Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

20061375 .. 20062017

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023214

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCGGTGGGGACAATGGCCACCGCGGCTGGAGCTGCTGTGATTCTGTACATGTTTGGTCGGAGAGCGTTGTCGAAAGACGGCTTTGAGGACGACGATGACGACGACAACCGGAGAAGAGATTTCTCCAAGTCGAGATCGGCGAGGAGGAGGCTTTCTTGGCGACAGGCTCAGGCATTGGCCACATGGATCGAGTCAATGTCCACCTTGTTTGATACGTTGCGTTTCACTTACTCTGAAACTCTAGGCAAATGGCCGATCGGCGACTCTAGTTTTTCCACCACTACCACCACGACCTCCTCGTCCCCCACCGTGACTTGGATCGCTCCGGCTGCCTCCCCTGCAAAGACACATAGGAATCAGGATCGGGCTGGACCGATTCGTGAAGCATCCAACATCTTCGAGCTCCATGAGGTGATGGCGAGTAAGTCCAAATTCTCCTCCTCCTTCAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

152

Amino Acids

16.75

Weight (kDa)

9.51

Isoelectric Point (pI)

67.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	52 - 92	3e-06	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	5, 24, 26
AclWI	GGATC	3 cut(s)	197, 329, 372
AcoI	YGGCCR	3 cut(s)	18, 180, 254
AcsI	RAATTY	1 cut(s)	434
AcuI	CTGAAG	1 cut(s)	433
AfaI	GTAC	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	318
AflIII	ACRYGT	1 cut(s)	51
AluBI	AGCT	3 cut(s)	35, 406, 453
AluI	AGCT	3 cut(s)	35, 406, 453
Alw21I	GWGCWC	1 cut(s)	408
AlwI	GGATC	3 cut(s)	197, 329, 372
AoxI	GGCC	3 cut(s)	18, 180, 254
ApeKI	GCWGC	2 cut(s)	35, 332
ApoI	RAATTY	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	1 cut(s)	374
BalI	TGGCCA	2 cut(s)	20, 182
BanII	GRGCYC	1 cut(s)	408
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	22, 319
BccI	CCATC	1 cut(s)	412
BceAI	ACGGC	1 cut(s)	97
BfaI	CTAG	2 cut(s)	245, 270
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	27, 36, 333
BlsI	GCNGC	3 cut(s)	28, 37, 334
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmsI	GCATC	1 cut(s)	398
BpmI	CTGGAG	1 cut(s)	51
Bpu10I	CCTNAGC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	318
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	185
BseRI	GAGGAG	5 cut(s)	160, 163, 289, 430, 433
BseXI	GCAGC	2 cut(s)	22, 319
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	1 cut(s)	261
BshFI	GGCC	3 cut(s)	20, 182, 256
BsiEI	CGRYCG	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	112, 329
BslFI	GGGAC	2 cut(s)	25, 289
BslI	CCNNNNNNNGG	1 cut(s)	318
BsmFI	GGGAC	2 cut(s)	25, 289
BsnI	GGCC	3 cut(s)	20, 182, 256
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	5 cut(s)	137, 189, 258, 321, 364
BspACI	CCGC	3 cut(s)	5, 24, 26
BspANI	GGCC	3 cut(s)	20, 182, 256
BspCNI	CTCAG	1 cut(s)	184
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	3 cut(s)	197, 329, 372
BsrGI	TGTACA	1 cut(s)	48
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	137, 189, 258, 321, 364
Bst4CI	ACNGT	1 cut(s)	313
Bst6I	CTCTTC	1 cut(s)	112
BstAUI	TGTACA	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	171
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	5 cut(s)	140, 192, 261, 324, 367
BstMBI	GATC	5 cut(s)	137, 189, 258, 321, 364
BstMCI	CGRYCG	1 cut(s)	261
BstMWI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 332, 341
BstNSI	RCATGY	1 cut(s)	55
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	22, 319
BsuRI	GGCC	3 cut(s)	20, 182, 256
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	389
Cfr13I	GGNCC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	27
Csp6I	GTAC	1 cut(s)	49
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviAII	CATG	3 cut(s)	52, 186, 410
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	5 cut(s)	139, 191, 260, 323, 366
DpnII	GATC	5 cut(s)	137, 189, 258, 321, 364
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
EaeI	YGGCCR	3 cut(s)	18, 180, 254
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	374
Eco53kI	GAGCTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	408
FaeI	CATG	3 cut(s)	55, 189, 413
FaiI	YATR	4 cut(s)	53, 187, 354, 411
FaqI	GGGAC	2 cut(s)	25, 289
FatI	CATG	3 cut(s)	51, 185, 409
Fnu4HI	GCNGC	3 cut(s)	27, 36, 333
FokI	GGATG	1 cut(s)	376
FriOI	GRGCYC	1 cut(s)	408
Fsp4HI	GCNGC	3 cut(s)	27, 36, 333
FspBI	CTAG	2 cut(s)	245, 270
GluI	GCNGC	3 cut(s)	27, 36, 333
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	3 cut(s)	20, 182, 256
HapII	CCGG	2 cut(s)	112, 329
Hin1II	CATG	3 cut(s)	55, 189, 413
HinfI	GANTC	5 cut(s)	43, 194, 266, 358, 379
HpaII	CCGG	2 cut(s)	112, 329
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	1 cut(s)	204
Hpy188I	TCNGA	2 cut(s)	63, 238
Hpy188III	TCNNGA	3 cut(s)	135, 362, 383
Hpy8I	GTNNAC	1 cut(s)	204
Hpy99I	CGWCG	2 cut(s)	98, 107
HpyCH4III	ACNGT	1 cut(s)	313
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 332, 341
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	3 cut(s)	55, 189, 413
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	137, 189, 258, 321, 364
LmnI	GCTCC	3 cut(s)	32, 331, 411
LpnPI	CCDG	8 cut(s)	15, 125, 152, 158, 342, 347, 354, 357
Lsp1109I	GCAGC	2 cut(s)	22, 319
LweI	GCATC	1 cut(s)	398
MaeI	CTAG	2 cut(s)	245, 270
MaeII	ACGT	1 cut(s)	218
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	5 cut(s)	139, 191, 260, 323, 366
MboI	GATC	5 cut(s)	137, 189, 258, 321, 364
MboII	GAAGA	2 cut(s)	129, 391
MhlI	GDGCHC	1 cut(s)	408
MlsI	TGGCCA	2 cut(s)	20, 182
MluCI	AATT	1 cut(s)	434
MluNI	TGGCCA	2 cut(s)	20, 182
MlyI	GAGTC	2 cut(s)	203, 260
MmeI	TCCRAC	2 cut(s)	41, 417
Mox20I	TGGCCA	2 cut(s)	20, 182
MscI	TGGCCA	2 cut(s)	20, 182
Msp20I	TGGCCA	2 cut(s)	20, 182
MspA1I	CMGCKG	2 cut(s)	26, 453
MspI	CCGG	2 cut(s)	112, 329
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	6 cut(s)	26, 32, 35, 160, 332, 341
NdeII	GATC	5 cut(s)	137, 189, 258, 321, 364
NlaIII	CATG	3 cut(s)	55, 189, 413
NmuCI	GTSAC	1 cut(s)	313
NspI	RCATGY	1 cut(s)	55
PciI	ACATGT	1 cut(s)	51
PcsI	WCGNNNNNNNCGW	4 cut(s)	99, 102, 140, 299
PfeI	GAWTC	3 cut(s)	43, 358, 379
PkrI	GCNGC	3 cut(s)	28, 37, 334
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	2 cut(s)	202, 260
PpsI	GAGTC	2 cut(s)	202, 260
PscI	ACATGT	1 cut(s)	51
Psp124BI	GAGCTC	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	374
PvuI	CGATCG	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	453
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacI	GAGCTC	1 cut(s)	408
SacII	CCGCGG	1 cut(s)	27
SatI	GCNGC	3 cut(s)	27, 36, 333
Sau3AI	GATC	5 cut(s)	137, 189, 258, 321, 364
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	2 cut(s)	203, 260
SduI	GDGCHC	1 cut(s)	408
SetI	ASST	7 cut(s)	37, 209, 221, 299, 408, 417, 455
SfaNI	GCATC	1 cut(s)	398
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	1 cut(s)	434
SsiI	CCGC	3 cut(s)	5, 24, 26
SspMI	CTAG	2 cut(s)	245, 270
SstI	GAGCTC	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	313
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	4 cut(s)	74, 134, 192, 402
TaqII	GACCGA	1 cut(s)	391
TasI	AATT	1 cut(s)	434
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	43, 358, 379
TseFI	GTSAC	1 cut(s)	313
TseI	GCWGC	2 cut(s)	35, 332
Tsp45I	GTSAC	1 cut(s)	313
VpaK11BI	GGWCC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	55
XspI	CTAG	2 cut(s)	245, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.