Rh2BG210100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001173
Physical Location & Seq
Reverse (-)
19709440 .. 19709682
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG210100.1

Sequence Viewer

Length: 243 bp
ATGCACCAACGGCGGAAGCAGCTTCCGGTCAATGTCGCTCACCTCTATCCGACATCTCCTGGTCCTGGCTCCACCATGCCTTCGCCTCTCCAGTCAAAGTTGAATCCCAATCCCAAGAATTCGTATAGCCAAGCCGGTGATGAGGATTGGGGAAATAGTGTAGAAGAGGAAGTAGTTGAGGAGGAGAAAGACGAGCAGGCCCTTGCCACCGAGCTCTGGCGGTGTCGACATGGCTGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

9.13

Weight (kDa)

5.52

Isoelectric Point (pI)

88.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AciI CCGC 2 cut(s) 13, 220
AcsI RAATTY 1 cut(s) 118
AfiI CCNNNNNNNGG 2 cut(s) 65, 216
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 2 cut(s) 58, 64
AluBI AGCT 2 cut(s) 22, 214
AluI AGCT 2 cut(s) 22, 214
Alw21I GWGCWC 1 cut(s) 216
AoxI GGCC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 19
ApoI RAATTY 1 cut(s) 118
AspS9I GGNCC 2 cut(s) 62, 199
AsuHPI GGTGA 2 cut(s) 32, 149
AvaII GGWCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 31
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 2 cut(s) 60, 66
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
Bme1390I CCNGG 2 cut(s) 60, 66
Bme18I GGWCC 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 62, 199
BmiI GGNNCC 1 cut(s) 70
BmrFI CCNGG 2 cut(s) 60, 66
BpmI CTGGAG 1 cut(s) 74
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 216
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 91
BseBI CCWGG 2 cut(s) 60, 66
BseLI CCNNNNNNNGG 2 cut(s) 65, 216
BseNI ACTGG 1 cut(s) 91
BseRI GAGGAG 2 cut(s) 194, 197
BseXI GCAGC 1 cut(s) 31
BshFI GGCC 1 cut(s) 200
BsiHKAI GWGCWC 1 cut(s) 216
BsiSI CCGG 2 cut(s) 26, 135
BslI CCNNNNNNNGG 2 cut(s) 65, 216
BsnI GGCC 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 216
BspACI CCGC 2 cut(s) 13, 220
BspANI GGCC 1 cut(s) 200
BspLI GGNNCC 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 91
BssAI RCCGGY 1 cut(s) 134
Bst2UI CCWGG 2 cut(s) 60, 66
Bst6I CTCTTC 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 198
BstMWI GCNNNNNNNGC 2 cut(s) 10, 19
BstNI CCWGG 2 cut(s) 60, 66
BstSCI CCNGG 2 cut(s) 58, 64
BstV1I GCAGC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 200
Cac8I GCNNGC 1 cut(s) 198
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 2 cut(s) 62, 199
CviAII CATG 2 cut(s) 76, 230
CviJI RGCY 7 cut(s) 22, 69, 129, 134, 200, 214, 234
CviKI_1 RGCY 7 cut(s) 22, 69, 129, 134, 200, 214, 234
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 28
Ecl136II GAGCTC 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 62
Eco53kI GAGCTC 1 cut(s) 214
EcoICRI GAGCTC 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 199
EcoRI GAATTC 1 cut(s) 118
EcoRII CCWGG 2 cut(s) 58, 64
EcoT38I GRGCYC 1 cut(s) 216
FaeI CATG 2 cut(s) 79, 233
FaiI YATR 3 cut(s) 77, 126, 231
FatI CATG 2 cut(s) 75, 229
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 1 cut(s) 20
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 1 cut(s) 200
HapII CCGG 2 cut(s) 26, 135
Hin1II CATG 2 cut(s) 79, 233
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 1 cut(s) 103
HpaII CCGG 2 cut(s) 26, 135
HphI GGTGA 2 cut(s) 32, 149
Hpy166II GTNNAC 1 cut(s) 227
Hpy188I TCNGA 1 cut(s) 51
Hpy8I GTNNAC 1 cut(s) 227
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 19
Hsp92II CATG 2 cut(s) 79, 233
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 1 cut(s) 31
MboII GAAGA 1 cut(s) 176
MhlI GDGCHC 1 cut(s) 216
MluCI AATT 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 7 cut(s) 53, 96, 136, 160, 172, 175, 231
MspI CCGG 2 cut(s) 26, 135
MspR9I CCNGG 2 cut(s) 60, 66
MvaI CCWGG 2 cut(s) 60, 66
MwoI GCNNNNNNNGC 2 cut(s) 10, 19
NlaIII CATG 2 cut(s) 79, 233
NlaIV GGNNCC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 103
PkrI GCNGC 1 cut(s) 21
Psp124BI GAGCTC 1 cut(s) 216
Psp6I CCWGG 2 cut(s) 58, 64
PspGI CCWGG 2 cut(s) 58, 64
PspN4I GGNNCC 1 cut(s) 70
PspPI GGNCC 2 cut(s) 62, 199
SacI GAGCTC 1 cut(s) 216
SalI GTCGAC 1 cut(s) 225
SatI GCNGC 1 cut(s) 20
Sau96I GGNCC 2 cut(s) 62, 199
ScrFI CCNGG 2 cut(s) 60, 66
SduI GDGCHC 1 cut(s) 216
SetI ASST 4 cut(s) 24, 45, 216, 242
SinI GGWCC 1 cut(s) 62
Sse9I AATT 1 cut(s) 118
SsiI CCGC 2 cut(s) 13, 220
SstI GAGCTC 1 cut(s) 216
StyD4I CCNGG 2 cut(s) 58, 64
TaqI TCGA 1 cut(s) 226
TasI AATT 1 cut(s) 118
TfiI GAWTC 1 cut(s) 103
TseI GCWGC 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.