Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

12355 .. 13823

Gene Structure 1469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000389.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atggccgcggccaccgccgccggagctactgtgattatgtactacatgtttggtcggagagcgtcgtcgaagcggagatttctccaagtcgagatcggcgaggaggaggctttcttggcgacctgctcaggcgccagccacgtggatcgagtcaatctcaaaggcgctaagattattgaggaactaaattattacttgaagctgttgacgctttgttatctattttccaagaaaccgtttccggtgtttttagagtccgtcagtttctctatggaagatgtcctttttcagaagcccaaggctgcgcttctggagcctgcgttcaccattctacgtgataaagattcaaaatgctttcttatgttgatatgtggtatacatagtatcaaaaatacactaactgccacaactggtgcaatggcccctttccaccattcggttttggatgatggtgcaataagcaacttagtcctagaatatgctcactgtgggatggttgttgcagcccgttggattgctcagttcagtactccttgcttgcttaaggttcttggtgaatatcctgagtatacagtaaaggtgaatgtcatttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

198

Amino Acids

21.93

Weight (kDa)

8.18

Isoelectric Point (pI)

40.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	131
AccB1I	GGYRCC	1 cut(s)	131
AccI	GTMKAC	2 cut(s)	376, 569
AccII	CGCG	1 cut(s)	8
AciI	CCGC	5 cut(s)	6, 8, 15, 18, 73
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	3, 9
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	1 cut(s)	132
AfaI	GTAC	2 cut(s)	41, 529
AfiI	CCNNNNNNNGG	1 cut(s)	436
AflII	CTTAAG	1 cut(s)	542
AflIII	ACRYGT	1 cut(s)	45
AgsI	TTSAA	2 cut(s)	199, 348
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	2 cut(s)	26, 202
AluI	AGCT	2 cut(s)	26, 202
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	3 cut(s)	3, 9, 420
ApeKI	GCWGC	2 cut(s)	302, 503
AspLEI	GCGC	3 cut(s)	134, 167, 307
AspS9I	GGNCC	1 cut(s)	421
AsuHPI	GGTGA	3 cut(s)	316, 566, 592
BanI	GGYRCC	1 cut(s)	131
BbrPI	CACGTG	1 cut(s)	142
BbvI	GCAGC	2 cut(s)	289, 515
BccI	CCATC	2 cut(s)	443, 487
BfaI	CTAG	1 cut(s)	473
BfoI	RGCGCY	2 cut(s)	135, 168
BfrI	CTTAAG	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	131
BisI	GCNGC	5 cut(s)	6, 9, 18, 303, 504
BlsI	GCNGC	5 cut(s)	7, 10, 19, 304, 505
BmcAI	AGTACT	1 cut(s)	529
BmgT120I	GGNCC	1 cut(s)	421
BmiI	GGNNCC	3 cut(s)	133, 315, 423
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BpmI	CTGGAG	1 cut(s)	332
Bpu10I	CCTNAGC	1 cut(s)	127
BsaAI	YACGTR	2 cut(s)	142, 335
BsaHI	GRCGYC	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	6, 297
BsaWI	WCCGGW	1 cut(s)	241
BsaXI	ACNNNNNCTCC	4 cut(s)	15, 45, 305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	415
Bse3DI	GCAATG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	6, 297
BseGI	GGATG	2 cut(s)	451, 498
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	3 cut(s)	141, 533, 555
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	2 cut(s)	116, 119
BseXI	GCAGC	2 cut(s)	289, 515
Bsh1236I	CGCG	1 cut(s)	8
BshFI	GGCC	3 cut(s)	5, 11, 422
BshNI	GGYRCC	1 cut(s)	131
BsiSI	CCGG	2 cut(s)	21, 242
BslI	CCNNNNNNNGG	1 cut(s)	436
BsnI	GGCC	3 cut(s)	5, 11, 422
Bsp143I	GATC	2 cut(s)	93, 145
BspACI	CCGC	5 cut(s)	6, 8, 15, 18, 73
BspANI	GGCC	3 cut(s)	5, 11, 422
BspCNI	CTCAG	3 cut(s)	140, 532, 556
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	593
BspLI	GGNNCC	3 cut(s)	133, 315, 423
BspMI	ACCTGC	1 cut(s)	131
BspPI	GGATC	1 cut(s)	153
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	415
BssECI	CCNNGG	2 cut(s)	6, 297
BssMI	GATC	2 cut(s)	93, 145
BssNAI	GTATAC	2 cut(s)	377, 570
BssNI	GRCGYC	1 cut(s)	132
BssT1I	CCWWGG	1 cut(s)	297
Bst1107I	GTATAC	2 cut(s)	377, 570
Bst4CI	ACNGT	4 cut(s)	31, 237, 488, 574
BstACI	GRCGYC	1 cut(s)	132
BstAFI	CTTAAG	1 cut(s)	542
BstBAI	YACGTR	2 cut(s)	142, 335
BstC8I	GCNNGC	3 cut(s)	136, 318, 539
BstDEI	CTNAG	5 cut(s)	127, 168, 466, 519, 564
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	451, 498
BstFNI	CGCG	1 cut(s)	8
BstH2I	RGCGCY	2 cut(s)	135, 168
BstHHI	GCGC	3 cut(s)	134, 167, 307
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 17, 23, 116, 208, 313
BstNSI	RCATGY	1 cut(s)	49
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	289, 515
BstXI	CCANNNNNNTGG	1 cut(s)	142
BstZ17I	GTATAC	2 cut(s)	377, 570
BsuRI	GGCC	3 cut(s)	5, 11, 422
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	451, 498
BtsIMutI	CAGTG	1 cut(s)	484
BveI	ACCTGC	1 cut(s)	131
Cac8I	GCNNGC	3 cut(s)	136, 318, 539
CciI	TCATGA	1 cut(s)	593
CfoI	GCGC	3 cut(s)	134, 167, 307
Cfr13I	GGNCC	1 cut(s)	421
Cfr42I	CCGCGG	1 cut(s)	9
CseI	GACGC	2 cut(s)	51, 217
Csp6I	GTAC	2 cut(s)	40, 528
CviAII	CATG	2 cut(s)	46, 594
CviQI	GTAC	2 cut(s)	40, 528
DdeI	CTNAG	5 cut(s)	127, 168, 466, 519, 564
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	3, 9
Eco130I	CCWWGG	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	297
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	2 cut(s)	49, 597
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	2 cut(s)	45, 593
FblI	GTMKAC	2 cut(s)	376, 569
Fnu4HI	GCNGC	5 cut(s)	6, 9, 18, 303, 504
FokI	GGATG	2 cut(s)	458, 505
Fsp4HI	GCNGC	5 cut(s)	6, 9, 18, 303, 504
FspBI	CTAG	1 cut(s)	473
GlaI	GCGC	3 cut(s)	133, 166, 306
GluI	GCNGC	5 cut(s)	6, 9, 18, 303, 504
GsuI	CTGGAG	1 cut(s)	332
HaeII	RGCGCY	2 cut(s)	135, 168
HaeIII	GGCC	3 cut(s)	5, 11, 422
HapII	CCGG	2 cut(s)	21, 242
HgaI	GACGC	2 cut(s)	51, 217
HhaI	GCGC	3 cut(s)	134, 167, 307
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	49, 597
Hin6I	GCGC	3 cut(s)	132, 165, 305
HinP1I	GCGC	3 cut(s)	132, 165, 305
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	3 cut(s)	150, 254, 344
HpaII	CCGG	2 cut(s)	21, 242
HphI	GGTGA	3 cut(s)	316, 566, 592
Hpy166II	GTNNAC	4 cut(s)	207, 324, 377, 570
Hpy188I	TCNGA	2 cut(s)	57, 291
Hpy188III	TCNNGA	4 cut(s)	91, 311, 563, 594
Hpy8I	GTNNAC	4 cut(s)	207, 324, 377, 570
Hpy99I	CGWCG	2 cut(s)	67, 70
HpyCH4III	ACNGT	4 cut(s)	31, 237, 488, 574
HpyCH4IV	ACGT	2 cut(s)	141, 334
HpyCH4V	TGCA	3 cut(s)	416, 455, 503
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 17, 23, 116, 208, 313
HpyF3I	CTNAG	5 cut(s)	127, 168, 466, 519, 564
HpySE526I	ACGT	2 cut(s)	141, 334
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	2 cut(s)	49, 597
HspAI	GCGC	3 cut(s)	132, 165, 305
KasI	GGCGCC	1 cut(s)	131
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	93, 145
LmnI	GCTCC	2 cut(s)	23, 313
LpnPI	CCDG	9 cut(s)	34, 114, 136, 148, 255, 296, 330, 396, 576
Lsp1109I	GCAGC	2 cut(s)	289, 515
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	2 cut(s)	141, 334
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	1 cut(s)	287
MluCI	AATT	1 cut(s)	187
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	159, 263
MmeI	TCCRAC	2 cut(s)	35, 491
MnlI	CCTC	4 cut(s)	94, 97, 100, 172
MseI	TTAA	1 cut(s)	543
MspA1I	CMGCKG	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	2 cut(s)	21, 242
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	6 cut(s)	14, 17, 23, 116, 208, 313
NarI	GGCGCC	1 cut(s)	132
NdeII	GATC	2 cut(s)	93, 145
NlaIII	CATG	2 cut(s)	49, 597
NlaIV	GGNNCC	3 cut(s)	133, 315, 423
NspI	RCATGY	1 cut(s)	49
PagI	TCATGA	1 cut(s)	593
PciI	ACATGT	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	7, 10, 19, 304, 505
PleI	GAGTC	2 cut(s)	158, 262
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
PpsI	GAGTC	2 cut(s)	158, 262
Ppu21I	YACGTR	2 cut(s)	142, 335
PscI	ACATGT	1 cut(s)	45
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	3 cut(s)	133, 315, 423
PspPI	GGNCC	1 cut(s)	421
RsaI	GTAC	2 cut(s)	41, 529
RsaNI	GTAC	2 cut(s)	40, 528
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	543
SatI	GCNGC	5 cut(s)	6, 9, 18, 303, 504
Sau3AI	GATC	2 cut(s)	93, 145
Sau96I	GGNCC	1 cut(s)	421
ScaI	AGTACT	1 cut(s)	529
SchI	GAGTC	2 cut(s)	159, 263
SetI	ASST	7 cut(s)	28, 125, 144, 204, 337, 549, 582
SfoI	GGCGCC	1 cut(s)	133
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	1 cut(s)	187
SsiI	CCGC	5 cut(s)	6, 8, 15, 18, 73
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	4 cut(s)	31, 237, 488, 574
TaiI	ACGT	2 cut(s)	144, 337
TaqI	TCGA	3 cut(s)	68, 90, 148
TasI	AATT	1 cut(s)	187
TatI	WGTACW	2 cut(s)	39, 527
TauI	GCSGC	3 cut(s)	8, 11, 20
TfiI	GAWTC	1 cut(s)	344
Tru1I	TTAA	1 cut(s)	543
Tru9I	TTAA	1 cut(s)	543
TscAI	CASTG	1 cut(s)	491
TseI	GCWGC	2 cut(s)	302, 503
TspDTI	ATGAA	1 cut(s)	582
TspGWI	ACGGA	1 cut(s)	247
TspRI	CASTG	1 cut(s)	491
Vha464I	CTTAAG	1 cut(s)	542
XceI	RCATGY	1 cut(s)	49
XmiI	GTMKAC	2 cut(s)	376, 569
XspI	CTAG	1 cut(s)	473
ZrmI	AGTACT	1 cut(s)	529

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.