Rh4AG250000

Encoded by

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Reverse (-)
56199752 .. 56204954
5203 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG250000.1

Sequence Viewer

Length: 1200 bp
ATGATAAAAAGATTATTATCTCTGTTATTTTTCTATCTAATGTTGAAAATTGCAATTCAGGTTGTTGGACATTCACTGGGGGGTGGTACAGCTGCTTTATTAACATACATTCTCCGGGAACAGAGAGAATTATCTTCAAGTACTTGCATTACATTTGCCCCAGCTGCCTGTATAACAATGGAGTTGGCAGAATCTGGCAAGCACTTCATCACTACTATTATCAATGGCTCTGACCTGGTGCCTACATTCTCAGCAGCTTCTGTTGATGACCTCCGCTCTGAGGTCACAGCTTCATCTTGGTTAAATGATTTGCGGGATCAGGTTGAGCATACACGTGTTTTGAATGTTGTTTATCGTTCAGCAACTGCTCTGGGTTCTCGTCTGCCATCTATAGCTAGTGCAAAAGCCAGGGTTGCTGGTGCAGGTGCACTATTGAGGCCAGTATCCAGCAGTACTCAGGTTGTGATGAAGCGTGCACAAAATGTTGCCCTAGCTGTTGTTAGAACCCGTTCATCTATATCATCTTGGTCTTGCATGGGTGCACGTCGCCGTAATGTGGGTCAATCATTGAACTCTACCATGGGTGATTCACATGAAACTTCTGTAATATGTGAAAGGGATTCTGAATCTCTGGCTGAAGGAACAACCGCTGACCCAATGCTGGATAATTTGGTGTGTAGTTCTGGTGGATCAGGTCATGATGATACTGATGAAGAGGAGCAGCTTTTGCCAGTGCATGAAGATCCAACCACATCTGCTGTCGAAGACATTACTGAAGGTGAATTGTGGTATGAACTGGAGAAGGAGCTTACGAGGCAGGAGAATGAAATCAATGTTCAGGCTAAGGAGGAAGAAGCTGCTGCAGTTAAAGAAATAACCGAGGAAGAAAGTATGCTGGTTGATGTTGCAGAAAGCATTACGCCAATCTCTTCCGCAGACATTTCTGAGAGCCACCGGTTCTATCCCCCTGGCAGAATCATGCACATTATATCAGTAACCTCATCTGATTCTACCGATTTAGACCATGATGGACCGAGTGAAGAGCATGTTGGTATATACGAGACACGTAGAGAACTGTACAGTAAGCTCCGACTTTCTAGAACGATGATCAACGATCACTATATGCCTATGTATAAGAAAATGATGGAATTGTTGATTAGAGAACTGGAAAATGAAGAAGCAAATAGTTCTGTTATGTAA

Protein Analysis

399

Amino Acids

43.92

Weight (kDa)

4.83

Isoelectric Point (pI)

58.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 16 - 85 1.8e-14 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 413
AccB1I GGYRCC 1 cut(s) 238
AccBSI CCGCTC 1 cut(s) 276
AciI CCGC 4 cut(s) 274, 313, 648, 933
AclWI GGATC 3 cut(s) 324, 697, 737
AcuI CTGAAG 2 cut(s) 657, 795
AcvI CACGTG 1 cut(s) 335
AfaI GTAC 4 cut(s) 88, 142, 454, 1079
AfiI CCNNNNNNNGG 3 cut(s) 280, 556, 661
AflIII ACRYGT 3 cut(s) 332, 334, 1064
AgeI ACCGGT 1 cut(s) 954
AgsI TTSAA 4 cut(s) 46, 138, 343, 571
AjiI CACGTC 1 cut(s) 545
AjnI CCWGG 3 cut(s) 234, 407, 967
AjuI GAANNNNNNNTTGG 2 cut(s) 1032, 1064
Alw21I GWGCWC 3 cut(s) 430, 478, 544
Alw26I GTCTC 1 cut(s) 1055
Alw44I GTGCAC 3 cut(s) 426, 474, 540
AlwI GGATC 3 cut(s) 324, 697, 737
AlwNI CAGNNNCTG 3 cut(s) 194, 260, 365
AoxI GGCC 1 cut(s) 437
ApaLI GTGCAC 3 cut(s) 426, 474, 540
ApeKI GCWGC 6 cut(s) 92, 164, 254, 721, 857, 860
AsiGI ACCGGT 1 cut(s) 954
Asp700I GAANNNNTTC 1 cut(s) 508
AspS9I GGNCC 1 cut(s) 1031
AsuC2I CCSGG 1 cut(s) 116
AsuHPI GGTGA 2 cut(s) 596, 791
AvaII GGWCC 1 cut(s) 1031
BaeGI GKGCMC 3 cut(s) 430, 478, 544
BanI GGYRCC 1 cut(s) 238
BbrPI CACGTG 1 cut(s) 335
BbsI GAAGAC 1 cut(s) 771
Bbv12I GWGCWC 3 cut(s) 430, 478, 544
BbvI GCAGC 6 cut(s) 79, 151, 266, 733, 844, 847
BccI CCATC 3 cut(s) 394, 1022, 1138
BceAI ACGGC 1 cut(s) 534
BciT130I CCWGG 3 cut(s) 236, 409, 969
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 1107
BcnI CCSGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 1055
BfaI CTAG 3 cut(s) 396, 491, 1098
BfmI CTRYAG 2 cut(s) 390, 861
BfuAI ACCTGC 1 cut(s) 413
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 6 cut(s) 93, 165, 255, 722, 858, 861
BlsI GCNGC 6 cut(s) 94, 166, 256, 723, 859, 862
BmcAI AGTACT 2 cut(s) 142, 454
Bme1390I CCNGG 4 cut(s) 116, 236, 409, 969
Bme18I GGWCC 1 cut(s) 1031
BmgBI CACGTC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 4 cut(s) 116, 236, 409, 969
BmrI ACTGGG 1 cut(s) 86
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 771
BpmI CTGGAG 1 cut(s) 818
Bpu10I CCTNAGC 1 cut(s) 843
BpuMI CCSGG 1 cut(s) 116
BsaAI YACGTR 2 cut(s) 335, 1067
BsaBI GATNNNNATC 1 cut(s) 16
BsaJI CCNNGG 4 cut(s) 408, 579, 879, 967
BsaWI WCCGGW 1 cut(s) 954
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 556, 661
Bse118I RCCGGY 1 cut(s) 954
Bse1I ACTGG 5 cut(s) 81, 440, 731, 801, 1170
Bse8I GATNNNNATC 1 cut(s) 16
BseBI CCWGG 3 cut(s) 236, 409, 969
BseDI CCNNGG 4 cut(s) 408, 579, 879, 967
BseJI GATNNNNATC 1 cut(s) 16
BseLI CCNNNNNNNGG 3 cut(s) 280, 556, 661
BseMII CTCAG 4 cut(s) 264, 270, 470, 936
BseNI ACTGG 5 cut(s) 81, 440, 731, 801, 1170
BseRI GAGGAG 1 cut(s) 731
BseSI GKGCMC 3 cut(s) 430, 478, 544
BseXI GCAGC 6 cut(s) 79, 151, 266, 733, 844, 847
BseYI CCCAGC 1 cut(s) 160
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 238
BshTI ACCGGT 1 cut(s) 954
BsiHKAI GWGCWC 3 cut(s) 430, 478, 544
BsiSI CCGG 2 cut(s) 115, 955
BslI CCNNNNNNNGG 3 cut(s) 280, 556, 661
BsmAI GTCTC 1 cut(s) 1055
BsnI GGCC 1 cut(s) 439
Bsp1286I GDGCHC 3 cut(s) 430, 478, 544
Bsp1407I TGTACA 1 cut(s) 1077
Bsp143I GATC 5 cut(s) 316, 689, 742, 1107, 1114
Bsp19I CCATGG 1 cut(s) 579
BspACI CCGC 4 cut(s) 274, 313, 648, 933
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 4 cut(s) 263, 271, 469, 937
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 1 cut(s) 240
BspMAI CTGCAG 1 cut(s) 865
BspMI ACCTGC 1 cut(s) 413
BspPI GGATC 3 cut(s) 324, 697, 737
BspQI GCTCTTC 1 cut(s) 1035
BspT107I GGYRCC 1 cut(s) 238
BsrBI CCGCTC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 954
BsrGI TGTACA 1 cut(s) 1077
BsrI ACTGG 5 cut(s) 81, 440, 731, 801, 1170
BssAI RCCGGY 1 cut(s) 954
BssECI CCNNGG 4 cut(s) 408, 579, 879, 967
BssMI GATC 5 cut(s) 316, 689, 742, 1107, 1114
BssT1I CCWWGG 1 cut(s) 579
Bst2UI CCWGG 3 cut(s) 236, 409, 969
Bst4CI ACNGT 2 cut(s) 1077, 1082
Bst6I CTCTTC 3 cut(s) 708, 934, 1035
BstAPI GCANNNNNTGC 1 cut(s) 727
BstAUI TGTACA 1 cut(s) 1077
BstBAI YACGTR 2 cut(s) 335, 1067
BstC8I GCNNGC 2 cut(s) 200, 474
BstDEI CTNAG 5 cut(s) 250, 279, 456, 843, 945
BstDSI CCRYGG 1 cut(s) 579
BstKTI GATC 5 cut(s) 319, 692, 745, 1110, 1117
BstMAI GTCTC 1 cut(s) 1055
BstMBI GATC 5 cut(s) 316, 689, 742, 1107, 1114
BstMWI GCNNNNNNNGC 4 cut(s) 164, 413, 727, 814
BstNI CCWGG 3 cut(s) 236, 409, 969
BstNSI RCATGY 1 cut(s) 1049
BstSCI CCNGG 4 cut(s) 114, 234, 407, 967
BstSFI CTRYAG 2 cut(s) 390, 861
BstSLI GKGCMC 3 cut(s) 430, 478, 544
BstV1I GCAGC 6 cut(s) 79, 151, 266, 733, 844, 847
BstV2I GAAGAC 1 cut(s) 771
BstX2I RGATCY 1 cut(s) 742
BstYI RGATCY 1 cut(s) 742
BsuI GTATCC 1 cut(s) 454
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 579
BtrI CACGTC 1 cut(s) 545
BtsIMutI CAGTG 2 cut(s) 74, 738
BveI ACCTGC 1 cut(s) 413
Cac8I GCNNGC 2 cut(s) 200, 474
CaiI CAGNNNCTG 3 cut(s) 194, 260, 365
CciI TCATGA 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 954
Cfr13I GGNCC 1 cut(s) 1031
CsiI ACCWGGT 1 cut(s) 234
Csp6I GTAC 4 cut(s) 87, 141, 453, 1078
CspAI ACCGGT 1 cut(s) 954
CviAII CATG 8 cut(s) 535, 580, 593, 698, 737, 979, 1025, 1046
CviQI GTAC 4 cut(s) 87, 141, 453, 1078
DdeI CTNAG 5 cut(s) 250, 279, 456, 843, 945
DpnI GATC 5 cut(s) 318, 691, 744, 1109, 1116
DpnII GATC 5 cut(s) 316, 689, 742, 1107, 1114
Eam1104I CTCTTC 3 cut(s) 708, 934, 1035
EarI CTCTTC 3 cut(s) 708, 934, 1035
Eco130I CCWWGG 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 1031
Eco57I CTGAAG 2 cut(s) 657, 795
Eco72I CACGTG 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 234, 407, 967
EcoT14I CCWWGG 1 cut(s) 579
ErhI CCWWGG 1 cut(s) 579
FaeI CATG 8 cut(s) 538, 583, 596, 701, 740, 982, 1028, 1049
FatI CATG 8 cut(s) 534, 579, 592, 697, 736, 978, 1024, 1045
FauI CCCGC 1 cut(s) 306
FbaI TGATCA 1 cut(s) 1107
Fnu4HI GCNGC 6 cut(s) 93, 165, 255, 722, 858, 861
Fsp4HI GCNGC 6 cut(s) 93, 165, 255, 722, 858, 861
FspBI CTAG 3 cut(s) 396, 491, 1098
GluI GCNGC 6 cut(s) 93, 165, 255, 722, 858, 861
GsaI CCCAGC 1 cut(s) 164
GsuI CTGGAG 1 cut(s) 818
HaeIII GGCC 1 cut(s) 439
HapII CCGG 2 cut(s) 115, 955
Hin1II CATG 8 cut(s) 538, 583, 596, 701, 740, 982, 1028, 1049
HinfI GANTC 6 cut(s) 191, 587, 620, 626, 975, 1007
HpaII CCGG 2 cut(s) 115, 955
HphI GGTGA 2 cut(s) 596, 791
Hpy166II GTNNAC 3 cut(s) 428, 476, 542
Hpy188I TCNGA 6 cut(s) 232, 280, 625, 946, 1006, 1091
Hpy188III TCNNGA 2 cut(s) 698, 1098
Hpy8I GTNNAC 3 cut(s) 428, 476, 542
Hpy99I CGWCG 1 cut(s) 549
HpyAV CCTTC 3 cut(s) 632, 770, 796
HpyCH4III ACNGT 2 cut(s) 1077, 1082
HpyCH4IV ACGT 3 cut(s) 334, 544, 1066
HpyF10VI GCNNNNNNNGC 4 cut(s) 164, 413, 727, 814
HpyF3I CTNAG 5 cut(s) 250, 279, 456, 843, 945
HpySE526I ACGT 3 cut(s) 334, 544, 1066
Hsp92II CATG 8 cut(s) 538, 583, 596, 701, 740, 982, 1028, 1049
Ksp22I TGATCA 1 cut(s) 1107
Kzo9I GATC 5 cut(s) 316, 689, 742, 1107, 1114
LguI GCTCTTC 1 cut(s) 1035
LmnI GCTCC 3 cut(s) 718, 805, 1092
Lsp1109I GCAGC 6 cut(s) 79, 151, 266, 733, 844, 847
MabI ACCWGGT 1 cut(s) 234
MaeI CTAG 3 cut(s) 396, 491, 1098
MaeII ACGT 3 cut(s) 334, 544, 1066
MaeIII GTNAC 2 cut(s) 283, 994
MalI GATC 5 cut(s) 318, 691, 744, 1109, 1116
MbiI CCGCTC 1 cut(s) 276
MboI GATC 5 cut(s) 316, 689, 742, 1107, 1114
MboII GAAGA 9 cut(s) 126, 725, 752, 776, 863, 896, 921, 1052, 1187
MflI RGATCY 1 cut(s) 742
MhlI GDGCHC 3 cut(s) 430, 478, 544
MluCI AATT 6 cut(s) 48, 54, 128, 667, 782, 1148
MmeI TCCRAC 3 cut(s) 46, 770, 1114
MnlI CCTC 8 cut(s) 274, 281, 429, 709, 807, 841, 874, 1009
MroXI GAANNNNTTC 1 cut(s) 508
MseI TTAA 3 cut(s) 101, 302, 867
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 3 cut(s) 92, 164, 650
MspI CCGG 2 cut(s) 115, 955
MspR9I CCNGG 4 cut(s) 116, 236, 409, 969
MvaI CCWGG 3 cut(s) 236, 409, 969
MwoI GCNNNNNNNGC 4 cut(s) 164, 413, 727, 814
NciI CCSGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 579
NdeII GATC 5 cut(s) 316, 689, 742, 1107, 1114
NlaIII CATG 8 cut(s) 538, 583, 596, 701, 740, 982, 1028, 1049
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 283
NspI RCATGY 1 cut(s) 1049
PagI TCATGA 1 cut(s) 697
PaqCI CACCTGC 1 cut(s) 413
PciSI GCTCTTC 1 cut(s) 1035
PdmI GAANNNNTTC 1 cut(s) 508
PfeI GAWTC 6 cut(s) 191, 587, 620, 626, 975, 1007
PfoI TCCNGGA 1 cut(s) 114
PinAI ACCGGT 1 cut(s) 954
PkrI GCNGC 6 cut(s) 94, 166, 256, 723, 859, 862
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
Ppu21I YACGTR 2 cut(s) 335, 1067
Psp6I CCWGG 3 cut(s) 234, 407, 967
PspCI CACGTG 1 cut(s) 335
PspFI CCCAGC 1 cut(s) 160
PspGI CCWGG 3 cut(s) 234, 407, 967
PspN4I GGNNCC 1 cut(s) 240
PspPI GGNCC 1 cut(s) 1031
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 3 cut(s) 194, 260, 365
PsuI RGATCY 1 cut(s) 742
PvuII CAGCTG 2 cut(s) 92, 164
RsaI GTAC 4 cut(s) 88, 142, 454, 1079
RsaNI GTAC 4 cut(s) 87, 141, 453, 1078
RseI CAYNNNNRTG 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 1035
SaqAI TTAA 3 cut(s) 101, 302, 867
SatI GCNGC 6 cut(s) 93, 165, 255, 722, 858, 861
Sau3AI GATC 5 cut(s) 316, 689, 742, 1107, 1114
Sau96I GGNCC 1 cut(s) 1031
ScaI AGTACT 2 cut(s) 142, 454
ScrFI CCNGG 4 cut(s) 116, 236, 409, 969
SduI GDGCHC 3 cut(s) 430, 478, 544
SexAI ACCWGGT 1 cut(s) 234
SfcI CTRYAG 2 cut(s) 390, 861
SinI GGWCC 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 6 cut(s) 48, 54, 128, 667, 782, 1148
SsiI CCGC 4 cut(s) 274, 313, 648, 933
SspMI CTAG 3 cut(s) 396, 491, 1098
StyD4I CCNGG 4 cut(s) 114, 234, 407, 967
StyI CCWWGG 1 cut(s) 579
TaaI ACNGT 2 cut(s) 1077, 1082
TaiI ACGT 3 cut(s) 337, 547, 1069
TaqI TCGA 1 cut(s) 762
TaqII GACCGA 1 cut(s) 1048
TasI AATT 6 cut(s) 48, 54, 128, 667, 782, 1148
TatI WGTACW 3 cut(s) 140, 452, 1077
TfiI GAWTC 6 cut(s) 191, 587, 620, 626, 975, 1007
Tru1I TTAA 3 cut(s) 101, 302, 867
Tru9I TTAA 3 cut(s) 101, 302, 867
TscAI CASTG 2 cut(s) 81, 738
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 6 cut(s) 92, 164, 254, 721, 857, 860
Tsp45I GTSAC 1 cut(s) 283
TspRI CASTG 2 cut(s) 81, 738
VneI GTGCAC 3 cut(s) 426, 474, 540
VpaK11BI GGWCC 1 cut(s) 1031
XbaI TCTAGA 1 cut(s) 1097
XceI RCATGY 1 cut(s) 1049
XmnI GAANNNNTTC 1 cut(s) 508
XspI CTAG 3 cut(s) 396, 491, 1098
ZrmI AGTACT 2 cut(s) 142, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.