Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

33918335 .. 33918775

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG277000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCAGTGGGGATAATGGCCACCGCGGCTGGAGCTACTGTGATTTTGTACTACATGTTTGGCCGAAAAGCGTCGTCGAAAGACGGCGTTGAGGATGACGACGACAACCGGAGCAGAGATTTCTCCAAGTCCAGATCTGCGATGAGGAGGCTTTCTCGACGACCGACTCAGGCACTGGCCACGTGGATCGAGTCAATGTCCACCTTGTCCGATACGCTGCATTTCAGTTACTCTGAAACTCTAGGCAAATGGCCTATCAGCGACTCTAGTCTTTCCACCACGACCTCCTCGTCCCCTGTAGCGACTCGGATCGCTTCGGCCGCCTCCCCTGCAAAGACATATCAGAATTGGGATCGGGTTGGACCGATTTGTGAAGGTAAAAATCTGAGGAGTTGTGAAGATTTGGACTTTGTTGGATTTGATCAATTTGGTTTAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

146

Amino Acids

16.0

Weight (kDa)

5.82

Isoelectric Point (pI)

59.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	50 - 88	3.3e-07	Lipase 3 N-terminal region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	289
AccII	CGCG	1 cut(s)	26
AciI	CCGC	3 cut(s)	24, 26, 321
AclWI	GGATC	3 cut(s)	194, 317, 360
AcoI	YGGCCR	4 cut(s)	18, 61, 177, 318
AcvI	CACGTG	1 cut(s)	183
AfaI	GTAC	1 cut(s)	50
AflIII	ACRYGT	1 cut(s)	54
AluBI	AGCT	1 cut(s)	35
AluI	AGCT	1 cut(s)	35
AlwI	GGATC	3 cut(s)	194, 317, 360
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	5 cut(s)	18, 61, 177, 251, 318
ApeKI	GCWGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	362
AvaII	GGWCC	1 cut(s)	362
BalI	TGGCCA	2 cut(s)	20, 179
BbrPI	CACGTG	1 cut(s)	183
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	421
BfaI	CTAG	2 cut(s)	242, 267
BfmI	CTRYAG	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	26
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	3 cut(s)	27, 218, 321
BlsI	GCNGC	3 cut(s)	28, 219, 322
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BoxI	GACNNNNGTC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	139, 171
BpmI	CTGGAG	1 cut(s)	51
BsaAI	YACGTR	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	24
BsaWI	WCCGGW	1 cut(s)	108
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bse1I	ACTGG	1 cut(s)	180
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	100
BseMII	CTCAG	2 cut(s)	182, 377
BseNI	ACTGG	1 cut(s)	180
BseRI	GAGGAG	3 cut(s)	160, 277, 403
BseX3I	CGGCCG	1 cut(s)	318
BseXI	GCAGC	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	26
Bsh1285I	CGRYCG	2 cut(s)	164, 321
BshFI	GGCC	5 cut(s)	20, 63, 179, 253, 320
BsiEI	CGRYCG	2 cut(s)	164, 321
BsiSI	CCGG	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	277
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	5 cut(s)	20, 63, 179, 253, 320
Bsp143I	GATC	5 cut(s)	134, 186, 309, 352, 421
BspACI	CCGC	3 cut(s)	24, 26, 321
BspANI	GGCC	5 cut(s)	20, 63, 179, 253, 320
BspCNI	CTCAG	2 cut(s)	181, 378
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	3 cut(s)	194, 317, 360
BsrI	ACTGG	1 cut(s)	180
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	5 cut(s)	134, 186, 309, 352, 421
Bst4CI	ACNGT	1 cut(s)	40
BstBAI	YACGTR	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	168, 386
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	5 cut(s)	137, 189, 312, 355, 424
BstMBI	GATC	5 cut(s)	134, 186, 309, 352, 421
BstMCI	CGRYCG	2 cut(s)	164, 321
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 32, 320, 329
BstNSI	RCATGY	1 cut(s)	58
BstPAI	GACNNNNGTC	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	297
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BstZI	CGGCCG	1 cut(s)	318
BsuRI	GGCC	5 cut(s)	20, 63, 179, 253, 320
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	155
BtsCI	GGATG	1 cut(s)	100
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	2 cut(s)	12, 173
CaiI	CAGNNNCTG	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	362
Cfr42I	CCGCGG	1 cut(s)	27
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	1 cut(s)	49
CviAII	CATG	1 cut(s)	55
CviJI	RGCY	8 cut(s)	20, 29, 35, 63, 151, 179, 253, 320
CviKI_1	RGCY	8 cut(s)	20, 29, 35, 63, 151, 179, 253, 320
CviQI	GTAC	1 cut(s)	49
DdeI	CTNAG	2 cut(s)	168, 386
DpnI	GATC	5 cut(s)	136, 188, 311, 354, 423
DpnII	GATC	5 cut(s)	134, 186, 309, 352, 421
DrdI	GACNNNNNNGTC	1 cut(s)	289
DseDI	GACNNNNNNGTC	1 cut(s)	289
EaeI	YGGCCR	4 cut(s)	18, 61, 177, 318
EagI	CGGCCG	1 cut(s)	318
EclXI	CGGCCG	1 cut(s)	318
Eco47I	GGWCC	1 cut(s)	362
Eco52I	CGGCCG	1 cut(s)	318
Eco72I	CACGTG	1 cut(s)	183
FaeI	CATG	1 cut(s)	58
FaiI	YATR	2 cut(s)	56, 340
FaqI	GGGAC	1 cut(s)	277
FatI	CATG	1 cut(s)	54
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	3 cut(s)	27, 218, 321
FokI	GGATG	1 cut(s)	107
Fsp4HI	GCNGC	3 cut(s)	27, 218, 321
FspBI	CTAG	2 cut(s)	242, 267
GluI	GCNGC	3 cut(s)	27, 218, 321
GsuI	CTGGAG	1 cut(s)	51
HaeIII	GGCC	5 cut(s)	20, 63, 179, 253, 320
HapII	CCGG	1 cut(s)	109
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	58
HinfI	GANTC	4 cut(s)	166, 191, 263, 304
HpaII	CCGG	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	201
Hpy188I	TCNGA	5 cut(s)	211, 235, 309, 345, 387
Hpy188III	TCNNGA	2 cut(s)	132, 156
Hpy8I	GTNNAC	1 cut(s)	201
Hpy99I	CGWCG	4 cut(s)	76, 79, 104, 162
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	2 cut(s)	220, 332
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 32, 320, 329
HpyF3I	CTNAG	2 cut(s)	168, 386
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	1 cut(s)	58
Ksp22I	TGATCA	1 cut(s)	421
KspI	CCGCGG	1 cut(s)	27
Kzo9I	GATC	5 cut(s)	134, 186, 309, 352, 421
LmnI	GCTCC	2 cut(s)	32, 111
LpnPI	CCDG	7 cut(s)	15, 122, 145, 155, 161, 309, 342
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	2 cut(s)	242, 267
MaeII	ACGT	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	5 cut(s)	136, 188, 311, 354, 423
MboI	GATC	5 cut(s)	134, 186, 309, 352, 421
MboII	GAAGA	1 cut(s)	410
MflI	RGATCY	1 cut(s)	134
MlsI	TGGCCA	2 cut(s)	20, 179
MluCI	AATT	2 cut(s)	346, 425
MluNI	TGGCCA	2 cut(s)	20, 179
MlyI	GAGTC	4 cut(s)	160, 200, 257, 298
MmeI	TCCRAC	2 cut(s)	340, 394
MnlI	CCTC	7 cut(s)	85, 138, 141, 295, 298, 334, 381
Mox20I	TGGCCA	2 cut(s)	20, 179
MscI	TGGCCA	2 cut(s)	20, 179
Msp20I	TGGCCA	2 cut(s)	20, 179
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	1 cut(s)	109
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	4 cut(s)	26, 32, 320, 329
NdeII	GATC	5 cut(s)	134, 186, 309, 352, 421
NlaIII	CATG	1 cut(s)	58
NspI	RCATGY	1 cut(s)	58
PciI	ACATGT	1 cut(s)	54
PcsI	WCGNNNNNNNCGW	1 cut(s)	287
PkrI	GCNGC	3 cut(s)	28, 219, 322
PleI	GAGTC	4 cut(s)	160, 199, 257, 298
PmaCI	CACGTG	1 cut(s)	183
PmlI	CACGTG	1 cut(s)	183
PpsI	GAGTC	4 cut(s)	160, 199, 257, 298
Ppu21I	YACGTR	1 cut(s)	183
PscI	ACATGT	1 cut(s)	54
PshAI	GACNNNNGTC	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	183
PspPI	GGNCC	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	175
PsuI	RGATCY	1 cut(s)	134
RsaI	GTAC	1 cut(s)	50
RsaNI	GTAC	1 cut(s)	49
SacII	CCGCGG	1 cut(s)	27
SatI	GCNGC	3 cut(s)	27, 218, 321
Sau3AI	GATC	5 cut(s)	134, 186, 309, 352, 421
Sau96I	GGNCC	1 cut(s)	362
SchI	GAGTC	4 cut(s)	160, 200, 257, 298
SetI	ASST	5 cut(s)	37, 185, 206, 287, 379
SfcI	CTRYAG	1 cut(s)	297
Sfr303I	CCGCGG	1 cut(s)	27
SgrBI	CCGCGG	1 cut(s)	27
SinI	GGWCC	1 cut(s)	362
Sse9I	AATT	2 cut(s)	346, 425
SsiI	CCGC	3 cut(s)	24, 26, 321
SspMI	CTAG	2 cut(s)	242, 267
TaaI	ACNGT	1 cut(s)	40
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	3 cut(s)	77, 157, 189
TaqII	GACCGA	2 cut(s)	178, 379
TasI	AATT	2 cut(s)	346, 425
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	29, 323
TscAI	CASTG	2 cut(s)	12, 180
TseI	GCWGC	1 cut(s)	217
TspRI	CASTG	2 cut(s)	12, 180
VpaK11BI	GGWCC	1 cut(s)	362
XceI	RCATGY	1 cut(s)	58
XspI	CTAG	2 cut(s)	242, 267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.