Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001173

Physical Location & Seq

Genomic Coordinates Reverse (-)

46300696 .. 46305147

Gene Structure 4452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG249500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGGCGGCGGGGACAATGGCGACCGCCGCCGGAGCTGCTGTGATTCTGTACTACATGTTTGGCCGGAGAGCGTCGTCGAAGGACGGCGTTGAGGACGACGACGACGACAATCGGAGCGGAGATTTCTCCAAGTCGAGATCGGCTAGGAGGAGGCTTTCTCGGCGACCGGCTCAGGCCCCGGCCACGTGGATCGAGTCAATGTCCACCTTGTCCGATACGCTGCGTTTCACTTACTCTGAGACTCTAGGGAAATGGCCGATCGGCGACTTGGCCTTCGGCATTAACTACCTCATGCGTAGGCAGGGGAATTTACAAGTGGCGAGTGTGTATGCTGGTAGTGATAGTGTGCAGCTCAAAGGCGCTAAGATTATTGAGGAACTAAATTATTACTTGAAGCTGTTGACGCTTTGTTATCTGTTTTCCAAGAAGCCCTTTCCGGTGTTTTTAGAGTCCGGCGGTTTCTCTATGGAAGATGTCCTTCTTCAGAAGCCCAAGGCTGCGCTTCTGAAGCCTGCGTTCACCATTCTGCGTGATAAAGATTCAAAATGCTTTCTTCTGTTGATACGTGGTACACATAGTATCAAAGATACACTAACTGCCGCAACTGGTGCAGTGGCCCCTTTCCACCATTCGGTTTTGCATGATGGTGGAATAAGCAACTTAGTCCTAGGATATGCTCACTGTGGGATGGTTGCTGCAGCCCGTTGGATTGCTAAGCTCAGTACTCCTTGCTTGCTTAAGGCTCTTGGTGAATATCCTGAGTATACAGTAAAGGTTGTTGGACATTCACTGGGGGGTGGTACAGCTGCTTTATTAACATACATTCTCCGGGAACAGAGAGAATTATCTTCAAGTACTTGCATTACATTTGCCCCAGCTGCCTGTATAACAATGGAGTTGGCAGAATCTGGCAAGCACTTCATCACTACTATCATCAATGGCTCTGACCTGGTGCCTACATTCTCAGCAGCTTCTGTTGATGACCTCCGCTCTGAGGTCACAGCTTCATCTTGGTTAAATGATTTGCGGGATCAGGTTGAGCATACACGTGTTTTGAATGTTGTTTATCGTTCAGCAACTGCTCTGGGTTCTCGTCTACCATCTATAGCTAGTGCAAAAGCCAGGGTTGCTGGTGCAGGTGCACTATTGAGGCCAGTATCCAGCAGTACTCAGGTTGTGATGAAGCGTGCACAAAATGTTGCCCTAGCTGTTGTTAGAACCCGTTCATCTATATCATCTTGGTCTTGCATGGGTGCACGTCGTCGTAATGTGGGTCAATCATTGAACTCTACCATGGGTGATTCACATGAAACTTCTGTAATATGTGAAAGGGATTCTGAATCTCTGGCCGAAGGAACAACCGCTGACCCAATGCTGGATAATTTGGTGTGTAGTTCTGGTGGATCAGGTCATGATGATACTGATGAAGAGGAGCAGCTTTTGCCAGTGCATGAAGATCCAACCACATCTGCTGTTGAAGACATTACTGAAGGTGAATTGTGGTATGAACTGGAGAAGGAGCTTACGAGGCAGGAGAATGAAATCAATGTTCAGGCTAAGGAGGAAGAAGCTGCTGCAGTTAAAGAAATAACTGAGGAAGAAAATATGCTGGTTGATGTTGCAGAAAGCAATACGCCAATCTCTTCCGCAGACATTTCTGAGAGCCACCGGTTCTATCCCCCTGGCAGAATCATGCACATTATATCAGTAACCTCATCTGATTCTGCCGATTTAGACCATGATGGACCGAGTGAAGAGCATGTTGGTATATACGAGACACGTAGAGAACTGTACAGTAAGCTCCGACTTTCTAGAACGATGATCAACGATCACTATATGCCTATGTATAAGAAAATGATGGAATTGTTGATTAGAGAACTGGAAAATGAAGAAGCAGATAGTTGTGTTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0001676 GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006082 GO:0006629 GO:0006631 GO:0006638 GO:0006639 GO:0006690 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009987 GO:0016020 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019369 GO:0019752 GO:0032787 GO:0033559 GO:0042133 GO:0042136 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044249 GO:0044255 GO:0044281 GO:0044464 GO:0046339 GO:0046340 GO:0046461 GO:0046464 GO:0046486 GO:0046503 GO:0047372 GO:0052689 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901568 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04723 ko04745 ko04925 map04723 map04745 map04925

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

637

Amino Acids

69.77

Weight (kDa)

5.31

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase3_N	PF03893	51 - 131	1.1e-16	Lipase 3 N-terminal region
Lipase_3	PF01764	186 - 323	1.2e-26	Lipase (class 3)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0001173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16070 AT4G16070 AT4G16070
fragaria_vesca	FvH4_4g18880
malus_domestica	MD13G1162400.v1.1 MD16G1162200.v1.1
prunus_persica	Prupe.1G129700_v2.0.a1
pyrus_communis	pycom13g13870 pycom16g13760
rosa_chinensis	RchiOBHm_Chr2g0160841 RchiOBHm_Chr4g0423781 RchiOBHm_Chr4g0423981
rosa_laevigata	RLG00000000522 RLG00000007533 RLG00000013372 RLG00000014048 RLG00000023214
rosa_multiflora	Rmu_co8377889.1_g000001 Rmu_sc0000045.1_g000074 Rmu_sc0000389.1_g000004 Rmu_sc0000464.1_g000001 Rmu_sc0001389.1_g000003 Rmu_sc0003002.1_g000068 Rmu_sc0007269.1_g000005 Rmu_sc0007293.1_g000006 Rmu_sc0016022.1_g000001 Rmu_sc0016156.1_g000001 Rmu_sc0027619.1_g000001 Rmu_ssc0000400.1_g000003
rosa_roxburghii	Rroxscaffold_4G00314330 Rroxscaffold_5G00346900 Rroxscaffold_5G00365890 Rroxscaffold_7G00210200
rosa_rugosa	Rorug01G0273200 Rorug02G0105800 Rorug02G0297900.1 Rorug04G0190400
rosa_samantha	Rh1AG191500 Rh1BG000800 Rh1BG300500 Rh1DG332300 Rh2BG210100 Rh2BG565600 Rh2BG565700 Rh2CG202400 Rh4AG250000 Rh4BG255200 Rh4CG263200 Rh4DG249500 Rh5BG272200 Rh5DG149700 Rh5DG277000 Rh5DG280100 Rh6CG191500
rosa_wichuraiana	Rw1G017810 Rw4G021400 Rw7G017410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1127
Acc36I	ACCTGC	1 cut(s)	1127
AccB1I	GGYRCC	1 cut(s)	952
AccBSI	CCGCTC	2 cut(s)	117, 990
AccI	GTMKAC	2 cut(s)	764, 1096
AclWI	GGATC	4 cut(s)	197, 1038, 1411, 1451
AcoI	YGGCCR	4 cut(s)	61, 180, 254, 1347
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	3 cut(s)	467, 527, 1509
AcvI	CACGTG	2 cut(s)	186, 1049
AfaI	GTAC	7 cut(s)	50, 571, 724, 802, 856, 1168, 1793
AfiI	CCNNNNNNNGG	3 cut(s)	631, 994, 1375
AflII	CTTAAG	1 cut(s)	737
AflIII	ACRYGT	4 cut(s)	54, 1046, 1048, 1778
AgeI	ACCGGT	1 cut(s)	1668
AgsI	TTSAA	6 cut(s)	394, 543, 852, 1057, 1285, 1478
AjiI	CACGTC	1 cut(s)	1259
AjnI	CCWGG	3 cut(s)	948, 1121, 1681
AjuI	GAANNNNNNNTTGG	2 cut(s)	1746, 1778
Alw21I	GWGCWC	3 cut(s)	1144, 1192, 1258
Alw26I	GTCTC	2 cut(s)	233, 1769
Alw44I	GTGCAC	3 cut(s)	1140, 1188, 1254
AlwI	GGATC	4 cut(s)	197, 1038, 1411, 1451
AlwNI	CAGNNNCTG	3 cut(s)	908, 974, 1079
AoxI	GGCC	8 cut(s)	61, 174, 180, 254, 270, 615, 1151, 1347
ApaLI	GTGCAC	3 cut(s)	1140, 1188, 1254
ApoI	RAATTY	1 cut(s)	307
ArsI	GACNNNNNNTTYG	2 cut(s)	257, 289
AsiGI	ACCGGT	1 cut(s)	1668
Asp700I	GAANNNNTTC	1 cut(s)	1222
AspA2I	CCTAGG	1 cut(s)	667
AspLEI	GCGC	2 cut(s)	362, 502
AspS9I	GGNCC	3 cut(s)	175, 616, 1745
AsuC2I	CCSGG	2 cut(s)	179, 830
AsuHPI	GGTGA	4 cut(s)	511, 761, 1310, 1505
AvaII	GGWCC	1 cut(s)	1745
AvrII	CCTAGG	1 cut(s)	667
BaeGI	GKGCMC	3 cut(s)	1144, 1192, 1258
BanI	GGYRCC	1 cut(s)	952
BbrPI	CACGTG	2 cut(s)	186, 1049
BbsI	GAAGAC	1 cut(s)	1485
Bbv12I	GWGCWC	3 cut(s)	1144, 1192, 1258
BccI	CCATC	5 cut(s)	638, 682, 1108, 1736, 1852
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	3 cut(s)	950, 1123, 1683
BciVI	GTATCC	1 cut(s)	1168
BclI	TGATCA	1 cut(s)	1821
BcnI	CCSGG	2 cut(s)	179, 830
BcoDI	GTCTC	2 cut(s)	233, 1769
BfaI	CTAG	6 cut(s)	144, 245, 668, 1110, 1205, 1812
BfmI	CTRYAG	3 cut(s)	696, 1104, 1575
BfoI	RGCGCY	1 cut(s)	363
BfrI	CTTAAG	1 cut(s)	737
BfuAI	ACCTGC	1 cut(s)	1127
BfuI	GTATCC	1 cut(s)	1168
BlnI	CCTAGG	1 cut(s)	667
BlpI	GCTNAGC	1 cut(s)	714
BmcAI	AGTACT	3 cut(s)	724, 856, 1168
Bme1390I	CCNGG	5 cut(s)	179, 830, 950, 1123, 1683
Bme18I	GGWCC	1 cut(s)	1745
BmgBI	CACGTC	1 cut(s)	1259
BmgT120I	GGNCC	3 cut(s)	175, 616, 1745
BmiI	GGNNCC	3 cut(s)	177, 618, 954
BmrFI	CCNGG	5 cut(s)	179, 830, 950, 1123, 1683
BmrI	ACTGGG	1 cut(s)	800
BmuI	ACTGGG	1 cut(s)	800
BpiI	GAAGAC	1 cut(s)	1485
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	1532
Bpu10I	CCTNAGC	2 cut(s)	171, 1557
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuMI	CCSGG	2 cut(s)	179, 830
BsaAI	YACGTR	4 cut(s)	186, 566, 1049, 1781
BsaJI	CCNNGG	6 cut(s)	177, 492, 667, 1122, 1293, 1681
BsaWI	WCCGGW	2 cut(s)	436, 1668
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	3 cut(s)	631, 994, 1375
Bse118I	RCCGGY	2 cut(s)	166, 1668
Bse1I	ACTGG	6 cut(s)	610, 795, 1154, 1445, 1515, 1884
BseBI	CCWGG	3 cut(s)	950, 1123, 1683
BseDI	CCNNGG	6 cut(s)	177, 492, 667, 1122, 1293, 1681
BseGI	GGATG	1 cut(s)	693
BseLI	CCNNNNNNNGG	3 cut(s)	631, 994, 1375
BseMII	CTCAG	9 cut(s)	185, 228, 733, 750, 978, 984, 1184, 1584, 1650
BseNI	ACTGG	6 cut(s)	610, 795, 1154, 1445, 1515, 1884
BseRI	GAGGAG	2 cut(s)	163, 1445
BseSI	GKGCMC	3 cut(s)	1144, 1192, 1258
BseYI	CCCAGC	1 cut(s)	874
BsgI	GTGCAG	3 cut(s)	368, 630, 1155
Bsh1285I	CGRYCG	3 cut(s)	24, 167, 261
BshFI	GGCC	8 cut(s)	63, 176, 182, 256, 272, 617, 1153, 1349
BshNI	GGYRCC	1 cut(s)	952
BshTI	ACCGGT	1 cut(s)	1668
BsiEI	CGRYCG	3 cut(s)	24, 167, 261
BsiHKAI	GWGCWC	3 cut(s)	1144, 1192, 1258
BsiSI	CCGG	8 cut(s)	30, 64, 167, 179, 437, 453, 829, 1669
BslFI	GGGAC	1 cut(s)	25
BslI	CCNNNNNNNGG	3 cut(s)	631, 994, 1375
BsmAI	GTCTC	2 cut(s)	233, 1769
BsmFI	GGGAC	1 cut(s)	25
BsnI	GGCC	8 cut(s)	63, 176, 182, 256, 272, 617, 1153, 1349
Bsp1286I	GDGCHC	3 cut(s)	1144, 1192, 1258
Bsp1407I	TGTACA	1 cut(s)	1791
Bsp143I	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
Bsp1720I	GCTNAGC	1 cut(s)	714
Bsp19I	CCATGG	1 cut(s)	1293
BspANI	GGCC	8 cut(s)	63, 176, 182, 256, 272, 617, 1153, 1349
BspCNI	CTCAG	9 cut(s)	184, 229, 732, 751, 977, 985, 1183, 1585, 1651
BspHI	TCATGA	1 cut(s)	1411
BspLI	GGNNCC	3 cut(s)	177, 618, 954
BspMAI	CTGCAG	2 cut(s)	700, 1579
BspMI	ACCTGC	1 cut(s)	1127
BspPI	GGATC	4 cut(s)	197, 1038, 1411, 1451
BspQI	GCTCTTC	1 cut(s)	1749
BspT107I	GGYRCC	1 cut(s)	952
BspTI	CTTAAG	1 cut(s)	737
BsrBI	CCGCTC	2 cut(s)	117, 990
BsrFI	RCCGGY	2 cut(s)	166, 1668
BsrGI	TGTACA	1 cut(s)	1791
BsrI	ACTGG	6 cut(s)	610, 795, 1154, 1445, 1515, 1884
BssAI	RCCGGY	2 cut(s)	166, 1668
BssECI	CCNNGG	6 cut(s)	177, 492, 667, 1122, 1293, 1681
BssMI	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
BssNAI	GTATAC	1 cut(s)	765
BssT1I	CCWWGG	3 cut(s)	492, 667, 1293
Bst1107I	GTATAC	1 cut(s)	765
Bst2UI	CCWGG	3 cut(s)	950, 1123, 1683
Bst4CI	ACNGT	4 cut(s)	683, 769, 1791, 1796
Bst6I	CTCTTC	3 cut(s)	1422, 1648, 1749
BstAFI	CTTAAG	1 cut(s)	737
BstAPI	GCANNNNNTGC	2 cut(s)	608, 1441
BstAUI	TGTACA	1 cut(s)	1791
BstBAI	YACGTR	4 cut(s)	186, 566, 1049, 1781
BstC8I	GCNNGC	4 cut(s)	513, 734, 914, 1188
BstDSI	CCRYGG	1 cut(s)	1293
BstF5I	GGATG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	2 cut(s)	362, 502
BstKTI	GATC	8 cut(s)	140, 192, 261, 1033, 1406, 1459, 1824, 1831
BstMAI	GTCTC	2 cut(s)	233, 1769
BstMBI	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
BstMCI	CGRYCG	3 cut(s)	24, 167, 261
BstNI	CCWGG	3 cut(s)	950, 1123, 1683
BstNSI	RCATGY	2 cut(s)	58, 1763
BstSCI	CCNGG	5 cut(s)	177, 828, 948, 1121, 1681
BstSFI	CTRYAG	3 cut(s)	696, 1104, 1575
BstSLI	GKGCMC	3 cut(s)	1144, 1192, 1258
BstV2I	GAAGAC	1 cut(s)	1485
BstX2I	RGATCY	1 cut(s)	1456
BstYI	RGATCY	1 cut(s)	1456
BstZ17I	GTATAC	1 cut(s)	765
BsuI	GTATCC	1 cut(s)	1168
BsuRI	GGCC	8 cut(s)	63, 176, 182, 256, 272, 617, 1153, 1349
BtgI	CCRYGG	1 cut(s)	1293
BtrI	CACGTC	1 cut(s)	1259
BtsCI	GGATG	1 cut(s)	693
BtsI	GCAGTG	1 cut(s)	618
BtsIMutI	CAGTG	4 cut(s)	618, 679, 788, 1452
BveI	ACCTGC	1 cut(s)	1127
Cac8I	GCNNGC	4 cut(s)	513, 734, 914, 1188
CaiI	CAGNNNCTG	3 cut(s)	908, 974, 1079
CciI	TCATGA	1 cut(s)	1411
CfoI	GCGC	2 cut(s)	362, 502
Cfr10I	RCCGGY	2 cut(s)	166, 1668
Cfr13I	GGNCC	3 cut(s)	175, 616, 1745
CseI	GACGC	2 cut(s)	60, 412
CsiI	ACCWGGT	1 cut(s)	948
Csp6I	GTAC	7 cut(s)	49, 570, 723, 801, 855, 1167, 1792
CspAI	ACCGGT	1 cut(s)	1668
CviQI	GTAC	7 cut(s)	49, 570, 723, 801, 855, 1167, 1792
DpnI	GATC	8 cut(s)	139, 191, 260, 1032, 1405, 1458, 1823, 1830
DpnII	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
EaeI	YGGCCR	4 cut(s)	61, 180, 254, 1347
Eam1104I	CTCTTC	3 cut(s)	1422, 1648, 1749
EarI	CTCTTC	3 cut(s)	1422, 1648, 1749
Eco130I	CCWWGG	3 cut(s)	492, 667, 1293
Eco47I	GGWCC	1 cut(s)	1745
Eco57I	CTGAAG	3 cut(s)	467, 527, 1509
Eco72I	CACGTG	2 cut(s)	186, 1049
EcoO109I	RGGNCCY	1 cut(s)	175
EcoRII	CCWGG	3 cut(s)	948, 1121, 1681
EcoT14I	CCWWGG	3 cut(s)	492, 667, 1293
ErhI	CCWWGG	3 cut(s)	492, 667, 1293
FalI	AAGNNNNNCTT	4 cut(s)	416, 448, 462, 494
FaqI	GGGAC	1 cut(s)	25
FauI	CCCGC	1 cut(s)	1020
FbaI	TGATCA	1 cut(s)	1821
FblI	GTMKAC	2 cut(s)	764, 1096
FokI	GGATG	1 cut(s)	700
FspBI	CTAG	6 cut(s)	144, 245, 668, 1110, 1205, 1812
GlaI	GCGC	2 cut(s)	361, 501
GsaI	CCCAGC	1 cut(s)	878
GsuI	CTGGAG	1 cut(s)	1532
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	8 cut(s)	63, 176, 182, 256, 272, 617, 1153, 1349
HapII	CCGG	8 cut(s)	30, 64, 167, 179, 437, 453, 829, 1669
HgaI	GACGC	2 cut(s)	60, 412
HhaI	GCGC	2 cut(s)	362, 502
Hin6I	GCGC	2 cut(s)	360, 500
HinP1I	GCGC	2 cut(s)	360, 500
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HpaII	CCGG	8 cut(s)	30, 64, 167, 179, 437, 453, 829, 1669
HphI	GGTGA	4 cut(s)	511, 761, 1310, 1505
Hpy166II	GTNNAC	9 cut(s)	204, 402, 519, 572, 765, 1097, 1142, 1190, 1256
Hpy188III	TCNNGA	4 cut(s)	135, 758, 1412, 1812
Hpy8I	GTNNAC	9 cut(s)	204, 402, 519, 572, 765, 1097, 1142, 1190, 1256
Hpy99I	CGWCG	7 cut(s)	76, 79, 101, 104, 107, 1263, 1266
HpyAV	CCTTC	6 cut(s)	73, 283, 488, 1346, 1484, 1510
HpyCH4III	ACNGT	4 cut(s)	683, 769, 1791, 1796
HpyCH4IV	ACGT	5 cut(s)	185, 565, 1048, 1258, 1780
HpySE526I	ACGT	5 cut(s)	185, 565, 1048, 1258, 1780
HspAI	GCGC	2 cut(s)	360, 500
Ksp22I	TGATCA	1 cut(s)	1821
Kzo9I	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
LguI	GCTCTTC	1 cut(s)	1749
LmnI	GCTCC	5 cut(s)	32, 114, 1432, 1519, 1806
MabI	ACCWGGT	1 cut(s)	948
MaeI	CTAG	6 cut(s)	144, 245, 668, 1110, 1205, 1812
MaeII	ACGT	5 cut(s)	185, 565, 1048, 1258, 1780
MaeIII	GTNAC	2 cut(s)	997, 1708
MalI	GATC	8 cut(s)	139, 191, 260, 1032, 1405, 1458, 1823, 1830
MbiI	CCGCTC	2 cut(s)	117, 990
MboI	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
MflI	RGATCY	1 cut(s)	1456
MhlI	GDGCHC	3 cut(s)	1144, 1192, 1258
MluCI	AATT	6 cut(s)	307, 382, 842, 1381, 1496, 1862
MlyI	GAGTC	3 cut(s)	203, 235, 458
MmeI	TCCRAC	4 cut(s)	686, 760, 1484, 1828
MroXI	GAANNNNTTC	1 cut(s)	1222
MseI	TTAA	5 cut(s)	282, 738, 815, 1016, 1581
MslI	CAYNNNNRTG	2 cut(s)	645, 1047
MspA1I	CMGCKG	3 cut(s)	806, 878, 1364
MspCI	CTTAAG	1 cut(s)	737
MspI	CCGG	8 cut(s)	30, 64, 167, 179, 437, 453, 829, 1669
MspR9I	CCNGG	5 cut(s)	179, 830, 950, 1123, 1683
MvaI	CCWGG	3 cut(s)	950, 1123, 1683
NciI	CCSGG	2 cut(s)	179, 830
NcoI	CCATGG	1 cut(s)	1293
NdeII	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
NlaIV	GGNNCC	3 cut(s)	177, 618, 954
NmeAIII	GCCGAG	1 cut(s)	139
NmuCI	GTSAC	1 cut(s)	997
NspI	RCATGY	2 cut(s)	58, 1763
PagI	TCATGA	1 cut(s)	1411
PaqCI	CACCTGC	1 cut(s)	1127
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	1749
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	1222
PfeI	GAWTC	8 cut(s)	43, 539, 905, 1301, 1334, 1340, 1689, 1721
PfoI	TCCNGGA	1 cut(s)	828
PinAI	ACCGGT	1 cut(s)	1668
Ple19I	CGATCG	1 cut(s)	261
PleI	GAGTC	3 cut(s)	202, 235, 457
PmaCI	CACGTG	2 cut(s)	186, 1049
PmlI	CACGTG	2 cut(s)	186, 1049
PpsI	GAGTC	3 cut(s)	202, 235, 457
Ppu21I	YACGTR	4 cut(s)	186, 566, 1049, 1781
PscI	ACATGT	1 cut(s)	54
Psp6I	CCWGG	3 cut(s)	948, 1121, 1681
PspCI	CACGTG	2 cut(s)	186, 1049
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	3 cut(s)	948, 1121, 1681
PspN4I	GGNNCC	3 cut(s)	177, 618, 954
PspPI	GGNCC	3 cut(s)	175, 616, 1745
PstI	CTGCAG	2 cut(s)	700, 1579
PstNI	CAGNNNCTG	3 cut(s)	908, 974, 1079
PsuI	RGATCY	1 cut(s)	1456
PvuI	CGATCG	1 cut(s)	261
PvuII	CAGCTG	2 cut(s)	806, 878
RsaI	GTAC	7 cut(s)	50, 571, 724, 802, 856, 1168, 1793
RsaNI	GTAC	7 cut(s)	49, 570, 723, 801, 855, 1167, 1792
RseI	CAYNNNNRTG	2 cut(s)	645, 1047
SapI	GCTCTTC	1 cut(s)	1749
SaqAI	TTAA	5 cut(s)	282, 738, 815, 1016, 1581
Sau3AI	GATC	8 cut(s)	137, 189, 258, 1030, 1403, 1456, 1821, 1828
Sau96I	GGNCC	3 cut(s)	175, 616, 1745
ScaI	AGTACT	3 cut(s)	724, 856, 1168
SchI	GAGTC	3 cut(s)	203, 235, 458
ScrFI	CCNGG	5 cut(s)	179, 830, 950, 1123, 1683
SduI	GDGCHC	3 cut(s)	1144, 1192, 1258
SexAI	ACCWGGT	1 cut(s)	948
SfcI	CTRYAG	3 cut(s)	696, 1104, 1575
SinI	GGWCC	1 cut(s)	1745
SmiMI	CAYNNNNRTG	2 cut(s)	645, 1047
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	6 cut(s)	307, 382, 842, 1381, 1496, 1862
SspMI	CTAG	6 cut(s)	144, 245, 668, 1110, 1205, 1812
StyD4I	CCNGG	5 cut(s)	177, 828, 948, 1121, 1681
StyI	CCWWGG	3 cut(s)	492, 667, 1293
TaaI	ACNGT	4 cut(s)	683, 769, 1791, 1796
TaiI	ACGT	5 cut(s)	188, 568, 1051, 1261, 1783
TaqI	TCGA	3 cut(s)	77, 134, 192
TaqII	GACCGA	1 cut(s)	1762
TasI	AATT	6 cut(s)	307, 382, 842, 1381, 1496, 1862
TatI	WGTACW	5 cut(s)	48, 722, 854, 1166, 1791
TauI	GCSGC	3 cut(s)	8, 29, 602
TfiI	GAWTC	8 cut(s)	43, 539, 905, 1301, 1334, 1340, 1689, 1721
Tru1I	TTAA	5 cut(s)	282, 738, 815, 1016, 1581
Tru9I	TTAA	5 cut(s)	282, 738, 815, 1016, 1581
TscAI	CASTG	4 cut(s)	618, 686, 795, 1452
TseFI	GTSAC	1 cut(s)	997
Tsp45I	GTSAC	1 cut(s)	997
TspRI	CASTG	4 cut(s)	618, 686, 795, 1452
Vha464I	CTTAAG	1 cut(s)	737
VneI	GTGCAC	3 cut(s)	1140, 1188, 1254
VpaK11BI	GGWCC	1 cut(s)	1745
XapI	RAATTY	1 cut(s)	307
XbaI	TCTAGA	1 cut(s)	1811
XceI	RCATGY	2 cut(s)	58, 1763
XmaJI	CCTAGG	1 cut(s)	667
XmiI	GTMKAC	2 cut(s)	764, 1096
XmnI	GAANNNNTTC	1 cut(s)	1222
XspI	CTAG	6 cut(s)	144, 245, 668, 1110, 1205, 1812
ZrmI	AGTACT	3 cut(s)	724, 856, 1168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.