Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000045.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

247193 .. 248406

Gene Structure 1214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000045.1_g000074.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

atggccagcgccgccggagatgctgtgattctgtactacatgtttggccggagagcgtcgtcgaagcggagatttctccaagtccagatcggtgaggaggagggtttctcgacgatcggctcaggcgccagccacgtggatcgagtcaatgggaatttacaagtggcgagtgtgtatgctagtagtgacaatgtgcagctcaaaggcgctaagattattgaggaactaaattattgcttgaagctgttgacgctttgttatctgttttccaagaaactgttttcggtgtttttagagtctggcggtttctctatggaagatgtccttttttataagcccaaggctgcgcttctgaagcctacattcaccattctacgtgataaagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

129

Amino Acids

14.31

Weight (kDa)

8.89

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AccB1I	GGYRCC	1 cut(s)	125
AciI	CCGC	3 cut(s)	12, 67, 303
AclWI	GGATC	1 cut(s)	147
AcoI	YGGCCR	2 cut(s)	3, 46
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	1 cut(s)	374
AcvI	CACGTG	1 cut(s)	136
AcyI	GRCGYC	1 cut(s)	126
AfaI	GTAC	1 cut(s)	35
AflIII	ACRYGT	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	241
AluBI	AGCT	2 cut(s)	199, 244
AluI	AGCT	2 cut(s)	199, 244
AlwI	GGATC	1 cut(s)	147
AoxI	GGCC	2 cut(s)	3, 46
ApeKI	GCWGC	2 cut(s)	196, 344
ApoI	RAATTY	1 cut(s)	154
AspLEI	GCGC	4 cut(s)	11, 128, 209, 349
AsuHPI	GGTGA	2 cut(s)	104, 358
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	125
BbrPI	CACGTG	1 cut(s)	136
BbvI	GCAGC	2 cut(s)	208, 331
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	3 cut(s)	12, 129, 210
BisI	GCNGC	3 cut(s)	12, 197, 345
BlsI	GCNGC	3 cut(s)	13, 198, 346
BmiI	GGNNCC	1 cut(s)	127
BmsI	GCATC	1 cut(s)	10
BplI	GAGNNNNNCTC	2 cut(s)	92, 124
Bpu10I	CCTNAGC	1 cut(s)	121
BsaAI	YACGTR	2 cut(s)	136, 377
BsaHI	GRCGYC	1 cut(s)	126
BsaJI	CCNNGG	1 cut(s)	339
BsaXI	ACNNNNNCTCC	2 cut(s)	9, 39
BseDI	CCNNGG	1 cut(s)	339
BseMII	CTCAG	1 cut(s)	135
BseRI	GAGGAG	2 cut(s)	110, 113
BseXI	GCAGC	2 cut(s)	208, 331
BsgI	GTGCAG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	117
BshFI	GGCC	2 cut(s)	5, 48
BshNI	GGYRCC	1 cut(s)	125
BsiEI	CGRYCG	1 cut(s)	117
BsiSI	CCGG	2 cut(s)	15, 49
BsnI	GGCC	2 cut(s)	5, 48
Bsp143I	GATC	3 cut(s)	87, 114, 139
BspACI	CCGC	3 cut(s)	12, 67, 303
BspANI	GGCC	2 cut(s)	5, 48
BspCNI	CTCAG	1 cut(s)	134
BspLI	GGNNCC	1 cut(s)	127
BspPI	GGATC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	3 cut(s)	87, 114, 139
BssNI	GRCGYC	1 cut(s)	126
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	279
BstACI	GRCGYC	1 cut(s)	126
BstBAI	YACGTR	2 cut(s)	136, 377
BstC8I	GCNNGC	2 cut(s)	7, 130
BstDEI	CTNAG	2 cut(s)	121, 210
BstH2I	RGCGCY	3 cut(s)	12, 129, 210
BstHHI	GCGC	4 cut(s)	11, 128, 209, 349
BstKTI	GATC	3 cut(s)	90, 117, 142
BstMBI	GATC	3 cut(s)	87, 114, 139
BstMCI	CGRYCG	1 cut(s)	117
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 250, 355
BstNSI	RCATGY	1 cut(s)	43
BstV1I	GCAGC	2 cut(s)	208, 331
BstXI	CCANNNNNNTGG	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	5, 48
Cac8I	GCNNGC	2 cut(s)	7, 130
CfoI	GCGC	4 cut(s)	11, 128, 209, 349
CseI	GACGC	2 cut(s)	45, 259
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	1 cut(s)	40
CviJI	RGCY	9 cut(s)	5, 48, 120, 132, 199, 244, 337, 344, 358
CviKI_1	RGCY	9 cut(s)	5, 48, 120, 132, 199, 244, 337, 344, 358
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	121, 210
DinI	GGCGCC	1 cut(s)	127
DpnI	GATC	3 cut(s)	89, 116, 141
DpnII	GATC	3 cut(s)	87, 114, 139
EaeI	YGGCCR	2 cut(s)	3, 46
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	374
Eco72I	CACGTG	1 cut(s)	136
EcoT14I	CCWWGG	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	127
EheI	GGCGCC	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	1 cut(s)	43
FaiI	YATR	4 cut(s)	41, 177, 314, 333
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	1 cut(s)	39
Fnu4HI	GCNGC	3 cut(s)	12, 197, 345
Fsp4HI	GCNGC	3 cut(s)	12, 197, 345
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	4 cut(s)	10, 127, 208, 348
GluI	GCNGC	3 cut(s)	12, 197, 345
HaeII	RGCGCY	3 cut(s)	12, 129, 210
HaeIII	GGCC	2 cut(s)	5, 48
HapII	CCGG	2 cut(s)	15, 49
HgaI	GACGC	2 cut(s)	45, 259
HhaI	GCGC	4 cut(s)	11, 128, 209, 349
Hin1I	GRCGYC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	43
Hin6I	GCGC	4 cut(s)	9, 126, 207, 347
HinP1I	GCGC	4 cut(s)	9, 126, 207, 347
HincII	GTYRAC	1 cut(s)	249
HindII	GTYRAC	1 cut(s)	249
HinfI	GANTC	3 cut(s)	28, 144, 296
HpaII	CCGG	2 cut(s)	15, 49
HphI	GGTGA	2 cut(s)	104, 358
Hpy166II	GTNNAC	1 cut(s)	249
Hpy188I	TCNGA	1 cut(s)	354
Hpy188III	TCNNGA	2 cut(s)	85, 109
Hpy8I	GTNNAC	1 cut(s)	249
Hpy99I	CGWCG	3 cut(s)	61, 64, 115
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4IV	ACGT	2 cut(s)	135, 376
HpyCH4V	TGCA	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 250, 355
HpyF3I	CTNAG	2 cut(s)	121, 210
HpySE526I	ACGT	2 cut(s)	135, 376
Hsp92I	GRCGYC	1 cut(s)	126
Hsp92II	CATG	1 cut(s)	43
HspAI	GCGC	4 cut(s)	9, 126, 207, 347
KasI	GGCGCC	1 cut(s)	125
Kzo9I	GATC	3 cut(s)	87, 114, 139
LpnPI	CCDG	7 cut(s)	19, 28, 62, 98, 108, 142, 285
Lsp1109I	GCAGC	2 cut(s)	208, 331
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	135, 376
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	3 cut(s)	89, 116, 141
MboI	GATC	3 cut(s)	87, 114, 139
MboII	GAAGA	1 cut(s)	329
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	154, 229
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	126
MlyI	GAGTC	2 cut(s)	153, 305
MnlI	CCTC	4 cut(s)	88, 91, 94, 214
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	15, 49
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 250, 355
NarI	GGCGCC	1 cut(s)	126
NdeII	GATC	3 cut(s)	87, 114, 139
NlaIII	CATG	1 cut(s)	43
NlaIV	GGNNCC	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	185
NspI	RCATGY	1 cut(s)	43
PciI	ACATGT	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	28
PkrI	GCNGC	3 cut(s)	13, 198, 346
Ple19I	CGATCG	1 cut(s)	117
PleI	GAGTC	2 cut(s)	152, 304
PluTI	GGCGCC	1 cut(s)	129
PmaCI	CACGTG	1 cut(s)	136
PmlI	CACGTG	1 cut(s)	136
PpsI	GAGTC	2 cut(s)	152, 304
Ppu21I	YACGTR	2 cut(s)	136, 377
PscI	ACATGT	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	333
PspCI	CACGTG	1 cut(s)	136
PspN4I	GGNNCC	1 cut(s)	127
PvuI	CGATCG	1 cut(s)	117
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SatI	GCNGC	3 cut(s)	12, 197, 345
Sau3AI	GATC	3 cut(s)	87, 114, 139
SchI	GAGTC	2 cut(s)	153, 305
SetI	ASST	4 cut(s)	138, 201, 246, 379
SfaNI	GCATC	1 cut(s)	10
SfoI	GGCGCC	1 cut(s)	127
Sse9I	AATT	2 cut(s)	154, 229
SsiI	CCGC	3 cut(s)	12, 67, 303
SspDI	GGCGCC	1 cut(s)	125
SspMI	CTAG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	279
TaiI	ACGT	2 cut(s)	138, 379
TaqI	TCGA	3 cut(s)	62, 110, 142
TasI	AATT	2 cut(s)	154, 229
TatI	WGTACW	1 cut(s)	33
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	196, 344
Tsp45I	GTSAC	1 cut(s)	185
XapI	RAATTY	1 cut(s)	154
XceI	RCATGY	1 cut(s)	43
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.