTAAC 1 cut(s) 1678
Kzo9I GATC 5 cut(s) 186, 228, 962, 990, 1224
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 4 cut(s) 325, 739, 868, 1279
LweI GCATC 4 cut(s) 666, 1039, 1146, 1532
MaeI CTAG 6 cut(s) 966, 1520, 1601, 1628, 1673, 1704
MaeII ACGT 4 cut(s) 6, 210, 342, 402
MaeIII GTNAC 4 cut(s) 214, 1109, 1471, 1682
MalI GATC 5 cut(s) 188, 230, 964, 992, 1226
MboI GATC 5 cut(s) 186, 228, 962, 990, 1224
MflI RGATCY 2 cut(s) 186, 962
MhlI GDGCHC 8 cut(s) 744, 829, 865, 906, 1284, 1327, 1415, 1641
MluCI AATT 4 cut(s) 498, 502, 1147, 1180
Mly113I GGCGCC 1 cut(s) 358
MlyI GAGTC 6 cut(s) 551, 616, 618, 644, 717, 1568
MmeI TCCRAC 3 cut(s) 114, 1074, 1483
MreI CGCCGGCG 1 cut(s) 12
MroI TCCGGA 1 cut(s) 515
MroNI GCCGGC 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 1019
MseI TTAA 4 cut(s) 501, 1293, 1557, 1677
MslI CAYNNNNRTG 2 cut(s) 1427, 1490
MspA1I CMGCKG 3 cut(s) 109, 174, 1175
MspR9I CCNGG 7 cut(s) 334, 917, 926, 1144, 1306, 1388, 1581
MteI GCGCNGCGC 1 cut(s) 356
MvaI CCWGG 4 cut(s) 334, 917, 1388, 1581
MvnI CGCG 6 cut(s) 36, 95, 180, 318, 355, 1001
NaeI GCCGGC 1 cut(s) 14
NarI GGCGCC 1 cut(s) 358
NciI CCSGG 3 cut(s) 926, 1144, 1306
NdeII GATC 5 cut(s) 186, 228, 962, 990, 1224
NgoMIV GCCGGC 1 cut(s) 12
NlaIV GGNNCC 7 cut(s) 359, 826, 827, 924, 1082, 1392, 1564
NmeAIII GCCGAG 2 cut(s) 252, 925
NmuCI GTSAC 4 cut(s) 214, 1109, 1471, 1682
NspI RCATGY 3 cut(s) 1038, 1291, 1466
PagI TCATGA 1 cut(s) 1023
PaqCI CACCTGC 1 cut(s) 472
PceI AGGCCT 1 cut(s) 86
PciI ACATGT 1 cut(s) 1462
PciSI GCTCTTC 1 cut(s) 146
PdiI GCCGGC 1 cut(s) 14
PdmI GAANNNNTTC 1 cut(s) 1019
PfeI GAWTC 4 cut(s) 547, 697, 938, 1015
PflFI GACNNNGTC 3 cut(s) 293, 344, 526
PfoI TCCNGGA 2 cut(s) 915, 1142
PleI GAGTC 6 cut(s) 550, 615, 618, 644, 716, 1568
PluTI GGCGCC 1 cut(s) 361
PpsI GAGTC 6 cut(s) 550, 615, 618, 644, 716, 1568
PpuMI RGGWCCY 3 cut(s) 922, 1390, 1456
PscI ACATGT 1 cut(s) 1462
PshBI ATTAAT 1 cut(s) 501
Psp124BI GAGCTC 6 cut(s) 744, 865, 906, 1284, 1415, 1641
Psp5II RGGWCCY 3 cut(s) 922, 1390, 1456
Psp6I CCWGG 4 cut(s) 332, 915, 1386, 1579
PspEI GGTNACC 1 cut(s) 1471
PspGI CCWGG 4 cut(s) 332, 915, 1386, 1579
PspN4I GGNNCC 7 cut(s) 359, 826, 827, 924, 1082, 1392, 1564
PspOMI GGGCCC 1 cut(s) 825
PspPI GGNCC 9 cut(s) 474, 589, 716, 825, 826, 922, 1081, 1390, 1456
PspPPI RGGWCCY 3 cut(s) 922, 1390, 1456
PstI CTGCAG 1 cut(s) 597
PstNI CAGNNNCTG 1 cut(s) 1622
PsuI RGATCY 2 cut(s) 186, 962
PsyI GACNNNGTC 3 cut(s) 293, 344, 526
RsaI GTAC 4 cut(s) 113, 471, 1251, 1373
RsaNI GTAC 4 cut(s) 112, 470, 1250, 1372
RseI CAYNNNNRTG 2 cut(s) 1427, 1490
SacI GAGCTC 6 cut(s) 744, 865, 906, 1284, 1415, 1641
SapI GCTCTTC 1 cut(s) 146
SaqAI TTAA 4 cut(s) 501, 1293, 1557, 1677
Sau3AI GATC 5 cut(s) 186, 228, 962, 990, 1224
Sau96I GGNCC 9 cut(s) 474, 589, 716, 825, 826, 922, 1081, 1390, 1456
SchI GAGTC 6 cut(s) 551, 616, 618, 644, 717, 1568
ScrFI CCNGG 7 cut(s) 334, 917, 926, 1144, 1306, 1388, 1581
SduI GDGCHC 8 cut(s) 744, 829, 865, 906, 1284, 1327, 1415, 1641
SfaNI GCATC 4 cut(s) 666, 1039, 1146, 1532
SfcI CTRYAG 1 cut(s) 593
SfoI GGCGCC 1 cut(s) 359
SgrAI CRCCGGYG 1 cut(s) 12
SinI GGWCC 5 cut(s) 716, 922, 1081, 1390, 1456
SmiMI CAYNNNNRTG 2 cut(s) 1427, 1490
SmlI CTYRAG 3 cut(s) 842, 905, 1591
SmoI CTYRAG 3 cut(s) 842, 905, 1591
Sse9I AATT 4 cut(s) 498, 502, 1147, 1180
SseBI AGGCCT 1 cut(s) 86
SspDI GGCGCC 1 cut(s) 357
SspMI CTAG 6 cut(s) 966, 1520, 1601, 1628, 1673, 1704
SstI GAGCTC 6 cut(s) 744, 865, 906, 1284, 1415, 1641
StuI AGGCCT 1 cut(s) 86
StyD4I CCNGG 7 cut(s) 332, 915, 924, 1142, 1304, 1386, 1579
StyI CCWWGG 3 cut(s) 81, 630, 1272
TaaI ACNGT 7 cut(s) 102, 151, 666, 1222, 1501, 1530, 1682
TaiI ACGT 4 cut(s) 9, 213, 345, 405
TaqI TCGA 4 cut(s) 545, 642, 729, 936
TaqII GACCGA 1 cut(s) 1459
TasI AATT 4 cut(s) 498, 502, 1147, 1180
TatI WGTACW 2 cut(s) 111, 1371
TauI GCSGC 8 cut(s) 48, 109, 236, 358, 385, 430, 572, 575
TfiI GAWTC 4 cut(s) 547, 697, 938, 1015
Tru1I TTAA 4 cut(s) 501, 1293, 1557, 1677
Tru9I TTAA 4 cut(s) 501, 1293, 1557, 1677
TscAI CASTG 4 cut(s) 671, 1048, 1374, 1424
TseFI GTSAC 4 cut(s) 214, 1109, 1471, 1682
Tsp45I GTSAC 4 cut(s) 214, 1109, 1471, 1682
TspDTI ATGAA 4 cut(s) 71, 1012, 1076, 1245
TspGWI ACGGA 2 cut(s) 247, 496
TspRI CASTG 4 cut(s) 671, 1048, 1374, 1424
Tth111I GACNNNGTC 3 cut(s) 293, 344, 526
VpaK11BI GGWCC 5 cut(s) 716, 922, 1081, 1390, 1456
VspI ATTAAT 1 cut(s) 501
XapI RAATTY 1 cut(s) 1147
XceI RCATGY 3 cut(s) 1038, 1291, 1466
XmnI GAANNNNTTC 1 cut(s) 1019
XspI CTAG 6 cut(s) 966, 1520, 1601, 1628, 1673, 1704
ZraI GACGTC 2 cut(s) 343, 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.