Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002062

Physical Location & Seq

Genomic Coordinates Reverse (-)

12249562 .. 12262613

Gene Structure 13052 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G012010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGGTGAATGGAGGAAAAGATCATTCTGTCATTATGATCGAAGCAGGGAAAACAGAGTGGCAACTTCACCCATCAGCTGGAAACGAGGCTTGTTGCATCTTCAGAGTTCCCCAATGCCTTGTGAAAATACACCCCAAGACCTACCAGCCTCACGTAGTCTCCATCGGCCCTTACCACTATGGAAAACCACATCTGCACATGATGCAGGAGCACAAACAGAGATATCTTGGCGATCTGCTTGCTCGAACAGCATCAACTGGCCTGAAACTTGATGAGTACCTGCAGGCTGTTGAATCAAGGGAAAATGATATAAGAGATTGCTATTCGGAGAACATCAAGTTTGGCAGCGGCGATCTAGTTGAGATAATGGTGCTAGACGATCTCTTCATTATCGAACTCTTCTGTAAAGAATTCAAAGGACTAGTGAAGCGTAATCTCATACGAGATCTCCTCCGGTTGGAGAACCAAATTCCTTTCTTTGTTCTTCAAATCTTTCAATTGTCTCTTTCCAAGCTCGCTTTGCAATTCATCAGTTACGCAGTAGAAAGACCGGGAAAAGTCTTAAACCAGCAATTTGAAGCCAAAAAATTGGTTGATTTAGTGCGATTGAGTTTTGCACCTCAACCTCTTGATCATCCATCTCATCCAACTCCAGACAAGAAGCTGAAAAAACACTCCTTCCTTACTCCTATCAATCCCACCTGCAAGAACATCTCTGAAAGGCATCAAGGAAGGAGCTCCTTGGACATCAAATTTCGCAATGGAGTGCTCAAAATTCCAAACATATTACTAGATGATCTTCGTGCCGATTTATTTCTAAATTTTGTTGCATTTGAACAGCACCGATACTTCCCTTGCCCATCAAGGCACATAACCAGTTATGCAGCATTCATGAGTTGCCTCATCCGCACACCTGAGGACGCAACATTTCTCCGCAATAAAGACATTATTAACAACTATCTTGGAACCGACGAGGAAGTTGCCAATTTCTTTAGAACCTTAGGTAAAGATGTGACTTTTGATATTGATGAGAGCTATCTATGCAAGTTGTTCATAGATGTGAACAAGTACCAGAGAAATGTTTTGCACGTGACATGGGGAGAGTTCAAATTCAAGTACTTTGATTCCCCCTTGTCTTTCGTATCTGCTTTAGCTGCTGTCATAGTTCTACTGCTTACCGTACTTCAGACCTTCTATACTGTTTATGAGTATTCCCATCCACAACAGTCTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF247

Protein Analysis

411

Amino Acids

47.42

Weight (kDa)

8.0

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	33 - 392	6.7e-95	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002062)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44695 AT3G44700 AT3G44700 AT3G44710 AT5G22540 AT5G22550 AT5G22550 AT5G22560
fragaria_vesca	FvH4_1g12920 FvH4_1g13901 FvH4_1g13920
malus_domestica	MD02G1152400.v1.1 MD07G1114700.v1.1 MD07G1115000.v1.1 MD10G1144400.v1.1 MD10G1146500.v1.1
prunus_persica	Prupe.7G149800_v2.0.a1 Prupe.7G150000_v2.0.a1 Prupe.7G150500_v2.0.a1
pyrus_communis	pycom07g10000 pycom10g12420
rosa_chinensis	RchiOBHm_Chr2g0103321 RchiOBHm_Chr7g0226251
rosa_laevigata	RLG00000017223
rosa_multiflora	Rmu_sc0002435.1_g000011 Rmu_sc0006727.1_g000002 Rmu_sc0006743.1_g000002 Rmu_sc0006743.1_g000003 Rmu_sc0010053.1_g000005 Rmu_sc0025224.1_g000002
rosa_roxburghii	Rroxscaffold_2G00139740
rosa_rugosa	Rorug02G0105700 Rorug02G0105800 Rorug02G0105800 Rorug02G0113600 Rorug02G0113800 Rorug07G0236000
rosa_samantha	Rh2BG169200 Rh2CG169100 Rh2DG168000 Rh3BG095300
rosa_wichuraiana	Rw0G019400 Rw2G012010 Rw2G012730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	710
Acc36I	ACCTGC	2 cut(s)	288, 710
AccB7I	CCANNNNNTGG	1 cut(s)	77
AciI	CCGC	3 cut(s)	348, 907, 934
AcsI	RAATTY	6 cut(s)	410, 468, 752, 774, 820, 1109
AcuI	CTGAAG	2 cut(s)	85, 1169
AcvI	CACGTG	1 cut(s)	1090
AfaI	GTAC	4 cut(s)	278, 1070, 1118, 1182
AfiI	CCNNNNNNNGG	2 cut(s)	77, 457
AgsI	TTSAA	8 cut(s)	293, 415, 488, 497, 578, 836, 1108, 1114
AhlI	ACTAGT	1 cut(s)	421
AluBI	AGCT	6 cut(s)	77, 514, 664, 738, 1035, 1154
AluI	AGCT	6 cut(s)	77, 514, 664, 738, 1035, 1154
Alw21I	GWGCWC	3 cut(s)	213, 740, 771
Alw26I	GTCTC	2 cut(s)	163, 507
AoxI	GGCC	2 cut(s)	166, 259
ApeKI	GCWGC	3 cut(s)	345, 884, 1154
ApoI	RAATTY	6 cut(s)	410, 468, 752, 774, 820, 1109
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	1 cut(s)	552
AsuHPI	GGTGA	2 cut(s)	16, 59
AxyI	CCTNAGG	2 cut(s)	915, 1000
BanII	GRGCYC	1 cut(s)	740
BbrPI	CACGTG	1 cut(s)	1090
Bbv12I	GWGCWC	3 cut(s)	213, 740, 771
BbvI	GCAGC	3 cut(s)	357, 896, 1141
BccI	CCATC	5 cut(s)	79, 170, 646, 868, 1224
BcgI	CGANNNNNNTGC	4 cut(s)	221, 255, 962, 996
BclI	TGATCA	1 cut(s)	631
BcnI	CCSGG	1 cut(s)	552
BcoDI	GTCTC	2 cut(s)	163, 507
BcuI	ACTAGT	1 cut(s)	421
BfaI	CTAG	4 cut(s)	356, 374, 422, 791
BfmI	CTRYAG	1 cut(s)	281
BfuAI	ACCTGC	2 cut(s)	288, 710
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	4 cut(s)	346, 349, 885, 1155
BlsI	GCNGC	4 cut(s)	347, 350, 886, 1156
BmcAI	AGTACT	1 cut(s)	1118
Bme1390I	CCNGG	1 cut(s)	552
BmgT120I	GGNCC	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	967
BmrFI	CCNGG	1 cut(s)	552
BmsI	GCATC	4 cut(s)	105, 192, 260, 733
BplI	GAGNNNNNCTC	2 cut(s)	435, 467
BpmI	CTGGAG	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	552
BsaAI	YACGTR	2 cut(s)	154, 1090
BsaJI	CCNNGG	1 cut(s)	741
BsaWI	WCCGGW	1 cut(s)	453
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 432, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 457
Bse1I	ACTGG	2 cut(s)	262, 876
Bse21I	CCTNAGG	2 cut(s)	915, 1000
Bse3DI	GCAATG	1 cut(s)	766
BseDI	CCNNGG	1 cut(s)	741
BseGI	GGATG	4 cut(s)	634, 643, 903, 1216
BseLI	CCNNNNNNNGG	2 cut(s)	77, 457
BseMI	GCAATG	1 cut(s)	766
BseMII	CTCAG	1 cut(s)	906
BseNI	ACTGG	2 cut(s)	262, 876
BseRI	GAGGAG	1 cut(s)	440
BseXI	GCAGC	3 cut(s)	357, 896, 1141
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	2 cut(s)	168, 261
BsiHKAI	GWGCWC	3 cut(s)	213, 740, 771
BsiSI	CCGG	2 cut(s)	454, 551
BslI	CCNNNNNNNGG	2 cut(s)	77, 457
BsmAI	GTCTC	2 cut(s)	163, 507
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	2 cut(s)	168, 261
Bsp1286I	GDGCHC	3 cut(s)	213, 740, 771
Bsp143I	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
BspACI	CCGC	3 cut(s)	348, 907, 934
BspANI	GGCC	2 cut(s)	168, 261
BspCNI	CTCAG	1 cut(s)	907
BspHI	TCATGA	1 cut(s)	891
BspLI	GGNNCC	1 cut(s)	967
BspMAI	CTGCAG	1 cut(s)	285
BspMI	ACCTGC	2 cut(s)	288, 710
BsrDI	GCAATG	1 cut(s)	766
BsrI	ACTGG	2 cut(s)	262, 876
BssECI	CCNNGG	1 cut(s)	741
BssMI	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
BssT1I	CCWWGG	1 cut(s)	741
Bst4CI	ACNGT	3 cut(s)	1180, 1201, 1227
Bst6I	CTCTTC	2 cut(s)	389, 404
BstAPI	GCANNNNNTGC	1 cut(s)	202
BstBAI	YACGTR	2 cut(s)	154, 1090
BstC8I	GCNNGC	3 cut(s)	240, 285, 516
BstDEI	CTNAG	2 cut(s)	915, 1000
BstF5I	GGATG	4 cut(s)	634, 643, 903, 1216
BstKTI	GATC	8 cut(s)	22, 39, 235, 355, 382, 448, 634, 799
BstMAI	GTCTC	2 cut(s)	163, 507
BstMBI	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 248, 520, 906, 1041, 1154
BstSCI	CCNGG	1 cut(s)	550
BstSFI	CTRYAG	1 cut(s)	281
BstV1I	GCAGC	3 cut(s)	357, 896, 1141
BstX2I	RGATCY	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	1 cut(s)	445
Bsu36I	CCTNAGG	2 cut(s)	915, 1000
BsuRI	GGCC	2 cut(s)	168, 261
BtsCI	GGATG	4 cut(s)	634, 643, 903, 1216
BveI	ACCTGC	2 cut(s)	288, 710
Cac8I	GCNNGC	3 cut(s)	240, 285, 516
CciI	TCATGA	1 cut(s)	891
Cfr13I	GGNCC	1 cut(s)	167
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	4 cut(s)	277, 1069, 1117, 1181
CviAII	CATG	3 cut(s)	199, 892, 1095
CviQI	GTAC	4 cut(s)	277, 1069, 1117, 1181
DdeI	CTNAG	2 cut(s)	915, 1000
DpnI	GATC	8 cut(s)	21, 38, 234, 354, 381, 447, 633, 798
DpnII	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
Eam1104I	CTCTTC	2 cut(s)	389, 404
EarI	CTCTTC	2 cut(s)	389, 404
Ecl136II	GAGCTC	1 cut(s)	738
Eco130I	CCWWGG	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	740
Eco32I	GATATC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	738
Eco57I	CTGAAG	2 cut(s)	85, 1169
Eco72I	CACGTG	1 cut(s)	1090
Eco81I	CCTNAGG	2 cut(s)	915, 1000
EcoICRI	GAGCTC	1 cut(s)	738
EcoRI	GAATTC	1 cut(s)	410
EcoRV	GATATC	1 cut(s)	224
EcoT14I	CCWWGG	1 cut(s)	741
EcoT38I	GRGCYC	1 cut(s)	740
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	3 cut(s)	202, 895, 1098
FatI	CATG	3 cut(s)	198, 891, 1094
FbaI	TGATCA	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	346, 349, 885, 1155
FokI	GGATG	4 cut(s)	621, 630, 890, 1203
FriOI	GRGCYC	1 cut(s)	740
Fsp4HI	GCNGC	4 cut(s)	346, 349, 885, 1155
FspBI	CTAG	4 cut(s)	356, 374, 422, 791
GluI	GCNGC	4 cut(s)	346, 349, 885, 1155
GsuI	CTGGAG	1 cut(s)	636
HaeIII	GGCC	2 cut(s)	168, 261
HapII	CCGG	2 cut(s)	454, 551
HgaI	GACGC	1 cut(s)	929
Hin1II	CATG	3 cut(s)	202, 895, 1098
HinfI	GANTC	2 cut(s)	293, 1124
HpaII	CCGG	2 cut(s)	454, 551
HphI	GGTGA	2 cut(s)	16, 59
Hpy166II	GTNNAC	1 cut(s)	1063
Hpy188I	TCNGA	4 cut(s)	104, 328, 718, 1188
Hpy188III	TCNNGA	3 cut(s)	629, 653, 892
Hpy8I	GTNNAC	1 cut(s)	1063
Hpy99I	CGWCG	1 cut(s)	974
HpyAV	CCTTC	3 cut(s)	688, 726, 1201
HpyCH4III	ACNGT	3 cut(s)	1180, 1201, 1227
HpyCH4IV	ACGT	2 cut(s)	153, 1089
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 248, 520, 906, 1041, 1154
HpyF3I	CTNAG	2 cut(s)	915, 1000
HpySE526I	ACGT	2 cut(s)	153, 1089
Hsp92II	CATG	3 cut(s)	202, 895, 1098
Ksp22I	TGATCA	1 cut(s)	631
Kzo9I	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
LmnI	GCTCC	3 cut(s)	208, 735, 743
Lsp1109I	GCAGC	3 cut(s)	357, 896, 1141
LweI	GCATC	4 cut(s)	105, 192, 260, 733
MaeI	CTAG	4 cut(s)	356, 374, 422, 791
MaeII	ACGT	2 cut(s)	153, 1089
MaeIII	GTNAC	3 cut(s)	533, 1012, 1090
MalI	GATC	8 cut(s)	21, 38, 234, 354, 381, 447, 633, 798
MboI	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
MboII	GAAGA	5 cut(s)	91, 376, 391, 476, 791
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	1 cut(s)	445
MhlI	GDGCHC	3 cut(s)	213, 740, 771
MmeI	TCCRAC	2 cut(s)	438, 671
MnlI	CCTC	9 cut(s)	5, 79, 159, 461, 630, 636, 910, 911, 967
MseI	TTAA	2 cut(s)	563, 951
MslI	CAYNNNNRTG	1 cut(s)	1058
MspA1I	CMGCKG	2 cut(s)	77, 348
MspI	CCGG	2 cut(s)	454, 551
MspR9I	CCNGG	1 cut(s)	552
MunI	CAATTG	1 cut(s)	497
Mva1269I	GAATGC	1 cut(s)	887
MwoI	GCNNNNNNNGC	6 cut(s)	202, 248, 520, 906, 1041, 1154
NciI	CCSGG	1 cut(s)	552
NdeII	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
NlaIII	CATG	3 cut(s)	202, 895, 1098
NlaIV	GGNNCC	1 cut(s)	967
NmuCI	GTSAC	2 cut(s)	1012, 1090
PagI	TCATGA	1 cut(s)	891
PaqCI	CACCTGC	1 cut(s)	710
PctI	GAATGC	1 cut(s)	887
PfeI	GAWTC	2 cut(s)	293, 1124
PflMI	CCANNNNNTGG	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	347, 350, 886, 1156
PmaCI	CACGTG	1 cut(s)	1090
PmlI	CACGTG	1 cut(s)	1090
Ppu21I	YACGTR	2 cut(s)	154, 1090
Psp124BI	GAGCTC	1 cut(s)	740
PspCI	CACGTG	1 cut(s)	1090
PspN4I	GGNNCC	1 cut(s)	967
PspPI	GGNCC	1 cut(s)	167
PstI	CTGCAG	1 cut(s)	285
PsuI	RGATCY	1 cut(s)	445
PvuII	CAGCTG	1 cut(s)	77
RsaI	GTAC	4 cut(s)	278, 1070, 1118, 1182
RsaNI	GTAC	4 cut(s)	277, 1069, 1117, 1181
RseI	CAYNNNNRTG	1 cut(s)	1058
SacI	GAGCTC	1 cut(s)	740
SaqAI	TTAA	2 cut(s)	563, 951
SatI	GCNGC	4 cut(s)	346, 349, 885, 1155
Sau3AI	GATC	8 cut(s)	19, 36, 232, 352, 379, 445, 631, 796
Sau96I	GGNCC	1 cut(s)	167
SbfI	CCTGCAGG	1 cut(s)	285
ScaI	AGTACT	1 cut(s)	1118
ScrFI	CCNGG	1 cut(s)	552
SdaI	CCTGCAGG	1 cut(s)	285
SduI	GDGCHC	3 cut(s)	213, 740, 771
SfaNI	GCATC	4 cut(s)	105, 192, 260, 733
SfcI	CTRYAG	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	1058
SpeI	ACTAGT	1 cut(s)	421
Sse8387I	CCTGCAGG	1 cut(s)	285
SsiI	CCGC	3 cut(s)	348, 907, 934
SspMI	CTAG	4 cut(s)	356, 374, 422, 791
SstI	GAGCTC	1 cut(s)	740
StyD4I	CCNGG	1 cut(s)	550
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	3 cut(s)	1180, 1201, 1227
TaiI	ACGT	2 cut(s)	156, 1092
TaqI	TCGA	3 cut(s)	39, 244, 393
TatI	WGTACW	1 cut(s)	1116
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	293, 1124
Tru1I	TTAA	2 cut(s)	563, 951
Tru9I	TTAA	2 cut(s)	563, 951
TseFI	GTSAC	2 cut(s)	1012, 1090
TseI	GCWGC	3 cut(s)	345, 884, 1154
Tsp45I	GTSAC	2 cut(s)	1012, 1090
TspDTI	ATGAA	4 cut(s)	376, 517, 880, 1042
Van91I	CCANNNNNTGG	1 cut(s)	77
XapI	RAATTY	6 cut(s)	410, 468, 752, 774, 820, 1109
XspI	CTAG	4 cut(s)	356, 374, 422, 791
ZrmI	AGTACT	1 cut(s)	1118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.