Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Forward (+)

61253 .. 62361

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG000800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAAGATGTCCTTTTTCAGAAGCCCAAGGCTGCGCTTCTGAAGCCTGCGTTCACCATTCTACGTGATAAAGATTCAAAATGCTTTCTTATGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCCACAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGGATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTGCTGCAGCCCGTTGGATTGCTCAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGTGAATGCCATTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

108

Amino Acids

11.69

Weight (kDa)

8.49

Isoelectric Point (pI)

20.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_3	PF01764	31 - 104	3.7e-07	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	299
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	106, 259
AfiI	CCNNNNNNNGG	1 cut(s)	166
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	78
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	32, 230, 233
AspA2I	CCTAGG	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	3 cut(s)	46, 296, 322
AvrII	CCTAGG	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	19, 217, 245
BccI	CCATC	2 cut(s)	173, 217
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	231
BfrI	CTTAAG	1 cut(s)	272
BisI	GCNGC	3 cut(s)	33, 231, 234
BlnI	CCTAGG	1 cut(s)	202
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	3 cut(s)	34, 232, 235
BmcAI	AGTACT	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaAI	YACGTR	2 cut(s)	65, 101
BsaJI	CCNNGG	2 cut(s)	27, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse1I	ACTGG	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	27, 202
BseGI	GGATG	2 cut(s)	181, 228
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	3 cut(s)	263, 268, 285
BseNI	ACTGG	1 cut(s)	145
BseXI	GCAGC	3 cut(s)	19, 217, 245
BsgI	GTGCAG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmI	GAATGC	1 cut(s)	319
BsnI	GGCC	1 cut(s)	152
Bsp1720I	GCTNAGC	1 cut(s)	249
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	3 cut(s)	262, 267, 286
BspHI	TCATGA	1 cut(s)	323
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	235
BspTI	CTTAAG	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	2 cut(s)	27, 202
BssNAI	GTATAC	1 cut(s)	300
BssT1I	CCWWGG	2 cut(s)	27, 202
Bst1107I	GTATAC	1 cut(s)	300
Bst4CI	ACNGT	2 cut(s)	218, 304
BstAFI	CTTAAG	1 cut(s)	272
BstBAI	YACGTR	2 cut(s)	65, 101
BstC8I	GCNNGC	2 cut(s)	48, 269
BstDEI	CTNAG	4 cut(s)	196, 249, 254, 294
BstF5I	GGATG	2 cut(s)	181, 228
BstHHI	GCGC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstSFI	CTRYAG	1 cut(s)	231
BstV1I	GCAGC	3 cut(s)	19, 217, 245
BstZ17I	GTATAC	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	152
BtsCI	GGATG	2 cut(s)	181, 228
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 214
Cac8I	GCNNGC	2 cut(s)	48, 269
CciI	TCATGA	1 cut(s)	323
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	2 cut(s)	105, 258
CviAII	CATG	1 cut(s)	324
CviJI	RGCY	7 cut(s)	25, 32, 46, 152, 236, 253, 278
CviKI_1	RGCY	7 cut(s)	25, 32, 46, 152, 236, 253, 278
CviQI	GTAC	2 cut(s)	105, 258
DdeI	CTNAG	4 cut(s)	196, 249, 254, 294
Eco130I	CCWWGG	2 cut(s)	27, 202
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	2 cut(s)	27, 202
ErhI	CCWWGG	2 cut(s)	27, 202
FaeI	CATG	1 cut(s)	327
FaiI	YATR	5 cut(s)	92, 111, 210, 300, 325
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	1 cut(s)	323
FblI	GTMKAC	1 cut(s)	299
Fnu4HI	GCNGC	3 cut(s)	33, 231, 234
FokI	GGATG	2 cut(s)	188, 235
Fsp4HI	GCNGC	3 cut(s)	33, 231, 234
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	3 cut(s)	33, 231, 234
HaeIII	GGCC	1 cut(s)	152
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	327
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HinfI	GANTC	1 cut(s)	74
HphI	GGTGA	3 cut(s)	46, 296, 322
Hpy166II	GTNNAC	3 cut(s)	54, 107, 300
Hpy188I	TCNGA	2 cut(s)	21, 42
Hpy188III	TCNNGA	2 cut(s)	293, 324
Hpy8I	GTNNAC	3 cut(s)	54, 107, 300
HpyCH4III	ACNGT	2 cut(s)	218, 304
HpyCH4IV	ACGT	2 cut(s)	64, 100
HpyCH4V	TGCA	2 cut(s)	146, 233
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	4 cut(s)	196, 249, 254, 294
HpySE526I	ACGT	2 cut(s)	64, 100
Hsp92II	CATG	1 cut(s)	327
HspAI	GCGC	1 cut(s)	35
LpnPI	CCDG	3 cut(s)	60, 126, 306
Lsp1109I	GCAGC	3 cut(s)	19, 217, 245
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	64, 100
MboII	GAAGA	1 cut(s)	17
MmeI	TCCRAC	1 cut(s)	221
MseI	TTAA	1 cut(s)	273
MspCI	CTTAAG	1 cut(s)	272
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	327
NlaIV	GGNNCC	1 cut(s)	153
PagI	TCATGA	1 cut(s)	323
PctI	GAATGC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	74
PkrI	GCNGC	3 cut(s)	34, 232, 235
Ppu21I	YACGTR	2 cut(s)	65, 101
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	106, 259
RsaNI	GTAC	2 cut(s)	105, 258
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	3 cut(s)	33, 231, 234
Sau96I	GGNCC	1 cut(s)	151
ScaI	AGTACT	1 cut(s)	259
SetI	ASST	4 cut(s)	67, 103, 255, 312
SfcI	CTRYAG	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	2 cut(s)	27, 202
TaaI	ACNGT	2 cut(s)	218, 304
TaiI	ACGT	2 cut(s)	67, 103
TatI	WGTACW	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	2 cut(s)	153, 221
TseI	GCWGC	3 cut(s)	32, 230, 233
TspDTI	ATGAA	1 cut(s)	312
TspRI	CASTG	2 cut(s)	153, 221
Vha464I	CTTAAG	1 cut(s)	272
XmaJI	CCTAGG	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	299
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.