Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

1508054 .. 1508537

Gene Structure 484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCCAGACGAAAATGAATTGAGTCAAGGGGATCACTGGGAAAGAATAAAACTTCTAAAGCCTACATTCAACATTCTACGTGATAAAGATTCAAAATGCTTTCTTTTGTTGATAGGTGGTACATATAGTATCAAAGATACACTAGCTGCCGCAACTAGTGCAATGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGAAGGTTGCTGCAGCCCGTTGGATTGCTAAGCTCACTACTCCTTGCTTGCTTAAGGCTCTTCATGAATATCCTGAGTATACAGTAAAGGTGAATGCCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

6.95

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	314
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	39
AfaI	GTAC	1 cut(s)	121
AfiI	CCNNNNNNNGG	1 cut(s)	181
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	70, 93
AhlI	ACTAGT	1 cut(s)	155
AluBI	AGCT	2 cut(s)	146, 268
AluI	AGCT	2 cut(s)	146, 268
AlwI	GGATC	1 cut(s)	39
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	3 cut(s)	146, 245, 248
AspA2I	CCTAGG	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	337
AvrII	CCTAGG	1 cut(s)	217
BbvI	GCAGC	3 cut(s)	133, 232, 260
BccI	CCATC	1 cut(s)	188
BcuI	ACTAGT	1 cut(s)	155
BfaI	CTAG	3 cut(s)	143, 156, 218
BfmI	CTRYAG	1 cut(s)	246
BfrI	CTTAAG	1 cut(s)	287
BisI	GCNGC	4 cut(s)	147, 150, 246, 249
BlnI	CCTAGG	1 cut(s)	217
BlpI	GCTNAGC	1 cut(s)	264
BlsI	GCNGC	4 cut(s)	148, 151, 247, 250
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	46
BmuI	ACTGGG	1 cut(s)	46
Bpu1102I	GCTNAGC	1 cut(s)	264
BsaAI	YACGTR	1 cut(s)	80
BsaJI	CCNNGG	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse1I	ACTGG	1 cut(s)	41
Bse3DI	GCAATG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	217
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	168
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	41
BseXI	GCAGC	3 cut(s)	133, 232, 260
BshFI	GGCC	1 cut(s)	167
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmI	GAATGC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	167
Bsp143I	GATC	1 cut(s)	31
Bsp1720I	GCTNAGC	1 cut(s)	264
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	301
BspHI	TCATGA	2 cut(s)	298, 338
BspLI	GGNNCC	1 cut(s)	168
BspMAI	CTGCAG	1 cut(s)	250
BspPI	GGATC	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	300
BspTI	CTTAAG	1 cut(s)	287
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	217
BssMI	GATC	1 cut(s)	31
BssNAI	GTATAC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	217
Bst1107I	GTATAC	1 cut(s)	315
Bst4CI	ACNGT	2 cut(s)	233, 319
Bst6I	CTCTTC	1 cut(s)	300
BstAFI	CTTAAG	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	158
BstBAI	YACGTR	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	284
BstDEI	CTNAG	3 cut(s)	211, 264, 309
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	31
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	133, 232, 260
BstZ17I	GTATAC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	167
BtsCI	GGATG	1 cut(s)	196
BtsIMutI	CAGTG	2 cut(s)	34, 229
Cac8I	GCNNGC	1 cut(s)	284
CciI	TCATGA	2 cut(s)	298, 338
Cfr13I	GGNCC	1 cut(s)	166
Csp6I	GTAC	1 cut(s)	120
CviAII	CATG	2 cut(s)	299, 339
CviJI	RGCY	6 cut(s)	61, 146, 167, 251, 268, 293
CviKI_1	RGCY	6 cut(s)	61, 146, 167, 251, 268, 293
CviQI	GTAC	1 cut(s)	120
DdeI	CTNAG	3 cut(s)	211, 264, 309
DpnI	GATC	1 cut(s)	33
DpnII	GATC	1 cut(s)	31
Eam1104I	CTCTTC	1 cut(s)	300
EarI	CTCTTC	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	217
EcoT14I	CCWWGG	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	217
FaeI	CATG	2 cut(s)	302, 342
FaiI	YATR	6 cut(s)	124, 126, 225, 300, 315, 340
FatI	CATG	2 cut(s)	298, 338
FblI	GTMKAC	1 cut(s)	314
Fnu4HI	GCNGC	4 cut(s)	147, 150, 246, 249
FokI	GGATG	1 cut(s)	203
Fsp4HI	GCNGC	4 cut(s)	147, 150, 246, 249
FspBI	CTAG	3 cut(s)	143, 156, 218
GluI	GCNGC	4 cut(s)	147, 150, 246, 249
HaeIII	GGCC	1 cut(s)	167
Hin1II	CATG	2 cut(s)	302, 342
HinfI	GANTC	2 cut(s)	22, 89
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188III	TCNNGA	3 cut(s)	299, 308, 339
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	232
HpyCH4III	ACNGT	2 cut(s)	233, 319
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	161, 248
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
HpyF3I	CTNAG	3 cut(s)	211, 264, 309
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	2 cut(s)	302, 342
Kzo9I	GATC	1 cut(s)	31
LguI	GCTCTTC	1 cut(s)	300
LpnPI	CCDG	3 cut(s)	18, 22, 321
Lsp1109I	GCAGC	3 cut(s)	133, 232, 260
MaeI	CTAG	3 cut(s)	143, 156, 218
MaeII	ACGT	1 cut(s)	79
MalI	GATC	1 cut(s)	33
MboI	GATC	1 cut(s)	31
MboII	GAAGA	1 cut(s)	287
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	236
MseI	TTAA	1 cut(s)	288
MspCI	CTTAAG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	158
NdeII	GATC	1 cut(s)	31
NlaIII	CATG	2 cut(s)	302, 342
NlaIV	GGNNCC	1 cut(s)	168
PagI	TCATGA	2 cut(s)	298, 338
PciSI	GCTCTTC	1 cut(s)	300
PctI	GAATGC	1 cut(s)	334
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	148, 151, 247, 250
PleI	GAGTC	1 cut(s)	30
PpsI	GAGTC	1 cut(s)	30
Ppu21I	YACGTR	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	166
PstI	CTGCAG	1 cut(s)	250
RsaI	GTAC	1 cut(s)	121
RsaNI	GTAC	1 cut(s)	120
SapI	GCTCTTC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	4 cut(s)	147, 150, 246, 249
Sau3AI	GATC	1 cut(s)	31
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	31
SetI	ASST	6 cut(s)	82, 118, 148, 243, 270, 327
SfcI	CTRYAG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SpeI	ACTAGT	1 cut(s)	155
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	3 cut(s)	143, 156, 218
StyI	CCWWGG	1 cut(s)	217
TaaI	ACNGT	2 cut(s)	233, 319
TaiI	ACGT	1 cut(s)	82
TasI	AATT	1 cut(s)	17
TauI	GCSGC	1 cut(s)	152
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	2 cut(s)	41, 236
TseI	GCWGC	3 cut(s)	146, 245, 248
TspDTI	ATGAA	4 cut(s)	30, 287, 315, 327
TspRI	CASTG	2 cut(s)	41, 236
Vha464I	CTTAAG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	314
XspI	CTAG	3 cut(s)	143, 156, 218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.