Rorug02G0105800

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001173
Physical Location & Seq
Forward (+)
9036097 .. 9039964
3868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0105800.1

Sequence Viewer

Length: 843 bp
ATGGCTTACCCACAACAACAACAACAACAGAATCATCAACAACAACAGCTGTTCAATTCGCCGTTCGGGGACACGACGTTGACGAAGGTCTTCGTCGGAGGGCTGGCATGGGAGACCCAGAGCGAGACGCTCCGCCGCCACTTCGAGCAGTACGGCGATATACTCGAGGCTGTCGTCATCACCGATAAGAACACCGCCCGATCCAAAGGCTATGGCTTTGTCACATTTCGTGATCCCGACTCTGCAAGAAGGGCCTGTGCGGACCCCAATCCTGTTATTGATGGCCGCAGGGCTAACTGTAATCTGGCTTCTTTAGGCCGCCCTCGCCCATCATTCCATTTCCCCGGGCAACTGAGATCACCAGCGCCAATCCTGGGTCGTGTGCAAGCTCCAAGAGCTGCTTACGTGGGGAGTCCTGGTTATCACCACCCTCTTTCTCATGCTTATCAGCCCGGGTTTGTTTACCCTTCTTATGGGTACACAGCATATGGACCTGAATATGTCTACCCACAGGGTGTCTATAGTCCGTACATGAATCAGCAATACCTTCAGATGTATGGTGTACCGGGGACAGTCAACCCTGGTGTATATCCTTACGGACAAGCGGGTCATTCTCTTTCCGGCAATCCTGCGTATACGGCGGTACAAAGCTATGGAATTCCAGGCCATCATATAATGCAATTCACTGGGTCCAATGTCAGTGGGGCATCACCAGTTCCCCTTCCCACAATTCAAACACCATATCCTGCAGGTATAGCTGCACCAGCTCCAGGACAGGCACAACTTTTACTTCCTACTAATTCTCCTCAATTCACCAGCAGTTCTGATCAAACTGCAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

280

Amino Acids

30.4

Weight (kDa)

8.76

Isoelectric Point (pI)

58.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 30 - 87 8.8e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 606
Acc36I ACCTGC 1 cut(s) 740
AccI GTMKAC 2 cut(s) 504, 635
AciI CCGC 8 cut(s) 133, 136, 195, 260, 286, 319, 605, 641
AclWI GGATC 2 cut(s) 195, 227
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 533
AdeI CACNNNGTG 1 cut(s) 515
AfaI GTAC 5 cut(s) 152, 479, 530, 564, 645
AfiI CCNNNNNNNGG 3 cut(s) 374, 473, 770
AgsI TTSAA 2 cut(s) 55, 734
AjnI CCWGG 5 cut(s) 372, 415, 580, 661, 769
AluBI AGCT 6 cut(s) 49, 389, 398, 651, 758, 767
AluI AGCT 6 cut(s) 49, 389, 398, 651, 758, 767
Alw26I GTCTC 2 cut(s) 107, 119
AlwI GGATC 2 cut(s) 195, 227
Ama87I CYCGRG 3 cut(s) 164, 344, 452
AoxI GGCC 4 cut(s) 252, 283, 316, 664
ApeKI GCWGC 2 cut(s) 398, 758
ApoI RAATTY 1 cut(s) 657
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 1 cut(s) 367
AspS9I GGNCC 4 cut(s) 252, 262, 491, 690
AsuC2I CCSGG 5 cut(s) 345, 346, 453, 454, 567
AsuHPI GGTGA 5 cut(s) 172, 351, 416, 702, 805
AvaI CYCGRG 3 cut(s) 164, 344, 452
AvaII GGWCC 3 cut(s) 262, 491, 690
BarI GAAGNNNNNNTAC 2 cut(s) 292, 324
BbsI GAAGAC 1 cut(s) 82
BbvI GCAGC 2 cut(s) 385, 745
BccI CCATC 3 cut(s) 275, 337, 675
BceAI ACGGC 3 cut(s) 46, 169, 654
BciT130I CCWGG 5 cut(s) 374, 417, 582, 663, 771
BclI TGATCA 1 cut(s) 826
BcnI CCSGG 5 cut(s) 345, 346, 453, 454, 567
BcoDI GTCTC 2 cut(s) 107, 119
BfmI CTRYAG 3 cut(s) 520, 747, 834
BfoI RGCGCY 1 cut(s) 368
BfuAI ACCTGC 1 cut(s) 740
BisI GCNGC 5 cut(s) 136, 286, 319, 399, 759
BlsI GCNGC 5 cut(s) 137, 287, 320, 400, 760
Bme18I GGWCC 3 cut(s) 262, 491, 690
BmeT110I CYCGRG 3 cut(s) 164, 344, 452
BmgT120I GGNCC 4 cut(s) 252, 262, 491, 690
BmiI GGNNCC 2 cut(s) 264, 691
BmrI ACTGGG 1 cut(s) 696
BmsI GCATC 1 cut(s) 716
BmuI ACTGGG 1 cut(s) 696
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 82
BpmI CTGGAG 1 cut(s) 753
BpuMI CCSGG 5 cut(s) 345, 346, 453, 454, 567
BsaAI YACGTR 1 cut(s) 406
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 6 cut(s) 343, 344, 373, 452, 566, 580
BsaXI ACNNNNNCTCC 4 cut(s) 403, 433, 787, 817
Bsc4I CCNNNNNNNGG 3 cut(s) 374, 473, 770
Bse1I ACTGG 2 cut(s) 691, 713
BseBI CCWGG 5 cut(s) 374, 417, 582, 663, 771
BseDI CCNNGG 6 cut(s) 343, 344, 373, 452, 566, 580
BseLI CCNNNNNNNGG 3 cut(s) 374, 473, 770
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 691, 713
BseRI GAGGAG 1 cut(s) 795
BseXI GCAGC 2 cut(s) 385, 745
BsgI GTGCAG 1 cut(s) 744
BshFI GGCC 4 cut(s) 254, 285, 318, 666
BsiHKCI CYCGRG 3 cut(s) 164, 344, 452
BsiSI CCGG 4 cut(s) 345, 453, 566, 621
BslFI GGGAC 2 cut(s) 83, 583
BslI CCNNNNNNNGG 3 cut(s) 374, 473, 770
BsmAI GTCTC 2 cut(s) 107, 119
BsmBI CGTCTC 1 cut(s) 119
BsmFI GGGAC 2 cut(s) 83, 583
BsnI GGCC 4 cut(s) 254, 285, 318, 666
Bso31I GGTCTC 1 cut(s) 107
BsoBI CYCGRG 3 cut(s) 164, 344, 452
Bsp143I GATC 4 cut(s) 200, 232, 356, 826
BspACI CCGC 8 cut(s) 133, 136, 195, 260, 286, 319, 605, 641
BspANI GGCC 4 cut(s) 254, 285, 318, 666
BspCNI CTCAG 1 cut(s) 345
BspLI GGNNCC 2 cut(s) 264, 691
BspMAI CTGCAG 2 cut(s) 751, 838
BspMI ACCTGC 1 cut(s) 740
BspPI GGATC 2 cut(s) 195, 227
BspTNI GGTCTC 1 cut(s) 107
BsrI ACTGG 2 cut(s) 691, 713
BssECI CCNNGG 6 cut(s) 343, 344, 373, 452, 566, 580
BssMI GATC 4 cut(s) 200, 232, 356, 826
BssNAI GTATAC 1 cut(s) 636
Bst1107I GTATAC 1 cut(s) 636
Bst2UI CCWGG 5 cut(s) 374, 417, 582, 663, 771
Bst4CI ACNGT 2 cut(s) 299, 574
BstBAI YACGTR 1 cut(s) 406
BstC8I GCNNGC 2 cut(s) 105, 387
BstDEI CTNAG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 368
BstHHI GCGC 1 cut(s) 367
BstKTI GATC 4 cut(s) 203, 235, 359, 829
BstMAI GTCTC 2 cut(s) 107, 119
BstMBI GATC 4 cut(s) 200, 232, 356, 826
BstMWI GCNNNNNNNGC 6 cut(s) 251, 324, 395, 638, 755, 764
BstNI CCWGG 5 cut(s) 374, 417, 582, 663, 771
BstPAI GACNNNNGTC 1 cut(s) 86
BstSFI CTRYAG 3 cut(s) 520, 747, 834
BstV1I GCAGC 2 cut(s) 385, 745
BstV2I GAAGAC 1 cut(s) 82
BstZ17I GTATAC 1 cut(s) 636
BsuRI GGCC 4 cut(s) 254, 285, 318, 666
BtsIMutI CAGTG 2 cut(s) 684, 706
BveI ACCTGC 1 cut(s) 740
Cac8I GCNNGC 2 cut(s) 105, 387
CfoI GCGC 1 cut(s) 367
Cfr13I GGNCC 4 cut(s) 252, 262, 491, 690
Cfr9I CCCGGG 2 cut(s) 344, 452
CseI GACGC 1 cut(s) 136
Csp6I GTAC 5 cut(s) 151, 478, 529, 563, 644
CspCI CAANNNNNGTGG 2 cut(s) 682, 717
CviAII CATG 3 cut(s) 108, 440, 532
CviQI GTAC 5 cut(s) 151, 478, 529, 563, 644
DdeI CTNAG 1 cut(s) 353
DpnI GATC 4 cut(s) 202, 234, 358, 828
DpnII GATC 4 cut(s) 200, 232, 356, 826
DraIII CACNNNGTG 1 cut(s) 515
DrdI GACNNNNNNGTC 1 cut(s) 606
DseDI GACNNNNNNGTC 1 cut(s) 606
EaeI YGGCCR 1 cut(s) 283
EciI GGCGGA 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 107
Eco47I GGWCC 3 cut(s) 262, 491, 690
Eco57I CTGAAG 1 cut(s) 533
Eco88I CYCGRG 3 cut(s) 164, 344, 452
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 5 cut(s) 372, 415, 580, 661, 769
Esp3I CGTCTC 1 cut(s) 119
FaeI CATG 3 cut(s) 111, 443, 535
FalI AAGNNNNNCTT 2 cut(s) 385, 417
FaqI GGGAC 2 cut(s) 83, 583
FatI CATG 3 cut(s) 107, 439, 531
FauI CCCGC 1 cut(s) 598
FauNDI CATATG 1 cut(s) 487
FbaI TGATCA 1 cut(s) 826
FblI GTMKAC 2 cut(s) 504, 635
Fnu4HI GCNGC 5 cut(s) 136, 286, 319, 399, 759
Fsp4HI GCNGC 5 cut(s) 136, 286, 319, 399, 759
GlaI GCGC 1 cut(s) 366
GluI GCNGC 5 cut(s) 136, 286, 319, 399, 759
GsuI CTGGAG 1 cut(s) 753
HaeII RGCGCY 1 cut(s) 368
HaeIII GGCC 4 cut(s) 254, 285, 318, 666
HapII CCGG 4 cut(s) 345, 453, 566, 621
HgaI GACGC 1 cut(s) 136
HhaI GCGC 1 cut(s) 367
Hin1II CATG 3 cut(s) 111, 443, 535
Hin6I GCGC 1 cut(s) 365
HinP1I GCGC 1 cut(s) 365
HincII GTYRAC 2 cut(s) 81, 577
HindII GTYRAC 2 cut(s) 81, 577
HinfI GANTC 4 cut(s) 31, 239, 412, 535
HpaII CCGG 4 cut(s) 345, 453, 566, 621
HphI GGTGA 5 cut(s) 172, 351, 416, 702, 805
Hpy166II GTNNAC 7 cut(s) 81, 463, 480, 505, 563, 577, 636
Hpy188I TCNGA 3 cut(s) 98, 552, 826
Hpy188III TCNNGA 2 cut(s) 230, 236
Hpy8I GTNNAC 7 cut(s) 81, 463, 480, 505, 563, 577, 636
Hpy99I CGWCG 2 cut(s) 79, 98
HpyAV CCTTC 5 cut(s) 79, 243, 477, 557, 731
HpyCH4III ACNGT 2 cut(s) 299, 574
HpyCH4IV ACGT 2 cut(s) 77, 405
HpyCH4V TGCA 6 cut(s) 245, 385, 679, 749, 761, 836
HpyF10VI GCNNNNNNNGC 6 cut(s) 251, 324, 395, 638, 755, 764
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 77, 405
Hsp92II CATG 3 cut(s) 111, 443, 535
HspAI GCGC 1 cut(s) 365
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 200, 232, 356, 826
LmnI GCTCC 3 cut(s) 135, 394, 772
Lsp1109I GCAGC 2 cut(s) 385, 745
LweI GCATC 1 cut(s) 716
MaeII ACGT 2 cut(s) 77, 405
MaeIII GTNAC 1 cut(s) 220
MalI GATC 4 cut(s) 202, 234, 358, 828
MboI GATC 4 cut(s) 200, 232, 356, 826
MboII GAAGA 1 cut(s) 82
MluCI AATT 6 cut(s) 55, 657, 680, 729, 799, 809
MlyI GAGTC 2 cut(s) 233, 421
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 5 cut(s) 92, 160, 333, 441, 816
MroXI GAANNNNTTC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 49
MspI CCGG 4 cut(s) 345, 453, 566, 621
MvaI CCWGG 5 cut(s) 374, 417, 582, 663, 771
MwoI GCNNNNNNNGC 6 cut(s) 251, 324, 395, 638, 755, 764
NciI CCSGG 5 cut(s) 345, 346, 453, 454, 567
NdeI CATATG 1 cut(s) 487
NdeII GATC 4 cut(s) 200, 232, 356, 826
NlaIII CATG 3 cut(s) 111, 443, 535
NlaIV GGNNCC 2 cut(s) 264, 691
NmuCI GTSAC 1 cut(s) 220
PaeR7I CTCGAG 1 cut(s) 164
PcsI WCGNNNNNNNCGW 3 cut(s) 80, 171, 180
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 31, 535
PfoI TCCNGGA 1 cut(s) 769
PkrI GCNGC 5 cut(s) 137, 287, 320, 400, 760
PleI GAGTC 2 cut(s) 233, 420
PpsI GAGTC 2 cut(s) 233, 420
Ppu21I YACGTR 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 86
Psp6I CCWGG 5 cut(s) 372, 415, 580, 661, 769
PspGI CCWGG 5 cut(s) 372, 415, 580, 661, 769
PspN4I GGNNCC 2 cut(s) 264, 691
PspPI GGNCC 4 cut(s) 252, 262, 491, 690
PspXI VCTCGAGB 1 cut(s) 164
PstI CTGCAG 2 cut(s) 751, 838
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 5 cut(s) 152, 479, 530, 564, 645
RsaNI GTAC 5 cut(s) 151, 478, 529, 563, 644
SatI GCNGC 5 cut(s) 136, 286, 319, 399, 759
Sau3AI GATC 4 cut(s) 200, 232, 356, 826
Sau96I GGNCC 4 cut(s) 252, 262, 491, 690
SbfI CCTGCAGG 1 cut(s) 751
SchI GAGTC 2 cut(s) 233, 421
SdaI CCTGCAGG 1 cut(s) 751
SfaNI GCATC 1 cut(s) 716
SfcI CTRYAG 3 cut(s) 520, 747, 834
Sfr274I CTCGAG 1 cut(s) 164
SinI GGWCC 3 cut(s) 262, 491, 690
SlaI CTCGAG 1 cut(s) 164
SmaI CCCGGG 2 cut(s) 346, 454
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse8387I CCTGCAGG 1 cut(s) 751
Sse9I AATT 6 cut(s) 55, 657, 680, 729, 799, 809
SsiI CCGC 8 cut(s) 133, 136, 195, 260, 286, 319, 605, 641
TaaI ACNGT 2 cut(s) 299, 574
TaiI ACGT 2 cut(s) 80, 408
TaqI TCGA 2 cut(s) 144, 165
TasI AATT 6 cut(s) 55, 657, 680, 729, 799, 809
TauI GCSGC 3 cut(s) 138, 288, 321
TfiI GAWTC 2 cut(s) 31, 535
TscAI CASTG 2 cut(s) 691, 706
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 2 cut(s) 398, 758
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 548
TspGWI ACGGA 2 cut(s) 516, 612
TspMI CCCGGG 2 cut(s) 344, 452
TspRI CASTG 2 cut(s) 691, 706
VpaK11BI GGWCC 3 cut(s) 262, 491, 690
XapI RAATTY 1 cut(s) 657
XhoI CTCGAG 1 cut(s) 164
XmaI CCCGGG 2 cut(s) 344, 452
XmiI GTMKAC 2 cut(s) 504, 635
XmnI GAANNNNTTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.