Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003002.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

286598 .. 288021

Gene Structure 1424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003002.1_g000068.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atggcggcggccaccaccgccggagctgctgtgattctgtactacatgtttggccggagagcgtcgtcgaagcggagatttctccaagtcgagatcgaagaggaggaggctttctcggcgaccggctcaggcaccggccacgtggatcgactcaatgtctaccttgtccgatacgctcttctggagcctgcgttcaccattctacgtgataaagattcaaaatgctttcttatgttgatatgtggtacacatagtatcaaagatacactaactgccacaattggtatagtggcccctttccaccattcagttttggatgatggtggaataagcaacttagtcctaggatatgctcactatgggatggttgctgcagcctgttggattgctcagctcaatactccttgcatgcttaaggctcctggtgaatatcctaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

146

Amino Acids

15.88

Weight (kDa)

6.95

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	1 cut(s)	159
AciI	CCGC	4 cut(s)	5, 8, 18, 73
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	3 cut(s)	9, 52, 136
AcvI	CACGTG	1 cut(s)	142
AfaI	GTAC	2 cut(s)	41, 247
AflII	CTTAAG	1 cut(s)	413
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	1 cut(s)	219
AhdI	GACNNNNNGTC	1 cut(s)	155
AjnI	CCWGG	1 cut(s)	421
AloI	GAACNNNNNNTCC	2 cut(s)	176, 208
AluBI	AGCT	2 cut(s)	26, 394
AluI	AGCT	2 cut(s)	26, 394
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	4 cut(s)	9, 52, 136, 291
ApeKI	GCWGC	3 cut(s)	26, 371, 374
AspA2I	CCTAGG	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	2 cut(s)	187, 437
AvrII	CCTAGG	1 cut(s)	343
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BbvI	GCAGC	3 cut(s)	13, 358, 386
BccI	CCATC	2 cut(s)	314, 358
BciT130I	CCWGG	1 cut(s)	423
BfaI	CTAG	1 cut(s)	344
BfmI	CTRYAG	1 cut(s)	372
BfrI	CTTAAG	1 cut(s)	413
BisI	GCNGC	5 cut(s)	6, 9, 27, 372, 375
BlnI	CCTAGG	1 cut(s)	343
BlpI	GCTNAGC	1 cut(s)	390
BlsI	GCNGC	5 cut(s)	7, 10, 28, 373, 376
Bme1390I	CCNGG	1 cut(s)	423
BmeRI	GACNNNNNGTC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	4 cut(s)	133, 186, 294, 420
BmrFI	CCNGG	1 cut(s)	423
BplI	GAGNNNNNCTC	2 cut(s)	98, 130
BpmI	CTGGAG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	127
Bpu1102I	GCTNAGC	1 cut(s)	390
BsaAI	YACGTR	2 cut(s)	142, 206
BsaJI	CCNNGG	1 cut(s)	343
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 176, 206
Bse118I	RCCGGY	2 cut(s)	122, 134
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	2 cut(s)	322, 369
BseMII	CTCAG	2 cut(s)	141, 404
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	3 cut(s)	13, 358, 386
Bsh1285I	CGRYCG	1 cut(s)	123
BshFI	GGCC	4 cut(s)	11, 54, 138, 293
BshNI	GGYRCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	123
BsiSI	CCGG	4 cut(s)	21, 55, 123, 135
BsnI	GGCC	4 cut(s)	11, 54, 138, 293
Bsp143I	GATC	2 cut(s)	93, 145
Bsp1720I	GCTNAGC	1 cut(s)	390
BspACI	CCGC	4 cut(s)	5, 8, 18, 73
BspANI	GGCC	4 cut(s)	11, 54, 138, 293
BspCNI	CTCAG	2 cut(s)	140, 403
BspLI	GGNNCC	4 cut(s)	133, 186, 294, 420
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	153
BspQI	GCTCTTC	1 cut(s)	183
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	413
BsrFI	RCCGGY	2 cut(s)	122, 134
BssAI	RCCGGY	2 cut(s)	122, 134
BssECI	CCNNGG	1 cut(s)	343
BssMI	GATC	2 cut(s)	93, 145
BssT1I	CCWWGG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	423
Bst6I	CTCTTC	2 cut(s)	93, 183
BstAFI	CTTAAG	1 cut(s)	413
BstBAI	YACGTR	2 cut(s)	142, 206
BstC8I	GCNNGC	2 cut(s)	189, 410
BstDEI	CTNAG	4 cut(s)	127, 337, 390, 435
BstF5I	GGATG	2 cut(s)	322, 369
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMCI	CGRYCG	1 cut(s)	123
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 26, 116
BstNI	CCWGG	1 cut(s)	423
BstNSI	RCATGY	2 cut(s)	49, 412
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	1 cut(s)	372
BstV1I	GCAGC	3 cut(s)	13, 358, 386
BsuRI	GGCC	4 cut(s)	11, 54, 138, 293
BtsCI	GGATG	2 cut(s)	322, 369
Cac8I	GCNNGC	2 cut(s)	189, 410
Cfr10I	RCCGGY	2 cut(s)	122, 134
Cfr13I	GGNCC	1 cut(s)	292
CseI	GACGC	1 cut(s)	51
Csp6I	GTAC	2 cut(s)	40, 246
CviAII	CATG	2 cut(s)	46, 409
CviQI	GTAC	2 cut(s)	40, 246
DdeI	CTNAG	4 cut(s)	127, 337, 390, 435
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
DriI	GACNNNNNGTC	1 cut(s)	155
EaeI	YGGCCR	3 cut(s)	9, 52, 136
Eam1104I	CTCTTC	2 cut(s)	93, 183
Eam1105I	GACNNNNNGTC	1 cut(s)	155
EarI	CTCTTC	2 cut(s)	93, 183
Eco130I	CCWWGG	1 cut(s)	343
Eco72I	CACGTG	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	343
FaeI	CATG	2 cut(s)	49, 412
FaiI	YATR	8 cut(s)	47, 233, 241, 252, 287, 351, 360, 410
FatI	CATG	2 cut(s)	45, 408
FblI	GTMKAC	1 cut(s)	159
Fnu4HI	GCNGC	5 cut(s)	6, 9, 27, 372, 375
FokI	GGATG	2 cut(s)	329, 376
Fsp4HI	GCNGC	5 cut(s)	6, 9, 27, 372, 375
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	5 cut(s)	6, 9, 27, 372, 375
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	4 cut(s)	11, 54, 138, 293
HapII	CCGG	4 cut(s)	21, 55, 123, 135
HgaI	GACGC	1 cut(s)	51
Hin1II	CATG	2 cut(s)	49, 412
HinfI	GANTC	3 cut(s)	34, 150, 215
HpaII	CCGG	4 cut(s)	21, 55, 123, 135
HphI	GGTGA	2 cut(s)	187, 437
Hpy166II	GTNNAC	3 cut(s)	160, 195, 248
Hpy188I	TCNGA	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	91, 182
Hpy8I	GTNNAC	3 cut(s)	160, 195, 248
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyCH4IV	ACGT	2 cut(s)	141, 205
HpyCH4V	TGCA	2 cut(s)	374, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 26, 116
HpyF3I	CTNAG	4 cut(s)	127, 337, 390, 435
HpySE526I	ACGT	2 cut(s)	141, 205
Hsp92II	CATG	2 cut(s)	49, 412
Kzo9I	GATC	2 cut(s)	93, 145
LguI	GCTCTTC	1 cut(s)	183
LmnI	GCTCC	3 cut(s)	23, 184, 424
Lsp1109I	GCAGC	3 cut(s)	13, 358, 386
MaeI	CTAG	1 cut(s)	344
MaeII	ACGT	2 cut(s)	141, 205
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	2 cut(s)	110, 170
MfeI	CAATTG	1 cut(s)	279
MluCI	AATT	1 cut(s)	279
MlyI	GAGTC	1 cut(s)	144
MmeI	TCCRAC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	94, 97, 100
MseI	TTAA	1 cut(s)	414
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	4 cut(s)	21, 55, 123, 135
MspR9I	CCNGG	1 cut(s)	423
MunI	CAATTG	1 cut(s)	279
MvaI	CCWGG	1 cut(s)	423
MwoI	GCNNNNNNNGC	3 cut(s)	17, 26, 116
NdeII	GATC	2 cut(s)	93, 145
NlaIII	CATG	2 cut(s)	49, 412
NlaIV	GGNNCC	4 cut(s)	133, 186, 294, 420
NmeAIII	GCCGAG	1 cut(s)	95
NspI	RCATGY	2 cut(s)	49, 412
PaeI	GCATGC	1 cut(s)	412
PciI	ACATGT	1 cut(s)	45
PciSI	GCTCTTC	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	34, 215
PkrI	GCNGC	5 cut(s)	7, 10, 28, 373, 376
PleI	GAGTC	1 cut(s)	144
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	144
Ppu21I	YACGTR	2 cut(s)	142, 206
PscI	ACATGT	1 cut(s)	45
Psp6I	CCWGG	1 cut(s)	421
PspCI	CACGTG	1 cut(s)	142
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	4 cut(s)	133, 186, 294, 420
PspPI	GGNCC	1 cut(s)	292
PstI	CTGCAG	1 cut(s)	376
RsaI	GTAC	2 cut(s)	41, 247
RsaNI	GTAC	2 cut(s)	40, 246
SapI	GCTCTTC	1 cut(s)	183
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	5 cut(s)	6, 9, 27, 372, 375
Sau3AI	GATC	2 cut(s)	93, 145
Sau96I	GGNCC	1 cut(s)	292
SchI	GAGTC	1 cut(s)	144
ScrFI	CCNGG	1 cut(s)	423
SetI	ASST	5 cut(s)	28, 144, 165, 208, 396
SfcI	CTRYAG	1 cut(s)	372
SmlI	CTYRAG	1 cut(s)	413
SmoI	CTYRAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	412
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	4 cut(s)	5, 8, 18, 73
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	343
TaiI	ACGT	2 cut(s)	144, 208
TaqI	TCGA	4 cut(s)	68, 90, 96, 148
TasI	AATT	1 cut(s)	279
TatI	WGTACW	1 cut(s)	39
TauI	GCSGC	2 cut(s)	8, 11
TfiI	GAWTC	2 cut(s)	34, 215
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseI	GCWGC	3 cut(s)	26, 371, 374
Vha464I	CTTAAG	1 cut(s)	413
XceI	RCATGY	2 cut(s)	49, 412
XmaJI	CCTAGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	159
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.